New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP028101	= 574164	524 (1.100)	8 (0.020)	8/276	22.6	1.6%	intergenic (‑67/+64)	C7Y58_02915/C7Y58_02920	sodium‑dependent transporter/tyrosine phenol‑lyase
	?	CP028101	= 574169	493 (1.120)					intergenic (‑72/+59)	C7Y58_02915/C7Y58_02920	sodium‑dependent transporter/tyrosine phenol‑lyase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAACAGCAGATCCAACACAAGTTAAAATGAAACCTATTTTTGACTGAAACTTCCTTTCCGAATTGTCCATATAAGCCTCCTAAAATTTTAATACCAAAGTCCATTTTTCATAATATAATTTTTAAAAAAAGGAGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP028101/574028‑574164 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggagaggGCTAACCTCTCCTTTTTTTAAAAATTATATTATGAAAAATGGACTTTGGTATTAAAATTTTAGGAGGCTTATATGGACAATTCGGAAAGGAAGTTTCAGTCAAAAATAGGTTTCATTTTAACTTGTGTTGGAT  <  CP028101/574169‑574037                                                                                                                                                                                                                                                                                CAACAGCAGATCCAACACAAGTTAAAATGAAACCTATTTTTGACTGAAACTTCCTTTCCGAATTGTCCATATAAGCCTCCTAAAATTTTAATACCAAAGTCCATTTTTCATAATATAATTTTTAAAAAAAAGAGAGGGCTAACCTCTCCT                                                                                                                          >  2:298804/1‑150             CAACACAAGTTAAAATGAAACCTATTTTTGACTGAAACTTCCTTTCCGAATTGTCCATATAAGCCTCCTAAAATTTTAATACCAAAGTCCATTTTTCATAATATAATTTTTAAAAAAAGGAGAGGGCTAACCTCTCCTTTTTTTAAAAAT                                                                                                              <  1:1504493/150‑1                CACAAGTTAAAATGAAACCTATTTTTGACTGAAACTTCCTTTCCGAATTGTCCATATAAGCCTCCTAAAATTTTAATACCAAAGTCCATTTTTCATAATATAATTTTTAAAAAAAGGAGAGGGCTAACCTCTCCTTTTTTTAAAAATTAT                                                                                                           <  2:612236/150‑1                                                        TTCCGAATTGTCCATATAAGCCTCCTAAAATTTTAATACCAAAGTCCATTTTTCATAATATAATTTTTAAAAAAAGGAGAGGGCTAACCTCTCCTTTTTTTAAAAATTATATTATGAAAAATGGACTTTGGTATTAAAATTTTAGGAGGC                                                                   <  2:176083/150‑1                                                           CGAAGTGTCCATATAAGCCTCCCAAAAGTTTAATACCAAAGTCCATTTTTCATGACATAATTTTTAAAAAAAGGAGAGGGCGAACCTCTCCTTTTTTTAAAAATTATATTATGAAAAATGGACTTTGGTATTAAAATTTTAGGAGGCTTA                                                                <  1:2820499/150‑1                                                                  tccgTATAAGCCTCCTAAAATTTTAATACCAACGTCCATTTTTCATAATAGAATTTTTAAAAAAAGGGGAGGGCTAACCTCTCCTTTTTTTAAAAATTATATTATGAAAAATGGACTTTGGTATTAAAATTTTAGGAGGCTTATATGGAC                                                         <  2:739496/146‑1                                                                                            TACCAAGGTCCATTTTTCATAATATAATTTTTAAAAAAAGGAGAGGGCTAACCTCTCTTTTTTTTAAAAATTATATTATGAAAAATGGACTTTGGTATTAAAATTTTAGGAGGCTTATATGGACAATTCGGAAAGGAAGTTTCAGTCAAA                               <  1:298804/150‑1                                                                                                                         ttgAAAAAAAGGAGAGGGCTAACCTCTCCTTTTTTTAAAAATTATATTATGAAAAATGGACTTTGGTATTAAAATTTTAGGAGGCTTATATGGACAATTCGGAAAGGAAGTTTCAGTCAAAAATAGGTTTCATTTTAACTTGTGTTGGAT  <  1:153293/147‑1                                                                                                                                                                                                                                                                                CAACAGCAGATCCAACACAAGTTAAAATGAAACCTATTTTTGACTGAAACTTCCTTTCCGAATTGTCCATATAAGCCTCCTAAAATTTTAATACCAAAGTCCATTTTTCATAATATAATTTTTAAAAAAAGGAGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP028101/574028‑574164 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggagaggGCTAACCTCTCCTTTTTTTAAAAATTATATTATGAAAAATGGACTTTGGTATTAAAATTTTAGGAGGCTTATATGGACAATTCGGAAAGGAAGTTTCAGTCAAAAATAGGTTTCATTTTAACTTGTGTTGGAT  <  CP028101/574169‑574037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.