| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP028101 | 336,797 | 1 bp→TTT | noncoding (27/1558 nt) | C7Y58_01750 ← | 16S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP028101 | 336,797 | 0 | A | T | 100.0% | 48.3 / NA | 26 | noncoding (27/1558 nt) | C7Y58_01750 | 16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (18/8); total (18/8) | |||||||||||
| * | CP028101 | 336,797 | 1 | . | T | 92.3% | 41.0 / 0.1 | 26 | noncoding (27/1558 nt) | C7Y58_01750 | 16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base T (18/6); total (18/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.62e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.11e-01 | |||||||||||
| * | CP028101 | 336,797 | 2 | . | T | 92.3% | 42.4 / 0.1 | 26 | noncoding (27/1558 nt) | C7Y58_01750 | 16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base T (18/6); total (18/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.62e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.86e-01 | |||||||||||
CAAATTCAAGTAGACTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTA‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACTTATTAT > CP028101/336714‑337049 ||||| cAAATTCAAGTAGACTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAatttttttattt < 1:240454/251‑1 (MQ=2) cAAGTAGACTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTc < 1:537086/251‑1 (MQ=9) gACTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCa > 2:845133/1‑251 (MQ=9) gACTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCa > 1:337216/1‑251 (MQ=9) aCTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTGTGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCat > 2:568123/1‑251 (MQ=9) cTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATTAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCatt > 2:259627/1‑251 (MQ=9) tGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCatttt > 2:122931/1‑250 (MQ=9) gtgtTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTAttttt > 1:303473/1‑251 (MQ=9) gtTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGTTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTGATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTa > 1:815789/1‑250 (MQ=255) gtTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATGTTTTTTTATTTTTTTTCAATATTTTTATTTTTCTTCTTACCATTTATTTTTa > 1:619243/1‑250 (MQ=11) tAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACtt > 2:171744/1‑251 (MQ=9) ttCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCATTTTTTTTATTTTTTTTCTTACCatttatt > 2:32246/1‑238 (MQ=12) ttCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCatttatt < 1:32246/238‑1 (MQ=12) ttCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTAttt < 2:635266/251‑1 (MQ=9) gTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTcaa > 2:445653/1‑251 (MQ=9) gCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACaaa > 2:244789/1‑251 (MQ=9) cGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACaaaa > 2:451459/1‑251 (MQ=9) ttCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACaaaaaa > 1:513200/1‑251 (MQ=9) tCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAGCAATAGTTTTTTATTTTTTTTAAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAAt > 1:708688/1‑249 (MQ=11) tCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAAt > 1:908524/1‑249 (MQ=12) gAGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGAc > 2:556454/1‑250 (MQ=255) aGCCAGGATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCGCATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGAcc < 1:298310/250‑1 (MQ=255) gATCAAACTCTTCGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAAc < 1:212971/249‑1 (MQ=255) cGTTCAATCTTTTTTTTATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTGACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTGTTATTTTTTTTCTTACCATTTGTTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCtt > 1:649663/1‑251 (MQ=14) caatctttttttt‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTtatat < 1:126792/244‑1 (MQ=255) caatctttttttt‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTtatat < 2:418048/244‑1 (MQ=255) caatctttttttt‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTtatat < 1:445653/244‑1 (MQ=255) caatctttttttt‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATCGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTtatat < 1:644852/244‑1 (MQ=255) tttttt‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAAc < 2:260179/251‑1 (MQ=255) tttttt‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAAc < 1:508902/251‑1 (MQ=255) ttttT‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACt < 2:439421/251‑1 (MQ=255) ttttT‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTT‑ATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACtt < 1:82495/251‑1 (MQ=255) tAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACTtattat < 1:122931/251‑1 (MQ=255) tAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATACCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACTtattat < 2:619243/251‑1 (MQ=255) tAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATGCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACTtattat < 2:554165/251‑1 (MQ=255) tAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTCTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACTtattat < 1:799781/251‑1 (MQ=255) tAGCTCATCTTTGCTAGCTTATTTAAAAACAAATTTTATGGGGGCGTTTTTGTAGGGGAGCTATTCTGTGGCGAATGTCCTTGTCACATTGACATAAAGGAGATTAACAGGAGGAATAGTTTTGGGAAAAAATATTTGGGGAGGTTTTTTCAAGTTGGTTATTTTTTTGAGGACCATTTATTTTTACTTTTATGTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACttaggat < 1:270539/251‑5 (MQ=255) ||||| CAAATTCAAGTAGACTTGCATGTGTTAAGCATTCTGTCAGCGTTCATCCTGAGCCAGGATCAAACTCTTCGTTCAATCTTTTTA‑‑ATAGCTCATCTTTGCTATCTTATTTAACACCAAATTTTATGGTTGCTTTTTTGTCTTTTCTCTATTCTGTTGCTAATGTCCTTGTCACATTGACATCAATTATATTAACATTATTCCTAGTTTTTGTCAACAATATTTTTTTATTTTTTTTCAATTTTTTTATTTTTTTTCTTACCATTTATTTTTACTTTTATTTTCAACAAAAAAATCTGACCTTAACAGCCAGATTTTCTTATATAATTAACTTATTAT > CP028101/336714‑337049 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |