New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_172	1 =	0 (0.000)	20 (0.370)	13/294	1.5	36.4%	intergenic (–/+60)	–/Xen14_04777	–/hypothetical protein
	?	Xen14_64	= 2419	70 (1.090)					coding (62/699 nt)	Xen14_04183	hypothetical protein

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCATACTGACCCGCGACGACCATTTTGCGCAGGTCACCTTTA  >  Xen14_172/1‑146                                                           |                                                                                                                                                  ttacagaaaaaataacgttctccaccgacctctgtcaggtcgatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGa                                                        >  1:903532‑M1/59‑150 (MQ=255)   acagaaaaaataacgttctccaccgacctctgtcaggtcgatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAAc                                                      >  1:3684891‑M1/57‑150 (MQ=255)      gaaaaaataacgttctccaccgacctctgtcaggtcgatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAAc                                                      <  1:161812‑M1/94‑1 (MQ=255)      gaaaaaataacgttctccaccgacctctgtcaggtcgatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCa                                                   <  1:1728800‑M1/97‑1 (MQ=255)        aaaaataacgttctccaccgacctctgtcaggtcgatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCGAACTCTGCGCTGAACTCAac                                                 >  1:975391‑M1/52‑150 (MQ=255)        aaaaataacgttctccaccgacctctgtcaggtcgatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAac                                                 <  1:3114718‑M1/99‑1 (MQ=255)                 gttctccaccgacctctgtcaggtcgatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCAt                                        <  1:940956‑M1/108‑1 (MQ=255)                 gttctccaccgacctctgtcaggtcgatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCAt                                        <  1:940955‑M1/108‑1 (MQ=255)                 gttctccaccgacctctgtcaggtcgatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCAt                                        <  1:940954‑M1/108‑1 (MQ=255)                  ttctccaccgacctctgtcaggtcgatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCATa                                       <  1:1837201‑M1/109‑1 (MQ=255)                  ttctccaccgacctctgtcaggtcgatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCATa                                       <  1:1837199‑M1/109‑1 (MQ=255)                  ttctccaccgacctctgtcaggtcgatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCATa                                       <  1:1837198‑M1/109‑1 (MQ=255)                       caccgacctctgtcaggtcgatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCATACTGAc                                  <  1:1709935‑M1/114‑1 (MQ=255)                                      ggtcgatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCATACTGACCCGCGACGACCAttt                   <  1:1396310‑M1/129‑1 (MQ=255)                                          gatttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCAt                                        >  1:3832786‑M1/18‑125 (MQ=255)                                           atttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCATACTGACCCGCGACGACCATTTTgcgc              <  1:1915382‑M1/134‑1 (MQ=255)                                           atttcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTCTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCATACTGACCCGCGACGACCATTTTgcgc              <  1:2526762‑M1/134‑1 (MQ=255)                                              tcccagagcaccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCATACTGACCCGCGACGACCATTTTGCGCAgg           <  1:3774648‑M1/137‑1 (MQ=255)                                                       accaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACGCGCAGCATACTGACCCGCGACGACCATTTTGCGCAGGTCACCTTTa  >  1:3042060‑M1/5‑150 (MQ=255)                                                        ccaCGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCATACTGACCCGCGACGACCATTTTGCGCAgg           <  1:1575670‑M1/137‑1 (MQ=255)                                                           |                                                                                                                                                  ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTGGCCGACTGCTCCGCACGGGTGCATTCATTCAGTGTTTCCTGCCGGATATCCTGCATCAGTTCACCACCTGTTCAAACTCTGCGCTGAACTCAACACGCAGCATACTGACCCGCGACGACCATTTTGCGCAGGTCACCTTTA  >  Xen14_172/1‑146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.