| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,659,070 | C→T | intergenic (‑32945/‑40474) | unknown ← / → unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,659,070 | 0 | C | T | 100.0% | 21.2 / NA | 8 | intergenic (‑32945/‑40474) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (3/5); total (3/5) | |||||||||||
TCTATAATTTACATTTCTATTTCCTATTAAAAATATATTCAAAAAAAAGAATATTGAGGATATAATGAAGAAAGTTTAGTTGTGTTCTTTTTCAAAAAAGTACTGCATTGTAATATACTTAACATCTTATTTTTATATAACTATAAATCCTAACTCTATGAAAATTTTACTGAAACCTTTCCGCTATTCTGTTATAGCAACAACCATCGCATTGGTATTTAATCAACCGGCATTTGCGTCAGAGTTTAATGCTCAAATAAATAATCAACCGTCTTCTCAGGCTAAAACAAAAAGTAAAACCAATATTAAAAAAAATATGCAGAACAACATATCTAATTCTGCAAAAGAATCCGTT > 1/1658953‑1659307 | cggctaATTTACATTTCTATTTCCTATTAAAAATATATTCAAAAAAAAGAATATTGAGGATATAATGAAGAAAGTTTAGTTGTGTTCTTTTTCAAAAAAGTACTGCATTGTAATATATTTAACATCTTATTTTTATATAACTATAAATCCTAACTCTATGAAAATTTTACTGAAACCTTTCCGCTATTCTGTTATAGCAACAACCATCGCATTGGTATTTAATCAACCGGCATTTGCGTCAGAGTTTAATg < 1:820784/247‑1 (MQ=255) cTATAATTTACATTTCTATTTCCTATTAAAAATATATTCAAAAAAAAGAATATTGAGGATATAATGAAGAAAGTTTAGTTGTGTTCTTTTTCAAAAAAGTACTGCATTGTAATATATTTAACATCTTATTTTTATATAACTATAAATCCTAACTCTATGAAAATTTTACTGAAACCTTTCCGCTATTCTGTTATAGCAACAACCATCGCATTGGTATTTAATCAACCGGCATTTGCGTCAGAGTTTAATGc < 1:85890/251‑1 (MQ=255) atatTGAGGATATAATGAAGAAAGTTTAGTTGTGTTCTTTTTCAAAAAAGTACTGCATTGTAATATATTTAACATCTTATTTTTATATAACTATAAATCCTAACTCTATGAAAATTTTACTGAAACCTTTCCGCTATTCTGTTATAGCAACAACCATCGCATTGGTATTTAATCAACCGGCATTTGCGTCAGAGTTTAATGCTCAAATAAATAATCAACCGTCTTCTCAGGCTAAAACAAAAAGTAAAAcc < 1:837951/251‑1 (MQ=255) gATATAATGAAGAAAGTTTAGTTGTGTTCTTTTTCAAAAAAGTACTGCATTGTAATATATTTAAc > 1:13927/1‑65 (MQ=255) gaagaaAGTTTAGTTGTGTTCTTTTTCAAAAAAGTACTGCATTGTAATATATTTAACATCTTATTTTTATATAACTATAAAt > 1:624866/1‑82 (MQ=255) aaaGTTTAGTTGTGTTCTTTTTCAAAAAAGTACTGCATTGTAATATATTTAACATCTTATTTTTATATAACTATAAATCCTAACTCTATGAAAATTTTACTGAAACCTTTCCGCTATTCTGTTATAGCAACAAcc > 1:741255/1‑135 (MQ=255) cATTGTAATATATTTAACATCTTATTTTTATATAACTATAAATCCTAACTCTATGAAAATTTTACTGAAACCTTTCCGCTATTCTGTTATAGCAACAACCATCGCATTGGTATTTAATCAACCGGCATTTGCGTCAGAGTTTAATGCTCAAATAAATAATCAACCGTCTTCTCAGGCTAAAACAAAAAGTAAAACCAATATTAAAAAAAATATGCAGAACAACATATCTAATTCTGCAAAAGAATCCGtt < 1:402166/250‑1 (MQ=255) ttGTAATATATTTAACATCTTATTTTTATATAACTATAAATCCTAACTCTATGAAAATTTTACTGAAACCTTTCCGCTATTCTGTTATAGCAACAACCATCGCATTGGTATTTAATCAACCGGCATTTGCGTCAGAGTTTAATGCTCAAATAAATAATCAACCGTCTTCTCAGGCTAAAACAAAAAGTAAAACCAATATTAAAAAAAATATGCAGAACAACat < 1:637463/223‑1 (MQ=255) | TCTATAATTTACATTTCTATTTCCTATTAAAAATATATTCAAAAAAAAGAATATTGAGGATATAATGAAGAAAGTTTAGTTGTGTTCTTTTTCAAAAAAGTACTGCATTGTAATATACTTAACATCTTATTTTTATATAACTATAAATCCTAACTCTATGAAAATTTTACTGAAACCTTTCCGCTATTCTGTTATAGCAACAACCATCGCATTGGTATTTAATCAACCGGCATTTGCGTCAGAGTTTAATGCTCAAATAAATAATCAACCGTCTTCTCAGGCTAAAACAAAAAGTAAAACCAATATTAAAAAAAATATGCAGAACAACATATCTAATTCTGCAAAAGAATCCGTT > 1/1658953‑1659307 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |