locus_tag chrom start end strand product gene CoreName CoreHMM CoreBlast ContextName ContextHMM AOI_1_1 NC_010545.1_AOI_1 2 3427 + Bifunctional protein PutA putA AOI_1_2 NC_010545.1_AOI_1 3424 4557 - Peptide chain release factor 2 prfB AOI_1_3 NC_010545.1_AOI_1 4588 5472 + Histidinol-phosphatase hisN AOI_1_4 NC_010545.1_AOI_1 5496 6317 + Histidinol-phosphatase hisN AOI_1_5 NC_010545.1_AOI_1 6408 7973 - Succinate-semialdehyde dehydrogenase sad AOI_1_sORF_0001 NC_010545.1_AOI_1 7983 8169 + AOI_1_6 NC_010545.1_AOI_1 8232 9926 + Glucose-6-phosphate isomerase pgi AOI_1_7 NC_010545.1_AOI_1 9990 10763 + Glucosamine-6-phosphate deaminase nagB AOI_1_8 NC_010545.1_AOI_1 11020 12573 + NAD(P) transhydrogenase subunit alpha pntA ADH_zinc_N PF00107.30 AOI_1_9 NC_010545.1_AOI_1 12577 14064 + NAD(P) transhydrogenase subunit beta pntB AOI_1_10 NC_010545.1_AOI_1 14225 14848 - AOI_1_11 NC_010545.1_AOI_1 14848 15741 - AOI_1_12 NC_010545.1_AOI_1 16166 17038 - Probable endonuclease 8 2 nei AOI_1_13 NC_010545.1_AOI_1 17097 22190 - Probable ATP-dependent helicase Lhr lhr AOI_1_14 NC_010545.1_AOI_1 22226 23014 + 3'-phosphoadenosine 5'-phosphate phosphatase cysQ AOI_1_15 NC_010545.1_AOI_1 23074 23895 + Thymidylate synthase thyA AOI_1_16 NC_010545.1_AOI_1 23895 24584 + Dihydrofolate reductase folA AOI_1_sORF_0002 NC_010545.1_AOI_1 24630 24813 + AOI_1_17 NC_010545.1_AOI_1 24859 25236 + AOI_1_18 NC_010545.1_AOI_1 25286 26893 + Monocarboxylic acid transporter mctC AOI_1_19 NC_010545.1_AOI_1 27254 28120 + Uncharacterized protein Mb2919c yrrT AOI_1_sORF_0011 NC_010545.1_AOI_1 28176 28599 - AOI_1_sORF_0012 NC_010545.1_AOI_1 28176 28548 - AOI_1_sORF_0013 NC_010545.1_AOI_1 28176 28362 - AOI_1_sORF_0003 NC_010545.1_AOI_1 28202 28436 + AOI_1_sORF_0004 NC_010545.1_AOI_1 28232 28436 + AOI_1_sORF_0005 NC_010545.1_AOI_1 28361 28916 - AOI_1_sORF_0006 NC_010545.1_AOI_1 28361 28886 - AOI_1_sORF_0007 NC_010545.1_AOI_1 28361 28805 - AOI_1_sORF_0008 NC_010545.1_AOI_1 28361 28760 - AOI_1_sORF_0009 NC_010545.1_AOI_1 28361 28715 - AOI_1_sORF_0010 NC_010545.1_AOI_1 28361 28661 - AOI_1_sORF_0004 NC_010545.1_AOI_1 28870 29071 - AOI_1_20 NC_010545.1_AOI_1 29079 29591 + AOI_1_sORF_0001 NC_010545.1_AOI_1 29621 29930 - AOI_1_sORF_0003 NC_010545.1_AOI_1 29621 29834 - AOI_1_sORF_0005 NC_010545.1_AOI_1 29668 29941 + AOI_1_sORF_0002 NC_010545.1_AOI_1 29691 29892 - AOI_2_1 NC_010545.1_AOI_2 2 850 - Uncharacterized peptidase y4sO yeiF AOI_2_sORF_0001 NC_010545.1_AOI_2 1044 1227 + AOI_2_2 NC_010545.1_AOI_2 1232 2047 + AOI_2_3 NC_010545.1_AOI_2 2260 3153 - Phosphoribosylaminoimidazole-succinocarboxamide synthase purC AOI_2_4 NC_010545.1_AOI_2 3221 4438 - Uncharacterized protein Mb1524 fabG2 AOI_2_5 NC_010545.1_AOI_2 4484 4903 - AOI_2_6 NC_010545.1_AOI_2 4952 6394 - Adenylosuccinate lyase purB AOI_2_7 NC_010545.1_AOI_2 6450 7352 - Endonuclease 8 1 nei1 AOI_2_8 NC_010545.1_AOI_2 7371 8648 - Phosphoribosylamine--glycine ligase purD AOI_2_9 NC_010545.1_AOI_2 8741 9178 + Uncharacterized HIT-like protein ML2237 yhhZ AOI_2_10 NC_010545.1_AOI_2 9201 10064 + Triacylglycerol lipase lip AOI_2_11 NC_010545.1_AOI_2 10003 11592 - Probable sensor histidine kinase TcrY tcrY HisKA PF00512.29 AOI_2_11 NC_010545.1_AOI_2 10003 11592 - Probable sensor histidine kinase TcrY tcrY HATPase_c_2 PF13581.10 AOI_2_12 NC_010545.1_AOI_2 11605 12312 - Probable transcriptional regulatory protein TcrX tcrX Response_reg PF00072.28 AOI_2_12 NC_010545.1_AOI_2 11605 12312 - Probable transcriptional regulatory protein TcrX tcrX Trans_reg_C PF00486.32 AOI_2_13 NC_010545.1_AOI_2 12596 13402 + AOI_2_14 NC_010545.1_AOI_2 13503 14033 + Mycothiol acetyltransferase mshD AOI_2_15 NC_010545.1_AOI_2 14064 15827 - Phospholipase D pld AOI_2_16 NC_010545.1_AOI_2 15827 16045 - AOI_2_17 NC_010545.1_AOI_2 16481 17077 + Uncharacterized membrane protein YmcC ymcC AOI_2_18 NC_010545.1_AOI_2 17028 17786 + AOI_2_19 NC_010545.1_AOI_2 17789 18490 + AOI_2_20 NC_010545.1_AOI_2 18497 19468 + CurC-like AOI_2_21 NC_010545.1_AOI_2 19470 20864 + Uncharacterized protein in tfuA 3'region yteU YcaO PF02624.20 AOI_2_21 NC_010545.1_AOI_2 19470 20864 + Uncharacterized protein in tfuA 3'region yteU TIGR00702 TIGR00702.1 AOI_2_21 NC_010545.1_AOI_2 19470 20864 + Uncharacterized protein in tfuA 3'region yteU TIGR00702 TIGR00702.1 AOI_2_22 NC_010545.1_AOI_2 20876 21709 + Putative nitroreductase MJ1384 acaA antibiot_sagB TIGR03605.1 AOI_2_23 NC_010545.1_AOI_2 21706 22284 + AOI_2_24 NC_010545.1_AOI_2 22522 22689 + AOI_2_sORF_0002 NC_010545.1_AOI_2 22694 22898 + AOI_2_sORF_0003 NC_010545.1_AOI_2 22725 22908 + AOI_2_sORF_0007 NC_010545.1_AOI_2 22868 23183 - AOI_2_sORF_0008 NC_010545.1_AOI_2 22868 23051 - AOI_2_sORF_0004 NC_010545.1_AOI_2 22903 23128 + AOI_2_sORF_0005 NC_010545.1_AOI_2 22939 23128 + AOI_2_sORF_0005 NC_010545.1_AOI_2 23610 23886 - AOI_2_sORF_0006 NC_010545.1_AOI_2 23610 23796 - AOI_2_25 NC_010545.1_AOI_2 23984 25333 + Probable transposase for insertion sequence element traY AOI_2_sORF_0006 NC_010545.1_AOI_2 25438 25870 + AOI_2_sORF_0007 NC_010545.1_AOI_2 25504 25870 + AOI_2_sORF_0004 NC_010545.1_AOI_2 25589 25790 - AOI_2_sORF_0008 NC_010545.1_AOI_2 25597 25870 + AOI_2_sORF_0009 NC_010545.1_AOI_2 25642 25870 + AOI_2_sORF_0002 NC_010545.1_AOI_2 25759 26008 - AOI_2_sORF_0003 NC_010545.1_AOI_2 25759 25954 - AOI_2_sORF_0001 NC_010545.1_AOI_2 26023 26233 - AOI_2_26 NC_010545.1_AOI_2 26451 27005 + AOI_2_27 NC_010545.1_AOI_2 27021 27338 + Insertion element IS401 uncharacterized 12.4 kDa protein yisX AOI_2_28 NC_010545.1_AOI_2 27335 28249 + Putative transposase for insertion sequence element IS986/IS6110 IS1086 AOI_2_29 NC_010545.1_AOI_2 28590 29738 + AOI_2_30 NC_010545.1_AOI_2 30038 31708 + Threonine/serine exporter thrE AOI_2_31 NC_010545.1_AOI_2 31797 32198 + AOI_2_32 NC_010545.1_AOI_2 32253 33812 + Trehalose-6-phosphate synthase otsA AOI_2_33 NC_010545.1_AOI_2 33812 34324 + AOI_2_34 NC_010545.1_AOI_2 34388 35341 + Trehalose-phosphate phosphatase otsB AOI_2_35 NC_010545.1_AOI_2 35431 36561 - HTH-type transcriptional regulator IpsA ipsA AOI_2_36 NC_010545.1_AOI_2 36669 37709 + AOI_2_37 NC_010545.1_AOI_2 37706 38407 + Zinc import ATP-binding protein ZnuC znuC ABC_tran PF00005.31 AOI_2_37 NC_010545.1_AOI_2 37706 38407 + Zinc import ATP-binding protein ZnuC znuC galliderm_ABC TIGR03740.1 AOI_2_37 NC_010545.1_AOI_2 37706 38407 + Zinc import ATP-binding protein ZnuC znuC galliderm_ABC TIGR03740.1 AOI_2_38 NC_010545.1_AOI_2 38404 39411 + Manganese transport system membrane protein MntC mntC AOI_2_39 NC_010545.1_AOI_2 39497 40450 - Uncharacterized tRNA/rRNA methyltransferase Mflv_1447 fabG2 AOI_2_40 NC_010545.1_AOI_2 40545 41135 - Thiamine biosynthesis protein X thiX AOI_2_41 NC_010545.1_AOI_2 41235 42284 + AOI_2_42 NC_010545.1_AOI_2 42274 43461 + Hemin transport system permease protein HmuU hmuU AOI_2_43 NC_010545.1_AOI_2 43461 44237 + Hemin import ATP-binding protein HmuV hmuV ABC_tran PF00005.31 AOI_2_43 NC_010545.1_AOI_2 43461 44237 + Hemin import ATP-binding protein HmuV hmuV galliderm_ABC TIGR03740.1 AOI_2_43 NC_010545.1_AOI_2 43461 44237 + Hemin import ATP-binding protein HmuV hmuV galliderm_ABC TIGR03740.1 AOI_2_44 NC_010545.1_AOI_2 44260 44931 + Heme oxygenase hmuO AOI_2_45 NC_010545.1_AOI_2 44986 46485 - Cysteine--tRNA ligase cysS AOI_2_46 NC_010545.1_AOI_2 46648 47478 + Uncharacterized protein YisK yisK AOI_2_47 NC_010545.1_AOI_2 47597 47881 + AOI_2_48 NC_010545.1_AOI_2 47850 48338 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase ispF AOI_2_49 NC_010545.1_AOI_2 48384 49181 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ispD AOI_2_50 NC_010545.1_AOI_2 49244 49816 - RNA polymerase-binding transcription factor CarD carD AOI_2_51 NC_010545.1_AOI_2 50139 50711 + Uncharacterized protein Cgl2664/cg2949 yrrT AOI_2_52 NC_010545.1_AOI_2 50847 52247 + DNA repair protein RadA radA ABC_tran PF00005.31 AOI_2_53 NC_010545.1_AOI_2 52251 53018 - AOI_2_54 NC_010545.1_AOI_2 53168 53878 - Carbonic anhydrase 2 mtcA2 AOI_2_55 NC_010545.1_AOI_2 54070 55053 + Adenine DNA glycosylase mutY AOI_2_56 NC_010545.1_AOI_2 55243 56634 + Branched-chain amino acid permease BrnQ brnQ AOI_2_57 NC_010545.1_AOI_2 56719 58092 + AOI_2_58 NC_010545.1_AOI_2 58321 58479 - AOI_3_1 NC_010545.1_AOI_3 72 662 - Thiamine biosynthesis protein X thiX AOI_3_2 NC_010545.1_AOI_3 762 1811 + AOI_3_3 NC_010545.1_AOI_3 1801 2988 + Hemin transport system permease protein HmuU hmuU AOI_3_4 NC_010545.1_AOI_3 2988 3764 + Hemin import ATP-binding protein HmuV hmuV ABC_tran PF00005.31 AOI_3_4 NC_010545.1_AOI_3 2988 3764 + Hemin import ATP-binding protein HmuV hmuV galliderm_ABC TIGR03740.1 AOI_3_4 NC_010545.1_AOI_3 2988 3764 + Hemin import ATP-binding protein HmuV hmuV galliderm_ABC TIGR03740.1 AOI_3_5 NC_010545.1_AOI_3 3787 4458 + Heme oxygenase hmuO AOI_3_6 NC_010545.1_AOI_3 4513 6012 - Cysteine--tRNA ligase cysS AOI_3_7 NC_010545.1_AOI_3 6175 7005 + Uncharacterized protein YisK yisK AOI_3_8 NC_010545.1_AOI_3 7124 7408 + AOI_3_9 NC_010545.1_AOI_3 7377 7865 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase ispF AOI_3_10 NC_010545.1_AOI_3 7911 8708 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ispD AOI_3_11 NC_010545.1_AOI_3 8771 9343 - RNA polymerase-binding transcription factor CarD carD AOI_3_12 NC_010545.1_AOI_3 9666 10238 + Uncharacterized protein Cgl2664/cg2949 yrrT AOI_3_13 NC_010545.1_AOI_3 10374 11774 + DNA repair protein RadA radA ABC_tran PF00005.31 AOI_3_14 NC_010545.1_AOI_3 11778 12398 - AOI_3_15 NC_010545.1_AOI_3 12695 13405 - Carbonic anhydrase 2 mtcA2 AOI_3_16 NC_010545.1_AOI_3 13597 14580 + Adenine DNA glycosylase mutY AOI_3_17 NC_010545.1_AOI_3 14770 16161 + Branched-chain amino acid permease BrnQ brnQ AOI_3_18 NC_010545.1_AOI_3 16246 17619 + AOI_3_19 NC_010545.1_AOI_3 17848 20532 - ATP-dependent Clp protease ATP-binding subunit ClpC1 clpC1 ABC_tran PF00005.31 AOI_3_20 NC_010545.1_AOI_3 20934 22709 + 2-succinylbenzoate--CoA ligase menE AOI_3_21 NC_010545.1_AOI_3 22853 24460 - Putative phosphate permease Mb2302 yfbV AOI_3_22 NC_010545.1_AOI_3 24699 25904 - Probable acyl-CoA dehydrogenase YngJ yngJ AOI_3_23 NC_010545.1_AOI_3 25970 27439 - Probable acyl-CoA dehydrogenase YngJ yngJ AOI_3_24 NC_010545.1_AOI_3 27563 29110 - Lysine--tRNA ligase lysS AOI_3_25 NC_010545.1_AOI_3 29297 30505 - Flavohemoprotein hmp AOI_3_26 NC_010545.1_AOI_3 30543 31037 - HTH-type transcriptional repressor NsrR nsrR AOI_3_27 NC_010545.1_AOI_3 31181 31588 - Aspartate 1-decarboxylase panD AOI_3_28 NC_010545.1_AOI_3 31620 32612 - Pantothenate synthetase panC AOI_3_29 NC_010545.1_AOI_3 32618 33565 - AOI_3_30 NC_010545.1_AOI_3 33613 34830 - AOI_3_31 NC_010545.1_AOI_3 34857 35333 - AOI_3_32 NC_010545.1_AOI_3 35344 36012 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase folK AOI_3_33 NC_010545.1_AOI_3 36017 36394 - Dihydroneopterin aldolase folB AOI_3_34 NC_010545.1_AOI_3 36387 37340 - Dihydropteroate synthase folP1 AOI_3_35 NC_010545.1_AOI_3 37413 38027 - GTP cyclohydrolase 1 folE AOI_3_36 NC_010545.1_AOI_3 38048 40552 - ATP-dependent zinc metalloprotease FtsH ftsH AOI_3_37 NC_010545.1_AOI_3 40640 41242 - Hypoxanthine-guanine phosphoribosyltransferase hpt AOI_3_38 NC_010545.1_AOI_3 41235 42488 - tRNA(Ile)-lysidine synthase tilS AOI_3_39 NC_010545.1_AOI_3 42548 43924 - Carboxypeptidase Rv3627c dacB AOI_3_40 NC_010545.1_AOI_3 44068 44550 + Inorganic pyrophosphatase ppa AOI_3_41 NC_010545.1_AOI_3 44736 45503 + AOI_3_42 NC_010545.1_AOI_3 45643 46782 + AOI_3_43 NC_010545.1_AOI_3 46953 47390 + Uncharacterized protein YqhL yqhL AOI_3_44 NC_010545.1_AOI_3 47575 47832 + AOI_3_sORF_0001 NC_010545.1_AOI_3 47959 48157 + AOI_3_45 NC_010545.1_AOI_3 48186 49214 + Probable nitronate monooxygenase yrpB AOI_3_46 NC_010545.1_AOI_3 49334 50233 - Polyphosphate kinase PPK2B ppk2B AOI_3_47 NC_010545.1_AOI_3 50481 51155 + AOI_3_48 NC_010545.1_AOI_3 51424 51537 - AOI_3_49 NC_010545.1_AOI_3 51676 51915 - AOI_3_sORF_0002 NC_010545.1_AOI_3 52019 52271 - AOI_3_sORF_0003 NC_010545.1_AOI_3 52019 52223 - AOI_3_50 NC_010545.1_AOI_3 52505 54148 - Chaperonin GroEL 1 groEL1 AOI_3_51 NC_010545.1_AOI_3 54185 55780 + Cysteinylglycine-S-conjugate dipeptidase tpdA AOI_3_52 NC_010545.1_AOI_3 55785 57713 + Carboxylesterase estA AOI_3_sORF_0001 NC_010545.1_AOI_3 57852 58062 - AOI_3_53 NC_010545.1_AOI_3 58080 58139 +