New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Xen14_107	4859 =	NA (NA)	74 (0.760) +CC	45/292	0.2	42.1%	coding (263/333 nt)	torR_1	TorCAD operon transcriptional regulatory protein TorR
	?	Xen14_85	2720 =	103 (0.780)					coding (689/819 nt)	Xen14_04464	hypothetical protein

GGAAATTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACG‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_107/4713‑4932                                                                                                                                                   |                                                                                       ggAAATTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATTAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTaa                                                                                     >  1:3535809/1‑150 (MQ=255)  gAAATTATGCAGAATCAGCCGGTGGATTTGATTNTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCTGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAg                                                                                    <  1:1775656/150‑1 (MQ=255)  gAAATTATGCAGAATCAGCCGGTGGATTTGATTNTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCTGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAg                                                                                    <  1:1775655/150‑1 (MQ=255)  gAAATTATGCAGAATCAGCCGGTGGATTTGATTNTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCTGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAg                                                                                    <  1:1775652/150‑1 (MQ=255)  gAAATTATGCAGAATCAGCCGGTGGATTTGATTNTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCTGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAg                                                                                    <  1:1775651/150‑1 (MQ=255)           cAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTg                                                                           >  1:1185183/1‑150 (MQ=255)           cAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTg                                                                           <  1:471672/150‑1 (MQ=255)           cAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTAATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTg                                                                           >  1:126424/1‑150 (MQ=255)               aTCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTa                                                                                >  1:1204217/1‑141 (MQ=255)                     cGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTAt                                                                 >  1:2158187/1‑150 (MQ=255)                     cGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTAt                                                                 >  1:2158183/1‑150 (MQ=255)                      ggTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATg                                                                <  1:1591721/150‑1 (MQ=255)                      ggTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATg                                                                <  1:1953451/150‑1 (MQ=255)                           aTTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGcc                                                           >  1:284358/1‑150 (MQ=255)                           aTTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGCATGTAGcc                                                           >  1:2604754/1‑150 (MQ=255)                              tGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATc                                                        <  1:1529536/150‑1 (MQ=255)                              tGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATc                                                        <  1:1262014/150‑1 (MQ=255)                              tGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATc                                                        <  1:1262008/150‑1 (MQ=255)                              tGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATc                                                        <  1:1529533/150‑1 (MQ=255)                                aTTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGNGAGAACGCTCAACNGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTNAGCGTAAACTGACCGCCGTATGTAGCCATCAg                                                      <  1:3819695/150‑1 (MQ=255)                                   ctgctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACg                                                   >  1:1049159/1‑150 (MQ=255)                                     gctgGATATCAATTTGTCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACgag                                                 <  1:2021934/150‑1 (MQ=255)                                     gctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACgag                                                 >  1:193980/1‑150 (MQ=255)                                     gctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACgag                                                 >  1:193982/1‑150 (MQ=255)                                     gctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACgag                                                 >  1:193981/1‑150 (MQ=255)                                     gctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACgag                                                 >  1:193978/1‑150 (MQ=255)                                     gctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACgag                                                 <  1:451989/150‑1 (MQ=255)                                     gctgGACATCAATTTGCCCGAGGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACgag                                                 <  1:2249637/150‑1 (MQ=255)                                      ctgGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACgaga                                                >  1:891119/1‑150 (MQ=255)                                           tatCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTgg                                           <  1:2222055/150‑1 (MQ=255)                                             tCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTa                                         <  1:1841789/150‑1 (MQ=255)                                              cAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTaa                                        >  1:3012981/1‑150 (MQ=255)                                              cAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTaa                                        >  1:3012982/1‑150 (MQ=255)                                               aaTTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAAc                                       >  1:2494228/1‑150 (MQ=255)                                               aaTTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAAc                                       <  1:3348528/150‑1 (MQ=255)                                                  ttGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGCTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTa                                    <  1:2268489/150‑1 (MQ=255)                                                     cccGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGGACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGAc                                 >  1:2695424/1‑150 (MQ=255)                                                     cccGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGAc                                 >  1:811616/1‑150 (MQ=255)                                                     cccGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGAc                                 >  1:811617/1‑150 (MQ=255)                                                     cccGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGAc                                 >  1:3113561/1‑150 (MQ=255)                                                     cccGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGAc                                 >  1:2695426/1‑150 (MQ=255)                                                        gATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGcc                              <  1:3395381/150‑1 (MQ=255)                                                        gATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGcc                              <  1:3395382/150‑1 (MQ=255)                                                         aTGAAAATGGCCTGATGCTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGccc                             >  1:2229887/1‑150 (MQ=255)                                                         aTGAAAATGGCCTGATGCTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGccc                             >  1:2229885/1‑150 (MQ=255)                                                           gAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCAt                           >  1:2974789/1‑150 (MQ=255)                                                             aaaTGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCt                         <  1:1469904/150‑1 (MQ=255)                                                              aaTGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTg                        <  1:3186053/150‑1 (MQ=255)                                                                tGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGat                      <  1:3240256/150‑1 (MQ=255)                                                                  gCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGatat                    >  1:3193529/1‑150 (MQ=255)                                                                         gTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACgga             >  1:2252745/1‑148 (MQ=255)                                                                         gTTAACCCGCGCCCTGCGAGAACGCTCAACAGTGGGGATTATTCTGGTTACCGGACGCAGCTATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACgga             >  1:3837927/1‑148 (MQ=255)                                                                           tAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggaca           >  1:1700124/1‑146 (MQ=255)                                                                             aCCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACggacatc         <  1:1973554/150‑7 (MQ=255)                                                                                    cccTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGActgacatctaagtat  >  1:1800220/1‑136 (MQ=255)                                                                                                                                                   |                                                                                       GGAAATTATGCAGAATCAGCCGGTGGATTTGATTCTGCTGGATATCAATTTGCCCGATGAAAATGGCCTGATGTTAACCCGCGCCCTGCGAGAACGCTCAACGGTGGGGATTATTCTGGTTACCGGACGCAGCGATCGGATTGACCGTAAGCGTAAACTGACCGCCGTATGTAGCCATCAGACGAGAATTGGTAACTTAGACGCCCATCTGATATAGACG‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Xen14_107/4713‑4932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.