Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 780,492 G→A intergenic (+45619/+41341) unknown → / ← unknown tRNA‑Asn‑GTT/tRNA‑Thr‑GGT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1780,4920GA100.0% 237.4 / NA 70intergenic (+45619/+41341)unknown/unknowntRNA‑Asn‑GTT/tRNA‑Thr‑GGT
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (32/38);  total (32/38)

GTTATTTCGTTTATCAACGAAAACTTTGAAATACCGTTATTAAAGGGTAGTACGGCGGTACGCGTCAGCTATGCAGAAGTCTTAAGTTCCGGTAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGCACTAGGAGTTCAATATGAGTAAATTAACAAAAGGTACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACGGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTAAGGATTTAAAAGAAAAAGGCATGTTATGAATATTTATACAAAAGCATAAATATTTGTAAGCATAAAAATGGAAAAGTGAACATGAATACTGTAAATG  >  1/780246‑780734
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                  
gttattgagTTTATTAAAGATAACTTTGAAATCCCGTTATTAGAAGGCAGTACAACGGTTCGCGTCAGCTATGCCGAAGTATTAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTa                                                                                                                                                                                                                                                >  1:551538/9‑251 (MQ=255)
            attaaagataaCTTTGAAATTCCGTTATTAGAAGGCAGTACAACGGTTCGCGTCAGCTATGCCGAAGTATTAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCa                                                                                                                                                                                                                                    >  1:585959/10‑251 (MQ=255)
                aagataaCTTTGAAATTCCGTTATTAGAAGGCAGTACAACGGTTCGCGTCAGCTATGCCGAAGTATTAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAaga                                                                                                                                                                                                                                <  1:334682/246‑1 (MQ=255)
                                      attagaaggcagtacaacggTTCGCGTCAGCTATGCCGAAGTATTAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGaacaa                                                                                                                                                                                                          >  1:62875/18‑251 (MQ=255)
                                      attagaaggcagtacaacggTTCGCGTCAGCTATGCCGAAGTATTAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGaacaa                                                                                                                                                                                                          >  1:774542/18‑251 (MQ=255)
                                               cagtacaacggTTCGCGTCAGCTATGCCGAAGTATTAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAacta                                                                                                                                                                                                   >  1:656142/9‑249 (MQ=255)
                                                 gtacaacggTTCGCGTCAGCTATGCCGAAGTATTAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGaacaa                                                                                                                                                                                                          >  1:282902/7‑240 (MQ=255)
                                                 gtacaacggTTCGCGTCAGCTATGCCGAAGTATTAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTAt                                                                                                                                                                                               >  1:164017/7‑251 (MQ=255)
                                                   acaacggTTCGCGTCAGCTATGCCGAAGTATTAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCa                                                                                                                                                                                             <  1:168633/247‑1 (MQ=255)
                                                            cgcgTCAGCTATGCCGAAGTATTAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCgg                                                                                                                                                                                    <  1:584263/251‑1 (MQ=255)
                                                                      aTGCCGAAGTATTAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTa                                                                                                                                                                          >  1:252806/1‑251 (MQ=255)
                                                                         ccgAAGTATTAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTAcc                                                                                                                                                                        <  1:260824/248‑2 (MQ=255)
                                                                            aaGTATTAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAagc                                                                                                                                                                    <  1:336131/251‑1 (MQ=255)
                                                                              gtattAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAaga                                                                                                                                                                                                                                <  1:864486/186‑1 (MQ=255)
                                                                              gtattAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAactac                                                                                                                                                                                                                    >  1:889730/4‑201 (MQ=255)
                                                                              gtattAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAagcag                                                                                                                                                                  >  1:87360/4‑251 (MQ=255)
                                                                              gtattAAGCTCCGGCAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAagc                                                                                                                                                                    <  1:760119/246‑1 (MQ=255)
                                                                                                aCGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTAc                                                                                                                                                <  1:26631/251‑1 (MQ=255)
                                                                                                   gTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATg                                                                                                                                                                                           <  1:577262/205‑1 (MQ=255)
                                                                                                       ttGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGa                                                                                                                                         <  1:142231/251‑1 (MQ=255)
                                                                                                               cagtcTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGa                                                                                                                                         <  1:465331/243‑1 (MQ=255)
                                                                                                                 gtcTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCca                                                                                                                                                                                                                                           >  1:76013/1‑143 (MQ=255)
                                                                                                                 gtcTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGG‑ACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGa                                                                                                                              >  1:256596/1‑251 (MQ=255)
                                                                                                                  tcTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGt                                                                                                                                 <  1:308263/248‑1 (MQ=255)
                                                                                                                  tcTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGt                                                                                                                                 <  1:827321/248‑1 (MQ=255)
                                                                                                                  tcTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGt                                                                                                                                 <  1:113880/248‑1 (MQ=255)
                                                                                                                            cGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAg                                                                                                                                                                                                                                        <  1:633901/135‑1 (MQ=255)
                                                                                                                                aGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAagag                                                                                                                         >  1:718924/1‑242 (MQ=255)
                                                                                                                                aGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTAtttt                                                                                                                   <  1:311172/248‑1 (MQ=255)
                                                                                                                                 gCAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGa                                                                                                                                         >  1:357133/1‑225 (MQ=255)
                                                                                                                                  cAGAGATTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATg                                                                                                               <  1:16501/250‑1 (MQ=255)
                                                                                                                                     agaTTAATCAAATCACAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAagc                                                                                                                                                                    <  1:93273/194‑1 (MQ=255)
                                                                                                                                          aatcaaatcaCAAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCcac                                                                                                                                                                                                                                          >  1:736861/1‑119 (MQ=255)
                                                                                                                                                    caAATGAAATTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCcac                                                                                                                                                                                                                                          <  1:281247/109‑1 (MQ=255)
                                                                                                                                                           aaTTTTAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTAc                                                                                                                                                                         >  1:606836/1‑167 (MQ=255)
                                                                                                                                                                tAACTGTACTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAagc                                                                                                                                                                    >  1:346999/1‑167 (MQ=255)
                                                                                                                                                                   ctgtaCTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGt                                                                                                                                 >  1:87055/5‑199 (MQ=255)
                                                                                                                                                                     gtaCTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGaacaa                                                                                                                                                                                                          >  1:337567/3‑124 (MQ=255)
                                                                                                                                                                     gtaCTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAagc                                                                                                                                                                    <  1:470633/160‑1 (MQ=255)
                                                                                                                                                                     gtaCTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATAcgc                                                                                                                                                     <  1:462719/175‑1 (MQ=255)
                                                                                                                                                                     gtaCTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATAcgc                                                                                                                                                     <  1:353499/175‑1 (MQ=255)
                                                                                                                                                                     gtaCTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGt                                                                                                                                 <  1:835796/195‑1 (MQ=255)
                                                                                                                                                                     gtaCTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGt                                                                                                                                 >  1:596035/3‑197 (MQ=255)
                                                                                                                                                                     gtaCTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGacttactt                                                                                                       >  1:727417/3‑223 (MQ=255)
                                                                                                                                                                     gtaCTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTaa                                                                                                  <  1:663083/226‑1 (MQ=255)
                                                                                                                                                                     gtaCTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTAAGGATTTAAAAGAAAAAGGCATGt                                                                           >  1:333096/3‑251 (MQ=255)
                                                                                                                                                                      taCTAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGa                                                                                                                                         >  1:42646/2‑188 (MQ=255)
                                                                                                                                                                         tAGGAGTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGact                                                                                                            <  1:217918/214‑1 (MQ=255)
                                                                                                                                                                              gTTCAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGa                                                                                                                                         >  1:616642/1‑180 (MQ=255)
                                                                                                                                                                                 cAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGt                                                                                                                                 <  1:347947/185‑1 (MQ=255)
                                                                                                                                                                                 cAATATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAagag                                                                                                                         >  1:384715/1‑193 (MQ=255)
                                                                                                                                                                                  aaTATGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATg                                                                                                               <  1:470705/202‑1 (MQ=255)
                                                                                                                                                                                    tatGAGTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTAAGGATTTAAAAGAAAAAGGCATGTTATGAATATTTATAc                                                            <  1:606528/251‑1 (MQ=255)
                                                                                                                                                                                         gTAAATTAACAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTAAGGATTTAAAAGAAAAAGGc                                                                               >  1:642142/1‑227 (MQ=255)
                                                                                                                                                                                                aaCAAAAGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTaa                                                                                                                 >  1:524582/1‑186 (MQ=255)
                                                                                                                                                                                                     aaGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCgaag                                                                                                                                                             >  1:831695/1‑137 (MQ=255)
                                                                                                                                                                                                     aaGGCACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTAAg                                                                                                 <  1:559776/197‑1 (MQ=255)
                                                                                                                                                                                                      aggcacacTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGt                                                                                                                                 <  1:233333/160‑1 (MQ=255)
                                                                                                                                                                                                         cacacTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTAAGGATTTAAAAGAAAAAGGCATGTTATGAATATTTATACAAAAGCATAAATATTTGTaa                                        <  1:247615/249‑1 (MQ=255)
                                                                                                                                                                                                          acacTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTAAGGATTTaaaa                                                                                        <  1:205571/201‑1 (MQ=255)
                                                                                                                                                                                                           cacTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGa                                                                                                                                         >  1:664019/1‑151 (MQ=255)
                                                                                                                                                                                                           cacTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTAAGGATTTAAAAGAAAAAGGCATGTTATGAATATTTATACAAAAGCATAAATATTTGTAAGCa                                     >  1:894550/1‑251 (MQ=255)
                                                                                                                                                                                                               aaGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTAAGGATTTAAAAGAAAAAGGCATGTTATGAATATTtat                                                              >  1:669786/1‑222 (MQ=255)
                                                                                                                                                                                                                       ccGGGCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTAAGGATTTAAAAGAAAAAGGCATGTTATGAATATTTATACAAAAGCATAAATATTTGTAAGCATAAAAATGGaaa                         <  1:360340/251‑1 (MQ=255)
                                                                                                                                                                                                                          ggCTTTCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTaa                                                                                                                 <  1:783153/160‑1 (MQ=255)
                                                                                                                                                                                                                              ttCTATGGGTAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATg                                                                                                                                                                                           <  1:901702/82‑1 (MQ=255)
                                                                                                                                                                                                                                       tAGCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGGGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTAAGGATTTAAAAGAAAAAGGCATGTTATGAATATTTATACAAAAGCATAAATATTTGTAAGCATAAAAATGGAAAAGTGAACATGAATAc          <  1:424505/250‑1 (MQ=255)
                                                                                                                                                                                                                                         gCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGACGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGt                                                                                                                                 >  1:700900/1‑129 (MQ=255)
                                                                                                                                                                                                                                         gCATTGAAAAAACAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTAAGGAt                                                                                              <  1:497460/164‑1 (MQ=255)
                                                                                                                                                                                                                                               aaaaaaCAGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTAAGGATTTAAAAGAAAAAGGCATGTTATGAATATTTATACAAAAGCATAAATATTTGTAAGCATAAAAATGGAAAAGTGAACATGAATACTGTAAATg  <  1:106016/250‑1 (MQ=255)
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                  
GTTATTTCGTTTATCAACGAAAACTTTGAAATACCGTTATTAAAGGGTAGTACGGCGGTACGCGTCAGCTATGCAGAAGTCTTAAGTTCCGGTAATACGGTTTTTGAAAGTCAGTCTAAAGAAGCGAAAGCAGAGATTAATCAAATCACAAATGAAATTTTAACTGCACTAGGAGTTCAATATGAGTAAATTAACAAAAGGTACACTAAGCAAATCCGGGCTTTCTATGGGTAGCATTGAAAAAACGGCTATGCCACAGCTCAAAGAGGAAGTAACTACTGCCGAACAACGAACTACTATCATGATTCCGGTGGATATTTACAAAGCAGCGAAGAAATACGCGTTACTTAATGATATTAAGTTGAAAGAGTATTTTAATGACTTACTTAGTAAGGATTTAAAAGAAAAAGGCATGTTATGAATATTTATACAAAAGCATAAATATTTGTAAGCATAAAAATGGAAAAGTGAACATGAATACTGTAAATG  >  1/780246‑780734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑