| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 445,706 | 0 | C | G | 44.8% | 21.6 / 12.7 | 30 | intergenic (+69/‑66) | unknown/unknown | Hydrogenase‑4 component I/Hydrogenase‑4 maturation protease |
| Reads supporting (aligned to +/- strand): ref base C (12/4); new base G (8/5); total (21/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.88e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTTATCGCCAGGGTGGCAATATCGCCAATCAATTTATGGCGATGATGTCGGAAGATGACAGCGTGCCGTTC‑GGTGTGCGTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGTCCTG‑TG‑CCCG‑CCC‑GAATTTAC‑G‑TTT‑GGATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGT > 1/445468‑445947 | gTTATCGCCAGGGTGGCAATATCGCCAATCAATTTATGGCGATGATGTCGGAAGATGACAGCGTGCCGTTC‑GGTGTGCGTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGGCCTG‑TG‑GCCG‑CCC‑GCATTTTC‑G‑TTT‑TGGTAATgggcgggggcaggag > 1:44150/1‑242 (MQ=255) ttATCGCCAGGGTGGCAATATCGCCAATCAATTTATGGCGATGATGTCGGAAGATGACAGCGTGCCGTTC‑GGTGTGCGTTGAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGTCCTG‑TG‑CCCG‑CCC‑GAATTTAC‑G‑TTT‑GGATAATGGGCGGGC‑ACA‑GGAcc < 1:441037/250‑1 (MQ=255) tCGCCAGGGTGGCAATATCGCCAATCAATTTATGGCGATGATGTCGGAAGATGACAGCGTGCCGTTC‑GGTGTGCGTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGTCCTG‑TG‑CCCG‑CCC‑GAATTTAC‑G‑TTT‑GGATAATGGGCGGGC‑ACA‑GGACCCGcc < 1:259864/251‑1 (MQ=255) cccgcaaataattttagggggatgatGTGGGAAGATGA‑GGGGGGCCGTTGGGGTGTGCGTTTGGGGAAATCCCGGGAAGGGGAAGGGGATCCGCGCGTGAGAAAAAT‑CGACACCCGTCGGCATGCAATTAGTATGCCGTTTGGGGGGTAAGTTATGGG‑CTTACATTCCCCCGGGGGGGGGGGTCCTG‑TG‑CCCG‑CCC‑GAATTTCC‑G‑TTG‑GGATAAGGGGGGGGC‑TCA‑GGACCCGCCCCTACAAAAGCAActc < 1:100806/231‑1 (MQ=255) atTTATGGCGATGATGTCGGAAGATGACAGCGTGCCGTTC‑GGTGTGCGTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGGCCTG‑TG‑GCCG‑CCCGGAATTTA‑‑G‑TTT‑TGGTAAAGGGGGGGG‑ACA‑GGAcccccccccccaaaaaacaatcttgttgtttgg > 1:28201/1‑226 (MQ=255) atTTATGGCGATGATGTCGGAAGATGACAGCGTGCCGTTC‑GGTGTGCGTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGGCCTG‑TG‑CCCG‑CCC‑CGATTTTC‑G‑TTT‑TGGTAAATGGCGGGG‑ACA‑GGAcccccccccccaaaaaacaacccgtttctttga > 1:734981/1‑226 (MQ=255) cgagggtgTCGGAGGATGACGGCGTGCGGTTC‑GGTGTGCGTTGGGGGAAATCCGTGGGACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGACACCCGTCTGCATGCCTTTTGTAGGCCTTTTGCGGGGTAAGTTATTGG‑CTTACTTTCTCCGGTAGGGGGGGTTCCTG‑TG‑CCCG‑CCC‑GATTTTAC‑G‑TGT‑GGATAAGGGGGGGGC‑AGA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGc < 1:901129/245‑1 (MQ=255) atgTCGGAAGATGACAGCGTGCCGTTC‑GGTGTGCGTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGCCCTG‑TG‑CCCGCCCC‑GAA‑TTAC‑GCTTT‑GG‑TAAAGGGGGGGC‑CGA‑GGGCCCCCCCCCCCAAAAACAAATCTGTTGCTTAGATGGaaaaaagtaa > 1:483677/1‑244 (MQ=255) gTGCCGTTC‑GGTGTGCGTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGGCCCG‑TG‑GCCGCCCC‑CAATTT‑C‑G‑TTT‑TGGTAAAAGGGGGGC‑GCA‑GGACCCCCCCCCCCAAAAAAAACACTGTTTCTTTGATGTAAAAAAGTAAGGACggagcctttctctt > 1:861987/1‑238 (MQ=255) gggcggttgggtgggctttggggggAATCCCTGGAGGGGGAGGCGGACCCGCGCCGGAGC‑AAATCCGCCACCCGTCTGCTTCCCTTTAGTTTGCTGTTTGGGGGTTAATTTTTTGG‑CTTCCTTTCCCCCGGGGGGGGGGGTCCTG‑CC‑CCCG‑CCC‑AATTTTCC‑T‑TTT‑GAATAAGGGGGGGGC‑ACA‑GGCCCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGaccac < 1:239164/229‑1 (MQ=255) ccGTTC‑GGTGTGCGTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGTCCCG‑TG‑CCCC‑CCC‑CCATTTTCGG‑TTT‑GGTAAATGGG‑GGGC‑ACA‑AGACCCCCCCCCCCAAAAACAACTCTTTTGCTTTGATGTAAAGCAGGAAGGACGGATCATTaccacccca > 1:42518/1‑248 (MQ=255) ccGTTC‑GGTGTGCGTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGGCCTG‑TG‑CCCG‑CCC‑GAATTTAC‑G‑TTT‑GGATAAAGGGCGGGC‑ACA‑GGACCCCCCCCCCCAAAAACAAACCTGTTGCTTAGATGTAAAACAGTAAGGACGGATCATGaccacccta > 1:513918/1‑248 (MQ=255) gtgtGCGTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGTCCTG‑TG‑CCCG‑CCC‑GAATTTAC‑G‑TTT‑GGATAATGGGCGGGC‑ACA‑g > 1:489523/1‑175 (MQ=255) gtgtGCGTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGGCCCG‑TGCCCCC‑CCC‑GAATTT‑C‑G‑TTT‑GGGTAATTGGCGGGG‑ACC‑GGACCCCCCCCCCCAAAAACAACTCTTATTCTTAGATGTAAAGCAGGAAAGACGGATCATGAACACCCTAatctttt > 1:756094/1‑249 (MQ=255) gCGTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTGAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGTCCCG‑TG‑CCCG‑CCC‑GCATTTTC‑G‑TTT‑TGGTAATGGGGGGGC‑ACA‑AGAACCCCCCCCACAAAAAAAAACCTGTTTCTTTGATGTAAAACAGGAAAGAAGGATCATTAACACCCTAatcttttat > 1:536486/1‑249 (MQ=255) gCGTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGGCCCG‑TG‑CCCC‑CCC‑CGATTTTC‑G‑TTT‑TGTTTATGGGCGGGC‑ACA‑GGACCCGCCCCCACCAAAACAAATCTGTTTCTTTGATGTAAAACAGGAAGGACGGATCacctgctctttttcacaactcc > 1:301716/1‑229 (MQ=255) gTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGGCCTG‑TG‑CCCG‑CCC‑CGATTTAC‑G‑GTT‑TGATAATGGGGGGGC‑ACA‑GGACCCCCCCCCCCCAAAACAACACTGTTGGTTTGATGTAAAAGAGGAAAGACGGAACATTAACACCGCAaacttctatcttt > 1:742703/1‑250 (MQ=255) ggagAAAT‑CGTCACCCGTCTGCATGCAATTAGTAGGCCTTTTTGGGGGT‑AGTTTTTGGTCTTACTTTCCCCGGGGGGGGGGGGTCGTG‑CC‑CCCG‑‑CC‑AAATTTTG‑G‑TTTGGGAT‑AGGGGGGGGC‑AAAGGGCCCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGa < 1:210994/247‑1 (MQ=255) cGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGTCCCG‑GG‑GCCC‑CCC‑GAAATTTC‑G‑TTT‑TGCTAAAAGGGGGGC‑GCA‑GGACCCCCCCCCCCAAAACCAACTCCGTTTGTTAGATGTTAAAAAGAAAGAACGTCTCATGACCCCCCCAAAATTTTATCTTCTCCACGAACGC‑CTTTTCGAAAACgaagaaaaaaggcaggggccagcgc > 1:444691/1‑231 (MQ=255) gggTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGTCCTT‑TT‑CCCC‑CCC‑CAATTTTA‑G‑TTT‑TGATAAAGGGGGGGG‑GCA‑GGGCCCCCCCCCCCAAAAACAAATCTGTTGTTTTGATGTAAAAGAGGAAAGACGTATCATTACCACCCCCATCTTCTTTCTTCTCAACGAACCC‑TTTTTTGAAAAAGAAGAAAAAATGCAGGGGGAGGGGCCGCAAGTAATGAATTACTCTTTTGCAATCGGGCACCAt > 1:125069/1‑251 (MQ=255) gg‑CTTACATTCTCCCGTAGGGGCGGGGCCTGTTG‑CCC‑‑CCC‑GAAATTTC‑G‑TTT‑TGGTAATGGGGGGGG‑ACA‑GGACCCCCCCCCCCCAAAACAAATCTCTTGCTTTGATGTAAAGCCATGAGGGCGGATCATTACCACCCTCATATTCTTTTTTCTTTACAAAAGCTTTTTTCGAAAA‑GAAGAAAAAGTGCCAGAGCAGGCGCAGCAAGGAATGTATTACTCTTTTGCAATAGGTCCCCACGTGGGtgtggtt > 1:876055/1‑248 (MQ=255) ggtttACTTTCCCCCGTGGGGGCGGGTCCGG‑CC‑CCCG‑CCA‑GATTTTAT‑T‑TTT‑GAAAAAGGGGCGGGC‑ACA‑GGCCCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGtgat < 1:131283/247‑1 (MQ=255) ttttacttcccccggggggggCGGGTCCTG‑GC‑CCCG‑CCT‑GATTTTAG‑G‑TTT‑GGATAA‑GGGGGGGCAACG‑GGCCCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGtgattg < 1:799218/234‑1 (MQ=255) ggCGGGTCCTG‑TG‑CCCG‑CCC‑GAATTTAC‑G‑TTT‑GGATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAatcttctatct > 1:54269/1‑131 (MQ=255) ggTCCTG‑TG‑CCCG‑CCC‑GAATTTAC‑G‑TTT‑GGATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTActc > 1:272364/1‑196 (MQ=255) gTCCTG‑TG‑CCCG‑CCC‑GAATTTAC‑G‑TTT‑GGATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCAtg > 1:565525/1‑215 (MQ=255) cccattatccaaacgtaaattcgggcgggc‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAgg > 1:633978/23‑251 (MQ=255) ttt‑GGATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGa > 1:679448/1‑240 (MQ=255) ggATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATcaac > 1:482715/1‑245 (MQ=255) gATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGa > 1:361607/1‑236 (MQ=255) gATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGt > 1:143269/1‑251 (MQ=255) gATAAGGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGt < 1:852399/160‑1 (MQ=255) ggcgggc‑ACG‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGtgat < 1:28545/190‑1 (MQ=255) ggcgggc‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGa > 1:757883/1‑229 (MQ=255) | GTTATCGCCAGGGTGGCAATATCGCCAATCAATTTATGGCGATGATGTCGGAAGATGACAGCGTGCCGTTC‑GGTGTGCGTTTAGGGGAATACCTGGAACGGGAAGCGGATCCGCGCCTGAGCGAAAT‑CGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGTCCTG‑TG‑CCCG‑CCC‑GAATTTAC‑G‑TTT‑GGATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGT > 1/445468‑445947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |