| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP028101 | 677260 = | 419 (0.880) | 10 (0.030) | 7/242 | 21.8 | 2.8% | intergenic (+43/+35) | C7Y58_03345/C7Y58_03350 | Crp/Fnr family transcriptional regulator/PTS transporter subunit IIC |
| ? | CP028101 | 677288 = | 342 (0.890) | intergenic (+71/+7) | C7Y58_03345/C7Y58_03350 | Crp/Fnr family transcriptional regulator/PTS transporter subunit IIC | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACTATGATAATTTTACATTTCTTATTACCAGCAATCTTAACTTTTATTATTTATAAAGTATTAAAGAAAAAAGGATATATAAAAGCAGGAGATTTAAAAATATAAGACAAACAAAAATGGAGTTTTAAAACTCCATTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP028101/677400‑677260‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaatggagttttaaaactccatttttGTTTGTCTTATATTTTTAAATCTCCTGCTTTTATATATCCTTTTTTCTTTAATACTTTATAAATAATAAAAGTTAAGATTGCTGGTAATAAGAAATGTAAAA > CP028101/677288‑677389 AACTATGATAATTTTACATTTCTTATTACCAGCAATCTTAACTTTTATTATTTATAAAGTATTAAAGAAAAAAGGATATATAAAAGCAGGAGATTTAAAAATATAAGACAAACAAAAATGGAGTTTTAAAACTCCATTTTTGTTTGTCTT < 1:1434662/150‑1AACTATGATAATTTTACATTTCTTATTACCAGCAATCTTAACTTTTATTATTTATAAAGTATTAAAGAAAAAAGGATATATAAAAGCAGGAGATTTAAAAATATAAGACAAACAAAAATGGAGTTTTAAAACTCCATTTTTGTTTGTCTT < 1:496615/150‑1 TTTTACATTTCTTATTACCAGCAATCTTAACTTTTATTATTTATAAAGTATTAAAGAAAAAAGGATATATAAAAGCAGGAGATTTAAAAATATAAGACAAACAAAAATGGAGTTTTAAAACTCCATTTTTGTTTGTCTTATATTTTTAAA < 1:1095219/150‑1 ATTACCAGCAATCTTAACTTTTATTATTTATAAAGTATTAAAGAAAAAAGGATATATAAAAGCAGGAGATTTAAAAATATAAGACAAACAAAAATGGAGTTTTAAAACTCCATTTTTGTTTGTCTTATATTTTTAAATCTCCTGCTTTTA > 2:224927/1‑150 ATAAAGTATTAAAGAAAAAAGGATATATAAAAGCAGGAGATTTAAAAATATAAGACAAACAAAAATGGAGTTTTAAAACTCCATTTTTGTTTGTCTTATATTTTTAAATCTCCTGCTTTTATATATCCTTTTTTCTTTAATACTTTATAA < 1:2252641/150‑1 AAAGAAAAAAGGATATATAAAAGCAGGAGATTTAAAAATATAAGACAAACAAAAATGGAGTTTTAAAACTCCATTTTTGTTTGTCTTATATTTTTAAATCTCCTGCTTTTATATATCCTTTTTTCTTTAATACTTTATAAATAATAAAAG < 1:856156/150‑1 GATATATAAAAGCAGGAGATTTAAAAATATAAGACAAACAAAAATGGAGTTTTAAAACTCCATTTTTGTTTGTCTTATATTTTTACATCTCCTGCTTTTATATATCCTTTTTTCTTTAATACTTTATAAATAATAAAAGTTAAGATTGCT > 1:870804/1‑150 GATATATAAAAGCAGGAGATTTAAAAATATAAGACAAACAAAAATGGAGTTTTAAAACTCCATTTTTGTTTGTCTTATATTTTTAAATCTCCTGCTTTTATATATCCTTTTTTCTTTAATACTTTATAAATAATAAAAGTTAAGATTGCT > 1:2851829/1‑150 GATATATAAAAGCAGGAGATTTAAAAATATAAGACAAACAAAAATGGAGTTTTAAAACTCCATTTTTGTTTGTCTTATATTTTTAAATCTCCTGCTTTTATATATCCTTTTTTCTTTAATACTTTATAAATAATAAAAGTTAAGATTGCT > 2:1159215/1‑150 TTTAAAAATATAAGACAAACAAAAATGGAGTTTTAAAACTCCATTTTTGTTTGTCTTATATTTTTAAATCTCCTGCTTTTATATATCCTTTTTTCTTTAATACTTTATAAATAATAAAAGTTAAGATTGCTGGTAATAAGAAATGTAAAA > 1:1095221/1‑150 AACTATGATAATTTTACATTTCTTATTACCAGCAATCTTAACTTTTATTATTTATAAAGTATTAAAGAAAAAAGGATATATAAAAGCAGGAGATTTAAAAATATAAGACAAACAAAAATGGAGTTTTAAAACTCCATTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP028101/677400‑677260‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaatggagttttaaaactccatttttGTTTGTCTTATATTTTTAAATCTCCTGCTTTTATATATCCTTTTTTCTTTAATACTTTATAAATAATAAAAGTTAAGATTGCTGGTAATAAGAAATGTAAAA > CP028101/677288‑677389 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |