New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_110	1 =	0 (0.000)	17 (0.030)	15/246	1.8	100%	intergenic (–/+87)	–/ompW	–/Outer membrane protein W
	?	Xen14_168	26 =	0 (0.000)					intergenic (–/+34)	–/Xen14_04774	–/IS200/IS605 family transposase IS200C

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACGGGTCAAGGCGTACGTTGTCAGAATA  >  Xen14_110/1‑150                                                                         |                                                                                                                                                      ttccctatccgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGAt                                                                          >  1:2858717‑M1/73‑150 (MQ=255)      tatccggacagcccttttacgggccgtaagtaatgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGGAAGAGAGCCTTAGAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTaa                                                                     >  1:2249246‑M1/68‑150 (MQ=255)          cgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTaaaaaa                                                                 >  1:170265‑M1/64‑150 (MQ=255)          cgggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTaaaaaa                                                                 >  1:2161050‑M1/64‑150 (MQ=255)            ggcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAAtt                                                               >  1:3276934‑M1/62‑150 (MQ=255)             gcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAACACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTa                                                              <  1:3587897‑M1/90‑1 (MQ=255)             gcagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTa                                                              <  1:3191827‑M1/90‑1 (MQ=255)              cagcccgtttacgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAg                                                             >  1:138490‑M1/60‑150 (MQ=255)                        acgggccgtaagtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAAc                                                   >  1:2671345‑M1/50‑150 (MQ=255)                                   gtaacgaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAAAGAAc                                        >  1:2255205‑M1/39‑150 (MQ=255)                                        gaagttggatgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATaaa                                   <  1:3837975‑M1/117‑1 (MQ=255)                                                atgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACg                           <  1:1278523‑M1/125‑1 (MQ=255)                                                 tgcaaatgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACgg                          >  1:3514394‑M1/25‑150 (MQ=255)                                                       tgtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACGGGTCAAg                    <  1:80880‑M1/132‑1 (MQ=255)                                                        gtcagatcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGaa                                                           <  1:657636‑M1/93‑1 (MQ=255)                                                             atcgtgtgcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACGGGTCAAGGCGTAc              <  1:2466312‑M1/138‑1 (MQ=255)                                                                    gcgccTGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACGGGTCAAGGCGTACGTTGTCa       <  1:3096028‑M1/145‑1 (MQ=255)                                                                         tGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACGGGTCAAGGCGTACGTTGTCAGAATa  >  1:2046468/1‑150 (MQ=255)                                                                         |                                                                                                                                                      ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTAGGGCGCGGCTGGTAAGAGAGCCTTATAGGCGCATTTGAAAAACCTCCGGCTATGCCGGAGGATATTTATTGATGGTAAAAAATTAGAAGCGGTAACCCGCAGAGAACATAAATACCCACGGGTCAAGGCGTACGTTGTCAGAATA  >  Xen14_110/1‑150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.