New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP028101	1133411 =	409 (0.860)	11 (0.030)	10/266	21.0	2.9%	coding (1116/1119 nt)	C7Y58_05455	M23 family peptidase
	?	CP028101	1133444 =	371 (0.870)					intergenic (+30/‑16)	C7Y58_05455/C7Y58_05460	M23 family peptidase/4‑hydroxy‑3‑methylbut‑2‑en‑1‑yl diphosphate synthase (flavodoxin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGTTTGTATTAGTCATAGATTGGATAATTATCGGATTATTCCCACCTATTTTTAAATTTGCAACTTTTACAACTCTTGTATTTCTTTCCATTTCATCTCCTTAACATATAAATAAAAAGGACAATGTCCTTTTTATTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP028101/1133550‑1133411 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcctttttatttatATGTTAAGGAGATGAAATGGAAAGAAATACAAGAGTTGTAAAAGTTGCAAATTTAAAAATAGGTGGGAATAATCCGATAATTATCCAATCTATGACTAATACAAACTCAGCTGATGTAGA  >  CP028101/1133444‑1133563                                                                                                                                                                                                                                                                      AGTTTGTATTAGTCATAGATTGGATAATTATCGGATTATTCCCACCTATTTTTAAATTTGCAACTTTTACAACTCCTGTATTTCTTTCCATTTCATCTCCTTAACATATAAATAAAAAGGACAATGTCCTTTTTGTTTCTATGTTAAGGA                                                                                                                >  1:606413/1‑150        ATTAGTCATAGATTGGATAATTATCGGATTATTCCCACCTATTTTTAAATTTGCAACTTTTACAACTCTTGTATTTCTTTCCATTTCATCTCCTTAACATATAAATAAAAAGGACAATGTCCTTTTTATTTCTATGTTAAGGAGATGAAA                                                                                                         >  2:1208168/1‑150                       GATAATTATCGGATTATTCCCACCTATTTTTAAATTTGCAACTTTTACAACTCTTGTATTTCTTTCCATTTCATCTCCTTAACATATAAATAAAAAGGACAATGTCCTTTTTATTTATATGTTAAGGAGATGAAATGGAAAGAAATACAA                                                                                          >  1:890335/1‑150                                                  TTTTAAATTTGCAACTTTTACAACTCTTGTATTTCTTTCCATTTCATCTCCTTAACATATAAATAAAAAGGACAATGTCCTTTTTATTTATATGTTAAGGAGATGAAATGGAAAGACATACAAGAGTTGTAAAAGTTGCAAATTTAAAAA                                                               >  1:1124223/1‑150                                                  TTTTAAATTTGCAACTTTTACAACTCTTGTATTTCTTTCCATTTCATCTCCTTAACATATAAATAAAAAGGACAATGTCCTTTTTATTTATATGTTAAGGAGATGAAATGGAAAGAAATACAAGAGTTGTAAAAGTTGCAAATTTAAAAA                                                               >  1:1865258/1‑150                                                        ATTTGCAACTTTTACAACTCTTGTATTTCTTTCCATTTCATCTCCTTAACATATAAATAAAAAGGACAATGTCCTTTTTATTTATATGTTAAGGAGATGAAATGGAAAGAAATACAAGAGTTGTAAAAGTTGCAAATTTAAAAATAGGTG                                                         >  1:78681/1‑150                                                           TGCAACTTTTCCAACTCTTGTATTTCTTTCCATTTCATCTCATTAACATATAAAGAAAAAGGACAAGGTCCTTTTTATTTATATGTTAAGGAGATGAAAGGGAAAGAAATACAAGAGCTGTAAAAATTGCAAATTTCAAAATAagcggga                                                      >  2:1892358/1‑143                                                                                                   CCTTAACATATAAATAAAAAGGACAATGTCCTTTTTATTTATATGTTAAGGAGATGAAATGGAAAGAAATACAAGAGTTGTAAAAGTTGCAAATTTAAAAATAGGTGGGAATAATCCGATAATTATCCAATCTATGACTAATACAAACTC              >  2:692479/1‑150                                                                                                             TAAATAAAAAGGACAATGTCCTTTTTATTTATATGTTAAGGAGATGAAATGGAAAGAAATACAAGAGTTGTAAAAGTTGCAAATTTAAAAATAGGTGGGAATAATCCGATAATTATCCAATCTATGACTAATACAAACTCAGCTGATGTA    >  2:2497894/1‑150                                                                                                              AAATAAAAAGGACAATGTCCTTTTTATTTATATGTTAAGGAGATGAAATGGAAAGAAATACAAGAGTTGTAAAAGTTGCAAATTTAAAAATAGGTGGGAATAATCCGATAATTATCCAATCTATGACTAATACAAACTCAGCTGATGTAG   >  1:1691369/1‑150                                                                                                               AATAAAAAGGACAATGTCCTTTTTATTTATATGTTAAGGAGATGAAATGGAAAGAAATACAAGAGTTGTAAAAGTTGCAAATTTAAAAATAGGTGGGAATAATCCGATAATTATCCAATCTATGACTAATACAAATTCAGCTGATGTAGA  >  1:3088628/1‑150                                                                                                                                                                                                                                                                      AGTTTGTATTAGTCATAGATTGGATAATTATCGGATTATTCCCACCTATTTTTAAATTTGCAACTTTTACAACTCTTGTATTTCTTTCCATTTCATCTCCTTAACATATAAATAAAAAGGACAATGTCCTTTTTATTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP028101/1133550‑1133411 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcctttttatttatATGTTAAGGAGATGAAATGGAAAGAAATACAAGAGTTGTAAAAGTTGCAAATTTAAAAATAGGTGGGAATAATCCGATAATTATCCAATCTATGACTAATACAAACTCAGCTGATGTAGA  >  CP028101/1133444‑1133563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.