Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	2,156,752	0	T	C	72.5%	70.4 / 33.3	51	I20T (ATC→ACC)	unknown	Mobile element protein
Reads supporting (aligned to +/- strand):  ref base T (1/13);  new base C (14/23);  total (15/36)
Fisher's exact test for biased strand distribution p-value = 4.11e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CCCTAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGGTTAAGTTAATTATTGGCTGGATAGCTAAAAATTCAG  >  1/2156502‑2156983                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                        cccTAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTAt                                                                                                                                                                                                                                         >  1:318361/1‑251 (MQ=31) cccTAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTAt                                                                                                                                                                                                                                         >  1:759323/1‑251 (MQ=31) cccTAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTAt                                                                                                                                                                                                                                         >  1:509895/1‑251 (MQ=31)   cTAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCGTTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCt                                                                                                                                                                                                                                       <  1:756739/251‑1 (MQ=14)   cTAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCt                                                                                                                                                                                                                                       <  1:323426/251‑1 (MQ=31)   cTAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCt                                                                                                                                                                                                                                       <  1:408664/251‑1 (MQ=31)   cTAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCt                                                                                                                                                                                                                                       <  1:285936/251‑1 (MQ=31)   cTAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCt                                                                                                                                                                                                                                       <  1:464142/251‑1 (MQ=31)    tAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCtt                                                                                                                                                                                                                                      <  1:796327/251‑1 (MQ=31)        aTAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCTTttat                                                                                                                                                                                                                                  <  1:214311/251‑1 (MQ=31)                      gATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCTTTTATTATc                                                                                                                                                                                                                              <  1:528734/241‑1 (MQ=31)                          aaaaaGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCTTTTATTATCAGCAAGTTAAacac                                                                                                                                                                                                                <  1:178506/251‑1 (MQ=31)                                             tCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAg                                                                                                                                                                                             >  1:499718/1‑251 (MQ=31)                                             tCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAg                                                                                                                                                                                             <  1:852607/251‑1 (MQ=31)                                                  gAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAAc                                                                                                                                                                                         <  1:481756/250‑1 (MQ=31)                                                     caaacaGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATc                                                                                                                                                                                     <  1:660947/251‑1 (MQ=31)                                                                   cccAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATaa                                                                                                                                                                       <  1:685128/251‑1 (MQ=31)                                                                                                                                        gTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGtttt                                                                                                  >  1:143685/1‑251 (MQ=17)                                                                                                                                         ttGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTc                                                                                                 <  1:270747/251‑1 (MQ=17)                                                                                                                                                cACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACtctc                                                                                           <  1:623980/250‑1 (MQ=25)                                                                                                                                                cACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTcc                                                                                          <  1:363860/251‑1 (MQ=25)                                                                                                                                                      aCCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTgg                                                                                     <  1:387144/250‑1 (MQ=38)                                                                                                                                                       ccGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGTCACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTc                                                                                   <  1:137933/251‑1 (MQ=255)                                                                                                                                                       ccGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTc                                                                                   <  1:344850/251‑1 (MQ=39)                                                                                                                                                       ccGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTc                                                                                   <  1:299261/251‑1 (MQ=39)                                                                                                                                                         gTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCtt                                                                                 >  1:53380/1‑251 (MQ=255)                                                                                                                                                            aaaaaCAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCAt                                                                              <  1:773209/251‑1 (MQ=255)                                                                                                                                                             aaaaCAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCAtt                                                                             <  1:252751/251‑1 (MQ=255)                                                                                                                                                               aaCAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCAc                                                                                               >  1:595492/1‑231 (MQ=18)                                                                                                                                                                          aaaaaagaaaaaTCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGatt                                                                   <  1:156308/248‑1 (MQ=255)                                                                                                                                                                                           gAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCttt                                                                                       <  1:285715/211‑1 (MQ=39)                                                                                                                                                                                                  tGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTAt                                        <  1:176413/251‑1 (MQ=255)                                                                                                                                                                                                  tGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTCCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTAt                                        <  1:800668/251‑1 (MQ=255)                                                                                                                                                                                                    aaGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATGGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATgg                                      <  1:193229/251‑1 (MQ=255)                                                                                                                                                                                                       ccAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGgtta                                   <  1:167626/251‑1 (MQ=255)                                                                                                                                                                                                       ccAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGgt                                     <  1:260296/249‑1 (MQ=255)                                                                                                                                                                                                       ccAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGgt                                     <  1:431771/249‑1 (MQ=255)                                                                                                                                                                                                           aTCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGgt                                     <  1:294743/245‑1 (MQ=255)                                                                                                                                                                                                                 cgTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCAc                                                                                               >  1:29686/1‑181 (MQ=25)                                                                                                                                                                                                                 cgTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGGTTAAGTTAattat                         <  1:252265/251‑1 (MQ=255)                                                                                                                                                                                                                   ttAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGgtta                                   >  1:493370/1‑239 (MQ=255)                                                                                                                                                                                                                   ttAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGGTTAAGTTAATTATTg                       >  1:133656/1‑251 (MQ=255)                                                                                                                                                                                                                         gACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCActc                                                                                             <  1:174067/175‑1 (MQ=37)                                                                                                                                                                                                                         gACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTAt                                        >  1:856436/1‑228 (MQ=255)                                                                                                                                                                                                                         gACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTAt                                        >  1:507734/1‑228 (MQ=255)                                                                                                                                                                                                                         gACTTACTTCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGGTTAAGTTAattat                         <  1:497429/243‑1 (MQ=255)                                                                                                                                                                                                                             tacttCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTAt                                        >  1:596039/1‑224 (MQ=255)                                                                                                                                                                                                                             tacttCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGgt                                     <  1:727436/227‑1 (MQ=255)                                                                                                                                                                                                                             tacttCGTGTGGCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGGTTAAGTTAATTATTGGCTGGATAg              >  1:319454/1‑250 (MQ=255)                                                                                                                                                                                                                                        gCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGGTTAAGTTAATTATTGGCTGGATAGCTAAAAATTCAg  >  1:560324/1‑251 (MQ=255)                                                                                                                                                                                                                                        gCTAAAATGCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGGTTAAGTTAATTATCGGCtttaatcg             >  1:200717/1‑233 (MQ=255)                                                                                                                                                                                                                                                gCCTCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGGTTAAGTTAATTATTGGCTGGAt                >  1:330411/1‑229 (MQ=255)                                                                                                                                                                                                                                                   tCGTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGgt                                     <  1:14555/205‑1 (MQ=255)                                                                                                                                                                                                                                                     gTTCTACCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTAt                                        >  1:779945/1‑200 (MQ=255)                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                        CCCTAAAATAGTGAAGCCAAAGATGAAAAAGAAAGCGATTGAAATCCCGGAACAAACAGACTTTTCCCCAAAAGCGTTTAAAAAGCTGCAGCGAGAGCTGGCATTAGCACGTGCACAGATTGCTTACCTAAAGGAGTTGGAGGCACTCGACCGTCAAAAACAGCGACAGAAAAAAGAAAAATCATTGAAAGATTGAAGCCAAATCACGCGTTAAATGACTTACTTCGTGTGGCTAAAATGCCTCGTTCTATCTTTTATTATCAGCAAGTTAAACACGATTATCGTGAGATAAAAGAAACTATCTTGTTGCGGTATAAAAAGAACAGAAAACGAGATGGCTATCGCCCAATGACACTCAAATTACGTCAAATGGGTTCTCCTGTTTTCACTCTCCTTTGGTCTTCATTGGCTTTGATTATTATTCTTTCGGCGTAGGTGGTGTATGGTTAAGTTAATTATTGGCTGGATAGCTAAAAATTCAG  >  1/2156502‑2156983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑