New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_117	= 3027	108 (1.210)	4 (0.060) +CCGGAGCCGGACTCCGGTTT	3/256	1.8	5.1%	intergenic (‑290/–)	Xen14_04703/–	hypothetical protein/–
	?	Xen14_194	= 327	64 (0.880)					intergenic (+18/–)	Xen14_04786/–	hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

GTGATAGCATACATTTCAACCTTCAAAATGAATCAATCTTTACTTTCTTAACAAACATCACCATGACATGACAACAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_117/2948‑3027 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTGTGAAGCTGTCGGGTTACTTCATCCCGCCAATATTTTCCCACGTCCCGTCAGCACGCAGAATT  <  Xen14_194/327‑261                                                                                 ||||||||||||||||||||                                                                    GTGATAGCATACATTTCAACCTTCAAAATGAATCAATCTTTACTTTCTTAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGG‑CTATTTCATCCCGCCAATATTTTCCCACGTCCC                  <  1:797326/150‑1 GTGATAGCATACATTTCAACCTTCAAAATGAATCAATCTTTACTTTCTTAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGG‑CTATTTCATCCCGCCAATATTTTCCCACGTCCC                  <  1:797327/150‑1             ATTTCAACCTTCAAAATGAATCAATCTTTACTTTCTTAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCCGTCGG‑CTATTTCATCCCGCCAATATTTTCCCACGTCCCGTCAGCACGCAG      <  1:3994510/150‑1                 CAACCTTCAAAATGAATCAATCTTTACTTTCTTAACAAACATCACCATGGCATGACAACAAAAACCGGAGCCGGACTCCGGTTTTTTTGTGAACCAGTCGG‑CTATTTCATCCCGCCAATATTTTCCCACGTCCCGTCAGCATGCAGGATT  >  1:3506296/1‑150                                                                                 ||||||||||||||||||||                                                                    GTGATAGCATACATTTCAACCTTCAAAATGAATCAATCTTTACTTTCTTAACAAACATCACCATGACATGACAACAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_117/2948‑3027 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTGTGAAGCTGTCGGGTTACTTCATCCCGCCAATATTTTCCCACGTCCCGTCAGCACGCAGAATT  <  Xen14_194/327‑261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.