| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP028101 | 788832 = | 381 (0.800) | 14 (0.030) | 9/278 | 22.1 | 3.8% | intergenic (+172/‑73) | C7Y58_03870/C7Y58_03875 | hypothetical protein/RNA‑directed DNA polymerase |
| ? | CP028101 | 788856 = | 358 (0.810) | intergenic (+196/‑49) | C7Y58_03870/C7Y58_03875 | hypothetical protein/RNA‑directed DNA polymerase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTTTTTGCTGTAGTTATAAATTGTTCTCTATATTCAATCCATTCCAAAAAATATCACTCCTTTATCCTCCTTGAGATTATTACATAATAATATCTGGTCATTTCTCAGAAGAGAAATGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP028101/788952‑788832‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagaaatgacCAGATATTATTATGTAATAATCTCAAGGAGGATAAAGGAGTGATATTTTTTGGAATGGATTGAATATAGAGAACAATTTATAACTACAGCAAAAAAAGCTAGTAAAAATAGTGGTTATATAAAGAAAAA > CP028101/788856‑788984 TTTTTTTGCTGTAGTTATAAATTGTTCTCTATATTCAATCCATTCCAAAAAATATCACTCCTTTATCCTCCTTGAGATTATTACCTAATAATATCTGGTCATTTCTCAGAAGAGAAATGACCAGATATTATTATGTAATAATCTCAAGGA > 2:18857/1‑150TTTTTTTGCTGTAGTTATAAATTGTTCTCTATATTCAATCCATTCCAAAAAATATCACTCCTTTATCCTCCTTGAGATTATTACATAATAATATCTGGTCATTTCTCAGAAGAGAAATGACCAGATATTATTATGTAATAATCTCAAGGA > 2:1701632/1‑150 CTGTAGTTATAAATTGTTCTCTATATTCAATCCATTCCAAAAAATATCACTCCTTTATCCTCCTTGAGATTATTGCATAATAATATCTGGTCATTTCTCAGAAGAGAAATGACCAGATATTATTATGTAATAATCTCAAGGAGGATAAAG > 1:1331580/1‑150 CTGTAGTTATAAATTGTTCTCTATATTCAATCCATTCCAAAAAATATCACTCCTTTATCCTCCTTGAGAGTATTACATAATAATATCTGGTCACTTCTCAGAAGAGAAACGACCAAATATTATTACTTCATAATCTCAAaaagaataaag > 1:961955/1‑139 ATTCAATCCATTCCAAAAAATATCACTCCTTTATCCTCCTTGAGATTATTACATAATAATATCTGGTCATTTCTCAGAAGAGAAATGACCAGATATTATTATGTAATAATCTCAAGGAGGATAAAGGAGTGATATTTTTTGGAATGGATT > 1:418675/1‑150 CAAAAAATATCACTCCTTTATCCTCCTTGAGATTATTACATAATAATATCTGGTCATTTCTCAGAAGAGAAATGACCAGATATTATTATGTAATAATCTCAAGGAGGATAAAGGAGTGATATTTTTTGGAATGGATTGAATATAGAGAAC > 2:2009293/1‑150 TAATATCTGGTCATTTCTAAGAAGAGAAATGACCAGATATTATTATGTAATAATCTAAAGGAGGATAAAGGAGTGATATTTTTTGGAATGGATTGAATATAGAGAACAATTTATAACTACAGCAAAAAAAGATAGTAAAAATAGTGGTTA > 1:3226434/1‑150 ATCTGGTCATTTCTCAGAAGAGAAATGACCAGATATTATTATGTAATAATCTCAAGGAGGATAAAGGAGTGATATTTTTTGGAATGGATTGAATATAGAGAACAATTTATAACTACAGCAAAAAAAGCTAGTAAAAATAGTGGTTATATA > 1:3231396/1‑150 ATCTGGTCATTTCTCAGAAGAGAAATGACCAGATATTATTATGTAATAATCTCAAGGAGGATAAAGGAGTGATATTTTTTGGAATGGATTGAATATAGAGAACAATTTATAACTACAGCAAAAAAAGCTAGTAAAAATAGTGGTTATATA > 1:3231397/1‑150 ATCTGGTCATTTCTCAGAAGAGAAATGACCAGATATTATTATGTAATAATCTCAAGGAGGATAAAGGAGTGATATTTTTTGGAATGGATTGAATATAGAGAACAATTTATAACTACAGCAAAAAAAGCTAGTAAAAATAGTGGTTATATA > 1:3231400/1‑150 TGGTCATTTCTCAGAAGAGAAATGACCAGATATTATTATGTAATAATCTCAAGGAGGATAAAGGAGTGATATTTTTTGGAATGGATTGAATATAGAGAACAATTTATAACTACAGCAAAAAAAGCTAGTAAAAATAGTGGTTATATAAAG > 2:956871/1‑150 GGTCATTTCTCAGAAGAGAAATGACCAGATATTATTATGTAATAATCTCAAGGAGGATAAAGGAGTGATATTTTTTGGAATGGATTGAATATAGAGAACAATTTATAACTACAGCAAAAAAAGCTAGTAAAAATAGTGGTTATATAAAGA > 2:3378307/1‑150 cTTTCTCAGAAGAGAAATGACCAGATATTATTATGTAATAATCTCAAGGAGGATAAAGGAGTGATATTTTTTGGAATGGATTGAATATAGAGAACAATTTATAACTACAGCAAAAAAAGCTAGTAAAAATAGTGGTTATATAAAGAAAAA < 2:961955/149‑1 ATTTCTCAGAAGAAAAATGACCAGATATTATTATGTAATAATCTCAAGGAGGATAAAGGAGTGATATTTTTTGGAATGGATTGAATATAGAGAACAATTTATAACTACAGCAAAAAAAGCTAGTAAAAATAGTGGTTATATAAAGAAAAA < 2:1331580/150‑1 TTTTTTTGCTGTAGTTATAAATTGTTCTCTATATTCAATCCATTCCAAAAAATATCACTCCTTTATCCTCCTTGAGATTATTACATAATAATATCTGGTCATTTCTCAGAAGAGAAATGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP028101/788952‑788832‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagaaatgacCAGATATTATTATGTAATAATCTCAAGGAGGATAAAGGAGTGATATTTTTTGGAATGGATTGAATATAGAGAACAATTTATAACTACAGCAAAAAAAGCTAGTAAAAATAGTGGTTATATAAAGAAAAA > CP028101/788856‑788984 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |