| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 577,273 | G→T | intergenic (+86358/‑119435) | unknown → / → unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 577,273 | 0 | G | T | 100.0% | 320.7 / NA | 89 | intergenic (+86358/‑119435) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (40/49); total (40/49) | |||||||||||
ATTTTGCCCCATAACCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCGCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGCGATACCGCAAAGCTGGCACGCCATTG > 1/577036‑577516 | aTTTTGCCCCATAACCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAatat > 1:348544/1‑249 (MQ=255) ccccATAACCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTggg < 1:658043/251‑1 (MQ=255) ccATAACCTGAACCTTCAGGAATGTGAGGAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTgggg > 1:89638/1‑250 (MQ=255) aCCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGc > 1:888780/1‑250 (MQ=255) cTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATAtttttt < 1:263234/233‑1 (MQ=255) gAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAAc < 1:542117/249‑1 (MQ=255) aaTGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGc < 1:767374/250‑1 (MQ=255) tgtgAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCgt > 1:239443/1‑251 (MQ=255) gtgAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCgtg > 1:819917/1‑251 (MQ=255) gTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAAt < 1:195862/232‑1 (MQ=255) tGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTtata < 1:477442/248‑1 (MQ=255) tGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTatat < 1:166145/249‑1 (MQ=255) tGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATc < 1:333320/250‑1 (MQ=255) cTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGCTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAAc < 1:453395/249‑1 (MQ=255) tAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTta < 1:40536/233‑1 (MQ=255) aCGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCtg < 1:122882/251‑1 (MQ=255) cGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTacaa < 1:797332/251‑1 (MQ=255) aTTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTacaaca > 1:143638/1‑251 (MQ=255) aCCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAAtt < 1:744281/251‑1 (MQ=255) aCCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAAtt < 1:589853/251‑1 (MQ=255) ccGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTtata > 1:874645/1‑211 (MQ=255) ccGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTtata > 1:885537/1‑211 (MQ=255) gAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACa > 1:618732/1‑251 (MQ=255) gtgtGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGAGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCaaa > 1:431735/1‑250 (MQ=255) gtgGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATAtttt < 1:315443/163‑1 (MQ=255) gtgGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAAcc > 1:62511/1‑250 (MQ=255) gTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATc > 1:340668/1‑200 (MQ=255) gTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCaaa > 1:507798/1‑251 (MQ=255) tGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGc < 1:7622/251‑1 (MQ=255) tGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGc < 1:367316/251‑1 (MQ=255) gACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGc < 1:334892/250‑1 (MQ=255) cTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGc < 1:281952/180‑1 (MQ=255) ccACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAAc < 1:713924/250‑1 (MQ=255) ccACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACg < 1:4712/251‑1 (MQ=255) cacaCCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGc < 1:371264/251‑1 (MQ=255) ccGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATc > 1:290837/1‑181 (MQ=255) ccGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATc > 1:334139/1‑181 (MQ=255) ccGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAAc > 1:58072/1‑245 (MQ=255) ccGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAggg > 1:105518/1‑251 (MQ=255) ccGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAggg > 1:626159/1‑251 (MQ=255) aaaCAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCa > 1:599190/1‑176 (MQ=255) ggCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGAc < 1:50120/248‑1 (MQ=255) ggCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGAc < 1:153296/248‑1 (MQ=255) cGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCaa > 1:389741/1‑207 (MQ=255) gTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTgg > 1:619789/1‑251 (MQ=255) gTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTgg > 1:825778/1‑251 (MQ=255) aGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGgcg > 1:272141/1‑250 (MQ=255) atatTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAAtt < 1:877338/193‑1 (MQ=255) atatTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCaa > 1:839343/1‑251 (MQ=255) ttGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGc < 1:566878/251‑1 (MQ=255) ccATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCaa > 1:861230/1‑251 (MQ=255) cATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAAc < 1:444510/251‑1 (MQ=255) ttAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGc > 1:887501/1‑186 (MQ=255) ccACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGc < 1:237844/183‑1 (MQ=255) ccACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCg < 1:536077/251‑1 (MQ=255) ccACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCg > 1:687452/1‑251 (MQ=255) gAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGtt > 1:507249/1‑232 (MQ=255) gAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCa > 1:258969/1‑251 (MQ=255) atatTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTgg < 1:888486/212‑1 (MQ=255) atTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGc > 1:802083/1‑174 (MQ=255) atTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGgtg > 1:31906/1‑251 (MQ=255) aacaacTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCtat < 1:230590/251‑1 (MQ=255) caacTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCtatta < 1:76548/251‑1 (MQ=255) caacTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCtatta < 1:727621/251‑1 (MQ=255) acTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCg > 1:274735/1‑232 (MQ=255) cTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCTATTATCa < 1:299491/251‑1 (MQ=255) cTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCTATTATCa < 1:334888/251‑1 (MQ=255) aTGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCta > 1:818547/1‑242 (MQ=255) aTGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCTATTATCAAAc < 1:618013/251‑1 (MQ=255) aTTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTtat < 1:333146/91‑1 (MQ=255) cGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAgg < 1:80669/251‑1 (MQ=255) cGTGTTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAgg < 1:865981/251‑1 (MQ=255) gtgtTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTacaa < 1:599932/117‑1 (MQ=255) gtgtTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAAtt < 1:814996/125‑1 (MQ=255) gtgtTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAAcc < 1:457649/163‑1 (MQ=255) gtgtTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCtatta < 1:874477/227‑1 (MQ=255) gtgtTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAgg > 1:325679/1‑250 (MQ=255) gtgtTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAgg > 1:593226/1‑250 (MQ=255) gtTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCa < 1:540772/87‑1 (MQ=255) gtTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCagaag > 1:53587/1‑203 (MQ=255) gtTAGACAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCagaa > 1:741249/1‑202 (MQ=255) aCAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGCGATAcc < 1:592377/250‑1 (MQ=255) aCAACGCGGCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGCGATAc < 1:284435/249‑1 (MQ=255) gCAAAAGCGATGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCa < 1:670272/176‑1 (MQ=255) aTGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCtggtgg > 1:331736/1‑88 (MQ=255) aTGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGc < 1:346112/176‑1 (MQ=255) aTGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCta < 1:503243/200‑1 (MQ=255) aTGTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGc > 1:732377/1‑227 (MQ=255) gTTACGCTCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGCGATACCGCAAAGCTGGCACGCCATTg > 1:192434/1‑251 (MQ=255) | ATTTTGCCCCATAACCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGTGTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAGAATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCGCGGCGGAATATTTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGTGGTACAACACAAATTACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAGAACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGCGATACCGCAAAGCTGGCACGCCATTG > 1/577036‑577516 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |