| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | Xen14_19 | 57,809 | Δ1 bp | intergenic (‑425/+56) | fimA_2 ← / ← Xen14_02204 | Type‑1 fimbrial protein, A chain/ISKra4 family transposase ISCep1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Xen14_19 | 57,809 | 0 | T | . | 100.0% | 23.4 / NA | 7 | intergenic (‑425/+56) | fimA_2/Xen14_02204 | Type‑1 fimbrial protein, A chain/ISKra4 family transposase ISCep1 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (4/3); total (4/3) | |||||||||||
GTTAGCTTTACATATAGCGGAGGTGATGTGAAATTAATTTACAAGAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATAGACAGTTTGGCCCCAATTGTCTTGTATTTATTTGTTTTTTAACTTTATTATTAATAAGTTAAATCAAGCTTCTTCTCTTTTTAATTTTTCGTTTATGAGATTATTTCTTTCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACA > Xen14_19/57664‑57958 | gTTAGCTTTACATATAGCGGAGGTGATGTGAAATTAATTTACAAGAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGTTTTTTAATATTTTTATGTTTGAGAAACAGTACGTAACTTATTTATGATATAGACAGTT‑GGccc > 1:3505461/1‑150 (MQ=255)gTTAGCTTTACATATAGCGGAGGTGATGTGAAATTAATTTACAAGAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATAGACAGTT‑GGccc > 1:184167/1‑150 (MQ=255)gTTAGCTTTACATATAGCGGAGGTGATGTGAAATTAATTTACAAGAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATAGACAGTT‑GGccc > 1:3125051/1‑150 (MQ=255) atatAGCGGAGGTGATGTGAAATTAATTTACAAGAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATAGACAGTT‑GGCCCCAATTGTCTTg > 1:927632/1‑150 (MQ=255) tgAAATTAATTTACAAGAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATAGACAGTT‑GGCCCCAATTGTCTTGTATTTATTTGTTTTTTa < 1:1501364/150‑1 (MQ=255) taattTACAAGAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATAGACAGTT‑GGCCCCAATTGTCTTGTATTTATTTGTTTTTTAACTtta < 1:2273671/150‑1 (MQ=255) gATGCTTTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATAGACAGTT‑GGCCCCAATTGTCTTGTATTTATTTGTTTTTTAACTTTATTATTAATAAGTTAAATCAAGCTTCTTCTCTTTTTAAt < 1:3343916/150‑1 (MQ=255) tGGCCCCAATTGTCTTGTATTTATTTGTTTTTTAACTTTATTATTAATAAGTTAAATCAAGCTTCTTCTCTTTTTAATTTTTCGTTTATGAGATTATTTCTTTCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGcaca > 1:1624126/1‑150 (MQ=255) | GTTAGCTTTACATATAGCGGAGGTGATGTGAAATTAATTTACAAGAGAAATAATTTACATATCAAACAGTTAGATGCTTTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATAGACAGTTTGGCCCCAATTGTCTTGTATTTATTTGTTTTTTAACTTTATTATTAATAAGTTAAATCAAGCTTCTTCTCTTTTTAATTTTTCGTTTATGAGATTATTTCTTTCCCATAATCCGGCAAAACGAGCAGCATTACTGGCGGTATAACGCACA > Xen14_19/57664‑57958 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |