locus_tag chrom start end strand product gene CoreName CoreHMM CoreBlast ContextName ContextHMM AOI_1_1 NZ_PYBW01000043.1_AOI_1 3 674 - AOI_1_2 NZ_PYBW01000043.1_AOI_1 768 1796 - Fructose import permease protein FrcC frcC AOI_1_3 NZ_PYBW01000043.1_AOI_1 1793 2593 - Fructose import ATP-binding protein FrcA frcA ABC_tran PF00005.31 AOI_1_3 NZ_PYBW01000043.1_AOI_1 1793 2593 - Fructose import ATP-binding protein FrcA frcA galliderm_ABC TIGR03740.1 AOI_1_3 NZ_PYBW01000043.1_AOI_1 1793 2593 - Fructose import ATP-binding protein FrcA frcA galliderm_ABC TIGR03740.1 AOI_1_sORF_0001 NZ_PYBW01000043.1_AOI_1 2663 2996 + AOI_1_sORF_0002 NZ_PYBW01000043.1_AOI_1 2697 2955 + AOI_1_sORF_0008 NZ_PYBW01000043.1_AOI_1 2715 3009 - AOI_1_sORF_0009 NZ_PYBW01000043.1_AOI_1 2715 2925 - AOI_1_sORF_0003 NZ_PYBW01000043.1_AOI_1 2730 2955 + AOI_1_sORF_0004 NZ_PYBW01000043.1_AOI_1 2780 2996 + AOI_1_sORF_0005 NZ_PYBW01000043.1_AOI_1 2810 2996 + AOI_1_4 NZ_PYBW01000043.1_AOI_1 3026 3928 + 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase mshB AOI_1_5 NZ_PYBW01000043.1_AOI_1 3989 4903 - FAD_binding_3 PF01494.23 AOI_1_6 NZ_PYBW01000043.1_AOI_1 4990 5241 - AOI_1_7 NZ_PYBW01000043.1_AOI_1 5417 5812 - AOI_1_sORF_0007 NZ_PYBW01000043.1_AOI_1 5832 6045 - AOI_1_8 NZ_PYBW01000043.1_AOI_1 6241 8310 + ABC_tran PF00005.31 AOI_1_9 NZ_PYBW01000043.1_AOI_1 8329 9861 + AOI_1_10 NZ_PYBW01000043.1_AOI_1 9913 12555 - Alpha-glucosidase 2 aggR AOI_1_sORF_0004 NZ_PYBW01000043.1_AOI_1 12667 13009 - AOI_1_sORF_0006 NZ_PYBW01000043.1_AOI_1 12667 12898 - AOI_1_sORF_0005 NZ_PYBW01000043.1_AOI_1 12689 12938 - AOI_1_sORF_0003 NZ_PYBW01000043.1_AOI_1 12962 13199 - AOI_1_sORF_0006 NZ_PYBW01000043.1_AOI_1 13031 13250 + AOI_1_sORF_0007 NZ_PYBW01000043.1_AOI_1 13067 13250 + AOI_1_sORF_0002 NZ_PYBW01000043.1_AOI_1 13405 13588 - AOI_1_11 NZ_PYBW01000043.1_AOI_1 13640 14704 + AOI_1_12 NZ_PYBW01000043.1_AOI_1 14948 15151 + Thiopep_pre PF19409.3 1.37.026 AOI_1_12 NZ_PYBW01000043.1_AOI_1 14948 15151 + thiazolyl_B NF033400.3 1.37.026 AOI_1_13 NZ_PYBW01000043.1_AOI_1 15199 15375 + Thiopep_pre PF19409.3 1.37.026 AOI_1_13 NZ_PYBW01000043.1_AOI_1 15199 15375 + thiazolyl_B NF033400.3 1.37.026 AOI_1_13 NZ_PYBW01000043.1_AOI_1 15199 15375 + thiopep_precurs TIGR03892.1 1.37.026 AOI_1_13 NZ_PYBW01000043.1_AOI_1 15199 15375 + thiopep_precurs TIGR03892.1 1.37.026 AOI_1_14 NZ_PYBW01000043.1_AOI_1 15423 15611 + Thiopep_pre PF19409.3 1.37.026 AOI_1_14 NZ_PYBW01000043.1_AOI_1 15423 15611 + thiazolyl_B NF033400.3 1.37.026 AOI_1_15 NZ_PYBW01000043.1_AOI_1 15695 18319 + Lant_dehydr_N PF04738.17 AOI_1_15 NZ_PYBW01000043.1_AOI_1 15695 18319 + Lant_dehydr_N PF04738.17 AOI_1_16 NZ_PYBW01000043.1_AOI_1 18319 19614 + Lant_dehydr_C PF14028.10 AOI_1_17 NZ_PYBW01000043.1_AOI_1 19667 21358 + AOI_1_18 NZ_PYBW01000043.1_AOI_1 21355 23250 + YcaO PF02624.20 AOI_1_18 NZ_PYBW01000043.1_AOI_1 21355 23250 + TIGR00702 TIGR00702.1 AOI_1_18 NZ_PYBW01000043.1_AOI_1 21355 23250 + TIGR00702 TIGR00702.1 AOI_1_19 NZ_PYBW01000043.1_AOI_1 23273 24907 + Lant_dehydr_C PF14028.10 AOI_1_19 NZ_PYBW01000043.1_AOI_1 23273 24907 + antibiot_sagB TIGR03605.1 AOI_1_19 NZ_PYBW01000043.1_AOI_1 23273 24907 + thiopep_ocin TIGR03891.1 AOI_1_19 NZ_PYBW01000043.1_AOI_1 23273 24907 + thiopep_ocin TIGR03891.1 AOI_1_20 NZ_PYBW01000043.1_AOI_1 24931 25581 - AOI_1_21 NZ_PYBW01000043.1_AOI_1 25684 26232 + AOI_1_22 NZ_PYBW01000043.1_AOI_1 26271 26660 + AOI_1_23 NZ_PYBW01000043.1_AOI_1 26657 27223 + AOI_1_24 NZ_PYBW01000043.1_AOI_1 27387 27710 + AOI_1_25 NZ_PYBW01000043.1_AOI_1 27707 28969 + Uncharacterized protein R00370 guaB3 AOI_1_26 NZ_PYBW01000043.1_AOI_1 29087 32665 - AOI_1_sORF_0001 NZ_PYBW01000043.1_AOI_1 32720 32960 - AOI_1_27 NZ_PYBW01000043.1_AOI_1 32987 34645 - Exochitinase 1 chi01 AOI_1_28 NZ_PYBW01000043.1_AOI_1 34898 36118 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 ispH2 AOI_1_29 NZ_PYBW01000043.1_AOI_1 36248 37489 - 3-oxoacyl-[acyl-carrier-protein] synthase 2 fabF AOI_1_30 NZ_PYBW01000043.1_AOI_1 37486 37740 - AOI_1_31 NZ_PYBW01000043.1_AOI_1 37737 38828 - Beta-ketoacyl-[acyl-carrier-protein] synthase III 3 fabH3 AOI_1_32 NZ_PYBW01000043.1_AOI_1 38825 39340 - Galactitol 2-dehydrogenase (L-tagatose-forming) gatC AOI_2_1 NZ_PYBW01000043.1_AOI_2 338 775 + AOI_2_2 NZ_PYBW01000043.1_AOI_2 798 1262 - AOI_2_3 NZ_PYBW01000043.1_AOI_2 1387 2070 - Tetracycline repressor protein class A from transposon 1721 tetR AOI_2_4 NZ_PYBW01000043.1_AOI_2 2240 3796 + Low-affinity putrescine importer PlaP plaP AOI_2_5 NZ_PYBW01000043.1_AOI_2 3961 5736 - AOI_2_6 NZ_PYBW01000043.1_AOI_2 5745 7136 - Uncharacterized HTH-type transcriptional regulator y4dJ yeiF AOI_2_7 NZ_PYBW01000043.1_AOI_2 7336 8100 + AOI_2_8 NZ_PYBW01000043.1_AOI_2 8122 8979 - AOI_2_sORF_0022 NZ_PYBW01000043.1_AOI_2 9150 9420 - AOI_2_sORF_0023 NZ_PYBW01000043.1_AOI_2 9150 9360 - AOI_2_9 NZ_PYBW01000043.1_AOI_2 9508 11409 - AOI_2_10 NZ_PYBW01000043.1_AOI_2 11406 12314 - Probable glutamine ABC transporter permease protein GlnM glnM AOI_2_sORF_0001 NZ_PYBW01000043.1_AOI_2 12321 12606 + AOI_2_sORF_0002 NZ_PYBW01000043.1_AOI_2 12369 12606 + AOI_2_sORF_0017 NZ_PYBW01000043.1_AOI_2 12420 12846 - AOI_2_sORF_0018 NZ_PYBW01000043.1_AOI_2 12420 12786 - AOI_2_sORF_0019 NZ_PYBW01000043.1_AOI_2 12420 12756 - AOI_2_sORF_0021 NZ_PYBW01000043.1_AOI_2 12420 12663 - AOI_2_sORF_0020 NZ_PYBW01000043.1_AOI_2 12506 12713 - AOI_2_11 NZ_PYBW01000043.1_AOI_2 12873 14045 + Alkanesulfonate monooxygenase ssuD Bac_luciferase PF00296.24 AOI_2_12 NZ_PYBW01000043.1_AOI_2 14042 14956 + Lysine/arginine/ornithine-binding periplasmic protein argT AOI_2_13 NZ_PYBW01000043.1_AOI_2 14970 15740 + L-cystine import ATP-binding protein TcyC tcyC ABC_tran PF00005.31 AOI_2_13 NZ_PYBW01000043.1_AOI_2 14970 15740 + L-cystine import ATP-binding protein TcyC tcyC galliderm_ABC TIGR03740.1 AOI_2_13 NZ_PYBW01000043.1_AOI_2 14970 15740 + L-cystine import ATP-binding protein TcyC tcyC galliderm_ABC TIGR03740.1 AOI_2_14 NZ_PYBW01000043.1_AOI_2 16114 16425 + AOI_2_15 NZ_PYBW01000043.1_AOI_2 16533 17909 + AOI_2_16 NZ_PYBW01000043.1_AOI_2 18022 18378 + AOI_2_17 NZ_PYBW01000043.1_AOI_2 18420 19520 - Short chain isoprenyl diphosphate synthase idsA AOI_2_18 NZ_PYBW01000043.1_AOI_2 19630 20310 - AOI_2_19 NZ_PYBW01000043.1_AOI_2 20423 20866 + AOI_2_20 NZ_PYBW01000043.1_AOI_2 20920 23169 - Membrane protein YdfJ ydfJ AOI_2_21 NZ_PYBW01000043.1_AOI_2 23306 23989 + Uncharacterized HTH-type transcriptional regulator Mb1846 eep AOI_2_sORF_0016 NZ_PYBW01000043.1_AOI_2 24208 24460 - AOI_2_22 NZ_PYBW01000043.1_AOI_2 24586 25146 - AOI_2_23 NZ_PYBW01000043.1_AOI_2 25353 26612 - AOI_2_24 NZ_PYBW01000043.1_AOI_2 26756 27670 - AOI_2_25 NZ_PYBW01000043.1_AOI_2 27801 28526 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG fabG AOI_2_26 NZ_PYBW01000043.1_AOI_2 28631 29494 + HTH-type transcriptional regulator AlsR alsR AOI_2_27 NZ_PYBW01000043.1_AOI_2 29544 30722 - Citrate synthase 1 citA AOI_2_28 NZ_PYBW01000043.1_AOI_2 30877 32109 + Citrate synthase citZ AOI_2_29 NZ_PYBW01000043.1_AOI_2 32236 32883 - Uncharacterized protein YdfE ydfE AOI_2_sORF_0003 NZ_PYBW01000043.1_AOI_2 32997 33336 + AOI_2_sORF_0014 NZ_PYBW01000043.1_AOI_2 33023 33377 - AOI_2_sORF_0011 NZ_PYBW01000043.1_AOI_2 33040 33523 - AOI_2_sORF_0015 NZ_PYBW01000043.1_AOI_2 33040 33328 - AOI_2_sORF_0004 NZ_PYBW01000043.1_AOI_2 33045 33336 + AOI_2_sORF_0010 NZ_PYBW01000043.1_AOI_2 33153 33561 - AOI_2_sORF_0012 NZ_PYBW01000043.1_AOI_2 33153 33447 - AOI_2_sORF_0013 NZ_PYBW01000043.1_AOI_2 33153 33408 - AOI_2_sORF_0005 NZ_PYBW01000043.1_AOI_2 33163 33538 + AOI_2_sORF_0006 NZ_PYBW01000043.1_AOI_2 33199 33538 + AOI_2_sORF_0007 NZ_PYBW01000043.1_AOI_2 33352 33538 + AOI_2_sORF_0008 NZ_PYBW01000043.1_AOI_2 33401 33683 - AOI_2_sORF_0009 NZ_PYBW01000043.1_AOI_2 33401 33626 - AOI_2_30 NZ_PYBW01000043.1_AOI_2 33710 34879 - Alanine--tRNA ligase alaS AOI_2_31 NZ_PYBW01000043.1_AOI_2 35211 36917 + Lysine--tRNA ligase lysS AOI_2_32 NZ_PYBW01000043.1_AOI_2 37162 37578 - AOI_2_33 NZ_PYBW01000043.1_AOI_2 37575 39557 - Probable cation-transporting P-type ATPase J ctpJ AOI_2_34 NZ_PYBW01000043.1_AOI_2 39656 40051 + HTH-type transcriptional regulator NmtR nmtR AOI_2_35 NZ_PYBW01000043.1_AOI_2 40134 40664 - AOI_2_36 NZ_PYBW01000043.1_AOI_2 40710 41735 + AOI_2_37 NZ_PYBW01000043.1_AOI_2 41794 43032 + AOI_2_38 NZ_PYBW01000043.1_AOI_2 43066 43935 - Uncharacterized carboxylesterase nap nap AOI_2_39 NZ_PYBW01000043.1_AOI_2 44029 44514 + Uncharacterized HTH-type transcriptional regulator YcgE ycgE AOI_2_40 NZ_PYBW01000043.1_AOI_2 44591 45049 + Uncharacterized 17.2 kDa protein in melC2-rnhH intergenic region ymeB AOI_2_41 NZ_PYBW01000043.1_AOI_2 45158 45565 - AOI_2_42 NZ_PYBW01000043.1_AOI_2 45675 46136 - HATPase_c_2 PF13581.10 AOI_2_sORF_0008 NZ_PYBW01000043.1_AOI_2 46149 46344 + AOI_2_43 NZ_PYBW01000043.1_AOI_2 46385 47380 + Pyridoxal 4-dehydrogenase pld1 AOI_2_44 NZ_PYBW01000043.1_AOI_2 47642 48283 + AOI_2_45 NZ_PYBW01000043.1_AOI_2 48303 49949 + Rhodocoxin reductase thcD AOI_2_46 NZ_PYBW01000043.1_AOI_2 49946 50257 + AOI_2_47 NZ_PYBW01000043.1_AOI_2 50294 51067 + Sensory transduction protein RegX3 regX3 Response_reg PF00072.28 AOI_2_47 NZ_PYBW01000043.1_AOI_2 50294 51067 + Sensory transduction protein RegX3 regX3 Trans_reg_C PF00486.32 AOI_2_48 NZ_PYBW01000043.1_AOI_2 51064 52434 + Sensor histidine kinase CpxA cpxA HisKA PF00512.29 AOI_2_48 NZ_PYBW01000043.1_AOI_2 51064 52434 + Sensor histidine kinase CpxA cpxA HATPase_c_2 PF13581.10 AOI_2_49 NZ_PYBW01000043.1_AOI_2 52623 52946 + AOI_2_50 NZ_PYBW01000043.1_AOI_2 53134 54462 + AOI_2_51 NZ_PYBW01000043.1_AOI_2 54497 55516 - AOI_2_52 NZ_PYBW01000043.1_AOI_2 55646 56065 + Molybdenum-pterin-binding protein 3 mopIII AOI_2_53 NZ_PYBW01000043.1_AOI_2 56162 56875 - Guanine-specific ADP-ribosyl transferase sca4 AOI_2_sORF_0007 NZ_PYBW01000043.1_AOI_2 56931 57141 - AOI_2_54 NZ_PYBW01000043.1_AOI_2 57215 57784 - AOI_2_55 NZ_PYBW01000043.1_AOI_2 58219 61005 + Probable SapB synthase ramC Pkinase PF00069.29 AOI_2_55 NZ_PYBW01000043.1_AOI_2 58219 61005 + Probable SapB synthase ramC LANC_like PF05147.17 AOI_2_55 NZ_PYBW01000043.1_AOI_2 58219 61005 + Probable SapB synthase ramC lanti_2_LanM TIGR03897.1 AOI_2_56 NZ_PYBW01000043.1_AOI_2 61011 61130 + AOI_2_57 NZ_PYBW01000043.1_AOI_2 61354 62442 + S-(hydroxymethyl)mycothiol dehydrogenase fadG ADH_zinc_N PF00107.30 AOI_2_58 NZ_PYBW01000043.1_AOI_2 62442 63071 + Hydroxyacylglutathione hydrolase GloC gloC AOI_2_59 NZ_PYBW01000043.1_AOI_2 63318 63674 - AOI_2_60 NZ_PYBW01000043.1_AOI_2 63898 65370 - AOI_2_61 NZ_PYBW01000043.1_AOI_2 65470 65739 + AOI_2_62 NZ_PYBW01000043.1_AOI_2 65646 67199 - AOI_2_sORF_0009 NZ_PYBW01000043.1_AOI_2 67233 67425 + AOI_2_sORF_0010 NZ_PYBW01000043.1_AOI_2 67321 67540 + AOI_2_63 NZ_PYBW01000043.1_AOI_2 67545 68552 - D-allose transport system permease protein AlsC alsC AOI_2_64 NZ_PYBW01000043.1_AOI_2 68549 70117 - Ribose import ATP-binding protein RbsA 3 rbsA3 ABC_tran PF00005.31 AOI_2_64 NZ_PYBW01000043.1_AOI_2 68549 70117 - Ribose import ATP-binding protein RbsA 3 rbsA3 ABC_tran PF00005.31 AOI_2_64 NZ_PYBW01000043.1_AOI_2 68549 70117 - Ribose import ATP-binding protein RbsA 3 rbsA3 galliderm_ABC TIGR03740.1 AOI_2_64 NZ_PYBW01000043.1_AOI_2 68549 70117 - Ribose import ATP-binding protein RbsA 3 rbsA3 galliderm_ABC TIGR03740.1 AOI_2_64 NZ_PYBW01000043.1_AOI_2 68549 70117 - Ribose import ATP-binding protein RbsA 3 rbsA3 galliderm_ABC TIGR03740.1 AOI_2_64 NZ_PYBW01000043.1_AOI_2 68549 70117 - Ribose import ATP-binding protein RbsA 3 rbsA3 galliderm_ABC TIGR03740.1 AOI_2_65 NZ_PYBW01000043.1_AOI_2 70123 71286 - AOI_2_66 NZ_PYBW01000043.1_AOI_2 71410 72456 - Lactose operon repressor lacI AOI_2_sORF_0011 NZ_PYBW01000043.1_AOI_2 72477 72699 + AOI_2_sORF_0012 NZ_PYBW01000043.1_AOI_2 72513 72699 + AOI_2_sORF_0013 NZ_PYBW01000043.1_AOI_2 72565 72964 + AOI_2_sORF_0003 NZ_PYBW01000043.1_AOI_2 72581 72938 - AOI_2_sORF_0004 NZ_PYBW01000043.1_AOI_2 72581 72881 - AOI_2_sORF_0006 NZ_PYBW01000043.1_AOI_2 72581 72770 - AOI_2_sORF_0005 NZ_PYBW01000043.1_AOI_2 72598 72835 - AOI_2_sORF_0014 NZ_PYBW01000043.1_AOI_2 72711 72900 + AOI_2_sORF_0015 NZ_PYBW01000043.1_AOI_2 72769 72964 + AOI_2_sORF_0016 NZ_PYBW01000043.1_AOI_2 72960 73161 + AOI_2_sORF_0002 NZ_PYBW01000043.1_AOI_2 72987 73221 - AOI_2_67 NZ_PYBW01000043.1_AOI_2 73222 74259 + Lactose operon repressor lacI AOI_2_68 NZ_PYBW01000043.1_AOI_2 74256 75338 - Aldose 1-epimerase mro AOI_2_69 NZ_PYBW01000043.1_AOI_2 75448 76953 - L-arabinose isomerase araA AOI_2_70 NZ_PYBW01000043.1_AOI_2 76968 77639 - L-ribulose-5-phosphate 4-epimerase UlaF ulaF AOI_2_71 NZ_PYBW01000043.1_AOI_2 77646 79382 - Ribulokinase araB AOI_2_sORF_0017 NZ_PYBW01000043.1_AOI_2 79409 79625 + AOI_2_sORF_0018 NZ_PYBW01000043.1_AOI_2 79552 79798 + AOI_2_72 NZ_PYBW01000043.1_AOI_2 79842 82841 + AOI_2_73 NZ_PYBW01000043.1_AOI_2 82975 84909 - AOI_2_74 NZ_PYBW01000043.1_AOI_2 85341 86867 - Endo-1,4-beta-xylanase A xlnA AOI_2_75 NZ_PYBW01000043.1_AOI_2 86970 88088 - Endo-1,4-beta-xylanase A xlnA AOI_2_76 NZ_PYBW01000043.1_AOI_2 88508 90742 + AOI_2_77 NZ_PYBW01000043.1_AOI_2 90933 92474 - AOI_2_78 NZ_PYBW01000043.1_AOI_2 92471 93367 - AOI_2_79 NZ_PYBW01000043.1_AOI_2 93402 93749 - L-rhamnose mutarotase rhaM AOI_2_80 NZ_PYBW01000043.1_AOI_2 93746 95746 - AOI_2_81 NZ_PYBW01000043.1_AOI_2 95782 96756 - Arabinooligosaccharides transport system permease protein AraQ araQ AOI_2_82 NZ_PYBW01000043.1_AOI_2 96746 97654 - Diacetylchitobiose uptake system permease protein NgcF ngcF AOI_2_83 NZ_PYBW01000043.1_AOI_2 97651 99018 - AOI_2_sORF_0001 NZ_PYBW01000043.1_AOI_2 99090 99279 - AOI_2_84 NZ_PYBW01000043.1_AOI_2 99381 100181 + Uncharacterized HTH-type transcriptional regulator YcbG ycbG AOI_2_85 NZ_PYBW01000043.1_AOI_2 100241 101125 - Uncharacterized protein slr1717 eep Asn_synthase PF00733.25 AOI_2_86 NZ_PYBW01000043.1_AOI_2 101125 102330 - Putative nickel insertion protein yrrT AOI_2_87 NZ_PYBW01000043.1_AOI_2 102327 103007 - Pyridinium-3,5-biscarboxylic acid mononucleotide synthase larB AOI_2_88 NZ_PYBW01000043.1_AOI_2 103034 103321 - Glycerate kinase glxK