New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_118	3283 =	NA (NA)	35 (0.480)	25/296	1.2	33.0%	intergenic (+24/–)	agp/–	Glucose‑1‑phosphatase/–
	?	Xen14_43	39549 =	71 (0.810)					intergenic (‑13/+372)	yhdJ_2/Xen14_03575	DNA adenine methyltransferase YhdJ/hypothetical protein

GATGCGTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCA‑‑‑‑‑‑‑‑‑  >  Xen14_118/3134‑3355                                                                                                                                                      |                                                                                  gATGCGTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGcc                                                                                   >  1:2615844/1‑150 (MQ=255)        tAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGNGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTctct                                                                            <  1:3638786/150‑1 (MQ=255)           cccTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGCATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTtat                                                                         >  1:1565397/1‑150 (MQ=255)           cccTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTtat                                                                         <  1:1312573/150‑1 (MQ=255)           cccTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTtat                                                                         <  1:1312569/150‑1 (MQ=255)           cccTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTtat                                                                         >  1:3323743/1‑150 (MQ=255)             ttGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATac                                                                       <  1:3290396/149‑1 (MQ=255)               gCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATacac                                                                     <  1:1329143/150‑1 (MQ=255)                    cACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATc                                                                >  1:1916220/1‑150 (MQ=255)                      ccTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATccc                                                              <  1:2505710/150‑1 (MQ=255)                       cTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATcccc                                                             <  1:2190205/150‑1 (MQ=255)                             aGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGACGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTCTTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCgg                                                       >  1:3326518/1‑150 (MQ=255)                             aGCGCGTGACGCCGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCgg                                                       >  1:777531/1‑150 (MQ=255)                                   tGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGAttt                                                 <  1:2378155/150‑1 (MQ=255)                                   tGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGAttt                                                 <  1:3804424/150‑1 (MQ=255)                                   tGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGAttt                                                 >  1:3532796/1‑150 (MQ=255)                                    gACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATccccgggtggggatttg                                                <  1:216676/150‑14 (MQ=255)                                    gACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATccccgggtggggatttg                                                <  1:216670/150‑14 (MQ=255)                                    gACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATccccgggtggggatttg                                                <  1:216671/150‑14 (MQ=255)                                    gACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTtg                                                <  1:3139731/150‑1 (MQ=255)                                       gCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATATACAAATCCCCACCCGGGGATTTGTGa                                             <  1:1388361/150‑1 (MQ=255)                                        cTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGAt                                            >  1:2018837/1‑150 (MQ=255)                                           gAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGAtgtc                                         <  1:1581098/150‑1 (MQ=255)                                               tAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGCtgtctgtc                                     >  1:3566431/1‑150 (MQ=255)                                                            gATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAgg                        <  1:3559823/150‑1 (MQ=255)                                                                     cAACGGTTTTTGCCCAATGGATAAGTCTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTCGGGGGACTCtt               >  1:2262847/1‑150 (MQ=255)                                                                      aaCGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAACAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCttt              >  1:21492/1‑150 (MQ=255)                                                                         ggTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCa           <  1:1722299/150‑1 (MQ=255)                                                                         ggTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCa           <  1:1722297/150‑1 (MQ=255)                                                                         ggTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGGCTGCTTTAGGGGGACTCTTTCCa           <  1:720379/150‑1 (MQ=255)                                                                                gCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCATCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCatccggta    <  1:1619304/150‑8 (MQ=255)                                                                                  ccactGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCatccggtagt  >  1:566660/5‑141 (MQ=255)                                                                                                                                                      |                                                                                  GATGCGTTAACCCTGCAGGCACCTGCGCAGCGCGTGACGCTGGAATTAAGCGGTTGCCCGATAGATGCCAACGGTTTTTGCCCAATGGATAAGTTTGATCGCGTATTGAATGAAGCGGTGAAATAACAGAAAACTCCCCCGCGTGAAGCCTGTCTCTTATACACAAATCCCCACCCGGGGATTTGTGATGTCTGTCAGTCTGCTTTAGGGGGACTCTTTCCA‑‑‑‑‑‑‑‑‑  >  Xen14_118/3134‑3355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.