New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_20	75208 =	97 (1.070)	123 (0.980)	31/296	1.8	55.9%	coding (438/735 nt)	Xen14_02292	hypothetical protein
	?	Xen14_54	= 41	NA (NA)					intergenic (–/‑50)	–/hokA	–/Protein HokA

AGATGCTGCATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCATA  >  Xen14_54/1‑187                                         |                                                                                                                                                   aGATGCTGCATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTc                                       <  1:116308/150‑1 (MQ=255) aGATGCTGCATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTc                                       <  1:116311/150‑1 (MQ=255) aGATGCTGCATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTc                                       <  1:3460455/150‑1 (MQ=255) aGATGCTGCATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTCTATTTTTc                                       <  1:3494/150‑1 (MQ=255)  gATGCTGCATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCa                                      <  1:1200760/150‑1 (MQ=255)  gATGCTGCATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCa                                      <  1:1200763/150‑1 (MQ=255)     gctgcATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCt                                   >  1:516971/1‑150 (MQ=255)      ctgcATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTg                                  <  1:767692/150‑1 (MQ=255)       tgcATTTGCATAGTTCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTgg                                 <  1:831698/150‑1 (MQ=255)        gcATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGga                                <  1:2394746/150‑1 (MQ=255)        gcATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGga                                <  1:2394745/150‑1 (MQ=255)        gcATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGga                                <  1:2394752/150‑1 (MQ=255)        gcATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGga                                <  1:2394757/150‑1 (MQ=255)         cATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGgat                               <  1:79294/150‑1 (MQ=255)          aTTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCttt                                               >  1:3719000/1‑133 (MQ=255)          aTTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGgatg                              >  1:3733451/1‑150 (MQ=255)           tttGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGgatga                             >  1:3540060/1‑150 (MQ=255)           tttGCATAGTGCAATCCCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAGTATAGATTACTTTCTTTACTAGTGATCTTCTTCACGCTTTTATTTTTCCCCTGaatga                             >  1:3780572/1‑150 (MQ=21)             tGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATa                           >  1:3188918/1‑150 (MQ=255)             tGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATa                           <  1:1152036/150‑1 (MQ=255)             tGCATAGTGCAATCTCCCCTTACTTATCAGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATa                           <  1:2288500/150‑1 (MQ=255)                aTAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGAGTTGTTTCACGCATTTATTTTTCACCTGGATGATAaga                        <  1:3763774/150‑1 (MQ=255)                 tAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAagag                       >  1:1140413/1‑150 (MQ=255)                   gTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGAt                     >  1:2438707/1‑150 (MQ=255)                   gTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGAt                     <  1:1192587/150‑1 (MQ=255)                   gTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGAt                     <  1:924906/150‑1 (MQ=255)                   gTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTCTCACCTGGATGATAAGAGAt                     >  1:1253344/1‑150 (MQ=255)                    tGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGAtt                    <  1:726224/150‑1 (MQ=255)                    tGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGAtt                    <  1:726223/150‑1 (MQ=255)                     gCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTc                   <  1:1439738/150‑1 (MQ=255)                     gCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTc                   <  1:1439737/150‑1 (MQ=255)                     gCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTc                   >  1:1997226/1‑150 (MQ=255)                        aTCTCCCTTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACt                <  1:3746147/150‑1 (MQ=255)                        aTCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACt                <  1:3321653/150‑1 (MQ=255)                        aTCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACt                <  1:3415191/150‑1 (MQ=255)                        aTCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACt                <  1:1422824/150‑1 (MQ=255)                        aTCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACt                <  1:2601477/150‑1 (MQ=255)                        aTCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACCTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACt                <  1:1422823/150‑1 (MQ=255)                            ccccTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAag                         <  1:2297073/137‑1 (MQ=255)                            ccccTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAag                         <  1:2297070/137‑1 (MQ=255)                            ccccTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAag                         <  1:2297071/137‑1 (MQ=255)                            ccccTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAag                         <  1:2297072/137‑1 (MQ=255)                              ccTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGa          >  1:3103792/1‑150 (MQ=255)                                 tacttaTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAAtt       <  1:322984/150‑1 (MQ=255)                                  acttaTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTg      <  1:744370/150‑1 (MQ=255)                                  acttaTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTg      <  1:744367/150‑1 (MQ=255)                                    ttaTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCa    <  1:963483/150‑1 (MQ=255)                                    ttaTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCa    <  1:549035/150‑1 (MQ=255)                                    gtaTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTAGTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCa    <  1:151953/149‑1 (MQ=255)                                     taTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCat   <  1:3139452/150‑1 (MQ=255)                                     taTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCat   >  1:2062432/1‑150 (MQ=255)                                     taTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCat   <  1:937948/150‑1 (MQ=255)                                     taTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCat   <  1:1000801/150‑1 (MQ=255)                                      aTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAAtt       <  1:3243207/145‑1 (MQ=255)                                      aTCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCata  <  1:432410/150‑1 (MQ=255)                                         cGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACtgtgtg           >  1:899182/1‑138 (MQ=255)                                         |                                                                                                                                                   AGATGCTGCATTTGCATAGTGCAATCTCCCCTTACTTATCCGGAGGCAATTGCAATATCTCTGTGAACTTACACACACAGGGGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCATA  >  Xen14_54/1‑187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.