New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_143	808 =	1165 (1.470)	46 (0.110) +AC	29/292	1.9	3.8%	intergenic (‑502/–)	Xen14_04759/–	hypothetical protein/–
	?	Xen14_94	= 75	NA (NA)					intergenic (–/‑39)	–/Xen14_04554	–/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTACGTAATTTTCTGATTTGCAGATTGCT  >  Xen14_94/1‑223                                                                                          |                                                                                                                                                     ccataagctctcctgaaTCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTa                                                                                          <  1:3083806/135‑1 (MQ=18)  cataagctctcctgaaTCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGCGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAATCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTac                                                                                         <  1:3794753/136‑1 (MQ=18)       gctctcctgaaTCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCTTTGGGTGTGGATCCCTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCa                                                                                    >  1:1347731/10‑150 (MQ=21)        ctctcctgaaTCAGGAGAACAGATTACCCCCTGGATCTGATTTCATGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAg                                                                                   <  1:4034345/142‑1 (MQ=25)          ctcctgaaTCAGGAGAGCAGATTACCCCATGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGtt                                                                                 >  1:37842/7‑150 (MQ=255)            cctgaaTCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCa                                                                               <  1:4081407/146‑1 (MQ=255)            cctgaaTCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCa                                                                               >  1:1378243/5‑150 (MQ=255)            cctgaaTCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCa                                                                               >  1:1380030/5‑150 (MQ=255)               gaaTCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAAtt                                                                            >  1:2716367/2‑150 (MQ=255)                aaTCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACAccc                                                                                     >  1:2971737/1‑140 (MQ=255)                 aTCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTc                                                                          <  1:3282742/150‑1 (MQ=255)                  tCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCa                                                                         >  1:2164490/1‑150 (MQ=255)                  tCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCa                                                                         >  1:3736684/1‑150 (MQ=255)                      gagaGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGa                                                                     >  1:638178/1‑150 (MQ=255)                        gagCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGaaa                                                                   >  1:2128545/1‑150 (MQ=255)                           cAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAAc                                                                >  1:4169568/1‑150 (MQ=255)                                tACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACt                                                           >  1:483292/1‑150 (MQ=255)                                tACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACt                                                           >  1:2621922/1‑150 (MQ=255)                                tACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACt                                                           >  1:483293/1‑150 (MQ=255)                                 aCCCCCTGTATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACtt                                                          <  1:2241857/150‑1 (MQ=255)                                  cccccTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTa                                                         >  1:1807374/1‑150 (MQ=255)                                           tCTGATTTCCGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGCCTGCTGAGATGGTCATGGCTTTTTCCCAAATCATCACACCCCGTTCAATTCCAAAGAAAAACCCACTTAATCCCTTcc                                                >  1:4019947/1‑150 (MQ=38)                                           tCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTcc                                                >  1:2404846/1‑150 (MQ=255)                                               aTTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGc                                            >  1:63138/1‑150 (MQ=255)                                               aTTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGc                                            <  1:1144616/150‑1 (MQ=255)                                               aTTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGc                                            <  1:1144618/150‑1 (MQ=255)                                                 ttCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTg                                          <  1:2329690/150‑1 (MQ=255)                                                  tCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTgg                                         >  1:2811338/1‑150 (MQ=255)                                                   cAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGt                                        >  1:2359361/1‑150 (MQ=255)                                                   cAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGt                                        >  1:2359354/1‑150 (MQ=255)                                                           gggTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCa                                <  1:530221/150‑1 (MQ=255)                                                            ggTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAg                               <  1:1120227/150‑1 (MQ=255)                                                            ggTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCACCGCTGGTGAAATCCAg                               <  1:732958/150‑1 (MQ=255)                                                             gtgtGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTGCACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGc                              <  1:1653256/150‑1 (MQ=255)                                                             gtgtGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTGCACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGc                              <  1:1313771/150‑1 (MQ=255)                                                             gtgtGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTgg                                         >  1:1840921/1‑139 (MQ=255)                                                              tgtgGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCt                             >  1:2060975/1‑150 (MQ=255)                                                                tgGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTAc                           >  1:3051635/1‑150 (MQ=255)                                                                tgGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTAc                           >  1:1163701/1‑150 (MQ=255)                                                                     cACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTACGTAAt                      >  1:3681566/1‑150 (MQ=255)                                                                       cTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTACGTAAttt                    >  1:3994159/1‑150 (MQ=255)                                                                          ttGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTACGTAATTTTCt                 <  1:3450133/150‑1 (MQ=255)                                                                                 gTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTACGTAATTTTCTGATTTGc          >  1:1063269/1‑150 (MQ=255)                                                                                 gTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTACGTAATTTTCTGATTTGc          >  1:3964173/1‑150 (MQ=255)                                                                                 gTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTACGTAATTTTCTGATTTGc          >  1:1063268/1‑150 (MQ=255)                                                                                    cGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTACGTAATTTTCTGATTTGCAGa       >  1:1422735/1‑150 (MQ=255)                                                                                         cacCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTACGTAATTTTCTGATTTGc          >  1:1758671/1‑142 (MQ=255)                                                                                         cacCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTACGTAATTTTCTGATTTGCAGATTGCt  >  1:3636275/1‑150 (MQ=255)                                                                                         cacCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTACGTAATTTTCTGATTTGCAGATTGCt  >  1:3111485/1‑150 (MQ=255)                                                                                         cacCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTACGTAATTTTCTGATTTGCAGATTGCt  >  1:2720242/1‑150 (MQ=255)                                                                                          |                                                                                                                                                     ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACACCCATAAGCGCTTTCGAAGTCTGACTGCTGAGATGGTCATGGCTTTTTACCAAATCATTACACCCAGTTCAATTTCAAAGAAAAACCCACTTAATCCCTTCCCCGCTGGTGAAATCCAGCTACGTAATTTTCTGATTTGCAGATTGCT  >  Xen14_94/1‑223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.