New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_118	3306 =	NA (NA)	49 (0.600)	22/274	1.9	4.7%	intergenic (+47/–)	agp/–	Glucose‑1‑phosphatase/–
	?	Xen14_20	75235 =	1076 (10.300)					coding (465/735 nt)	Xen14_02292	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

TGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCA‑‑‑‑‑‑‑‑  >  Xen14_118/3157‑3355                                                                                                                                                      |                                                          tGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCa                                                           <  1:3390197/150‑1 (MQ=255) tGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCa                                                           <  1:3390195/150‑1 (MQ=255) tGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCa                                                           <  1:3390194/150‑1 (MQ=255)   cgcAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCAcc                                                         >  1:467087/1‑150 (MQ=255)   cgcAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCAcc                                                         <  1:1646912/150‑1 (MQ=255)   cgcAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCAcc                                                         >  1:467083/1‑150 (MQ=255)   cgcAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCAcc                                                         >  1:467082/1‑150 (MQ=255)   cgcAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCAcc                                                         >  1:2574264/1‑150 (MQ=255)       gcgcGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCggg                                                     <  1:1064151/150‑1 (MQ=255)       gcgcGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCggg                                                     <  1:1064152/150‑1 (MQ=255)       gcgcGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCggg                                                     <  1:1064148/150‑1 (MQ=255)                gCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATCCACAACCCCCCAACCGGGGATTTGTGa                                            >  1:1283513/1‑150 (MQ=255)                gCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGa                                            <  1:3282383/150‑1 (MQ=255)                  tGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGAtg                                          <  1:2659321/150‑1 (MQ=255)                     aaTTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGAtgtct                                       >  1:2825780/1‑150 (MQ=255)                      aTTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGAtgtctg                                      >  1:2400819/1‑150 (MQ=255)                            cGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCATGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTc                                >  1:300127/1‑150 (MQ=255)                                   ccGATAGATGCCACCGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTa                         >  1:4141700/1‑150 (MQ=255)                                   ccGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTa                         >  1:2950379/1‑150 (MQ=255)                                        aGATGCCAATGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAggggg                    <  1:414469/150‑1 (MQ=255)                                          aTGCCAACAGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGAc                  <  1:3779763/150‑1 (MQ=255)                                            gCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATATACAAATCCCCACCCTGGGATTTGTGAt                                           <  1:3471736/123‑1 (MQ=255)                                             ccAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGActct               >  1:836505/1‑150 (MQ=255)                                                   gTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCat         >  1:453720/1‑149 (MQ=255)                                                     ttttGCCCAAGGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGGTTTGTGAtgtctg                                      <  1:3189586/119‑1 (MQ=255)                                                      tttGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGa                   >  1:1703267/1‑137 (MQ=255)                                                      tttGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCatccg      >  1:1640255/1‑146 (MQ=255)                                                          cccAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCatccggtag  <  1:88271/150‑9 (MQ=255)                                                          cccAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCatccggtag  <  1:88272/150‑9 (MQ=255)                                                                                                                                                      |                                                          TGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCA‑‑‑‑‑‑‑‑  >  Xen14_118/3157‑3355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.