Predicted mutation
evidence seq id position mutation annotation gene description
RA CP028101 336,797 1 bp→TTT noncoding (27/1558 nt) C7Y58_01750 ← 16S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP028101336,7970AT100.0% 48.3 / NA 26noncoding (27/1558 nt)C7Y58_0175016S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (18/8);  total (18/8)
*CP028101336,7971.T92.3% 41.0 / 0.1 26noncoding (27/1558 nt)C7Y58_0175016S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base . (0/2);  new base T (18/6);  total (18/8)
Fisher's exact test for biased strand distribution p-value = 8.62e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.11e-01
*CP028101336,7972.T92.3% 42.4 / 0.1 26noncoding (27/1558 nt)C7Y58_0175016S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base . (0/2);  new base T (18/6);  total (18/8)
Fisher's exact test for biased strand distribution p-value = 8.62e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.86e-01

CAAATTCAAGTAGACTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTA‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACTTATTAT  >  CP028101/336714‑337049
                                                                                   |||||                                                                                                                                                                                                                                                          
cAAATTCAAGTAGACTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAatttttttattt                                                                                         <  1:240454/251‑1 (MQ=2)
      cAAGTAGACTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTc                                                                                   <  1:537086/251‑1 (MQ=9)
            gACTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCa                                                                             >  2:845133/1‑251 (MQ=9)
            gACTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCa                                                                             >  1:337216/1‑251 (MQ=9)
             aCTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTGTGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCat                                                                            >  2:568123/1‑251 (MQ=9)
              cTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATTAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCatt                                                                           >  2:259627/1‑251 (MQ=9)
                tGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCatttt                                                                         >  2:122931/1‑250 (MQ=9)
                     gtgtTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTAttttt                                                                    >  1:303473/1‑251 (MQ=9)
                       gtTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGTTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTGATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTa                                                                   >  1:815789/1‑250 (MQ=255)
                       gtTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATGTTTTTTTATTTTTTTTCAATATTTTTATTTTTCTTCTTACCATTTATTTTTa                                                                   >  1:619243/1‑250 (MQ=11)
                         tAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACtt                                                                >  2:171744/1‑251 (MQ=9)
                               ttCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCATTTTTTTTATTTTTTTTCTTACCatttatt                                                                       >  2:32246/1‑238 (MQ=12)
                               ttCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCatttatt                                                                       <  1:32246/238‑1 (MQ=12)
                               ttCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTAttt                                                          <  2:635266/251‑1 (MQ=9)
                                   gTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTcaa                                                      >  2:445653/1‑251 (MQ=9)
                                       gCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACaaa                                                  >  2:244789/1‑251 (MQ=9)
                                        cGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACaaaa                                                 >  2:451459/1‑251 (MQ=9)
                                          ttCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACaaaaaa                                               >  1:513200/1‑251 (MQ=9)
                                              tCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAGCAATAGTTTTTTATTTTTTTTAAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAAt                                             >  1:708688/1‑249 (MQ=11)
                                              tCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAAt                                             >  1:908524/1‑249 (MQ=12)
                                                  gAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGAc                                        >  2:556454/1‑250 (MQ=255)
                                                   aGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCGCATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGAcc                                       <  1:298310/250‑1 (MQ=255)
                                                         gATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAAc                                  <  1:212971/249‑1 (MQ=255)
                                                                     cGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTGACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTGTTATTTTTTTTCTTACCATTTGTTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCtt                    >  1:649663/1‑251 (MQ=14)
                                                                       caatctttttttt‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTtatat                <  1:126792/244‑1 (MQ=255)
                                                                       caatctttttttt‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTtatat                <  2:418048/244‑1 (MQ=255)
                                                                       caatctttttttt‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTtatat                <  1:445653/244‑1 (MQ=255)
                                                                       caatctttttttt‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATCGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTtatat                <  1:644852/244‑1 (MQ=255)
                                                                              tttttt‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAAc         <  2:260179/251‑1 (MQ=255)
                                                                              tttttt‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAAc         <  1:508902/251‑1 (MQ=255)
                                                                               ttttT‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACt        <  2:439421/251‑1 (MQ=255)
                                                                               ttttT‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTT‑ATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACtt       <  1:82495/251‑1 (MQ=255)
                                                                                       tAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACTtattat  <  1:122931/251‑1 (MQ=255)
                                                                                       tAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATACCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACTtattat  <  2:619243/251‑1 (MQ=255)
                                                                                       tAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATGCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACTtattat  <  2:554165/251‑1 (MQ=255)
                                                                                       tAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTCTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACTtattat  <  1:799781/251‑1 (MQ=255)
                                                                                       tAGCTCATCTTTGCTAGCTTATTTAAAAACAAATTTTATGGGGGCGTTTTTGTAGGGGAGCTATTCTGTGGCGAATGTCCTTGTCACATTGACATAAAGGAGATTAACAGGAGGAATAGTTTTGGGAAAAAATATTTGGGGAGGTTTTTTCAAGTTGGTTATTTTTTTGAGGACCATTTATTTTTACTTTTATGTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACttaggat  <  1:270539/251‑5 (MQ=255)
                                                                                   |||||                                                                                                                                                                                                                                                          
CAAATTCAAGTAGACTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTA‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACTTATTAT  >  CP028101/336714‑337049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑