Analyzing: GCF_002811125.1_ASM281112v1_genomic.fna Translate to six frames: NZ_NXEM01000029.1 Search for AOIs using hmm models in NZ_NXEM01000029.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000029.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000029.1 Define the AOI areas in NZ_NXEM01000029.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000029.1/NZ_NXEM01000029.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000019.1 Search for AOIs using hmm models in NZ_NXEM01000019.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000019.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000019.1 Define the AOI areas in NZ_NXEM01000019.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000019.1 Translate to six frames: NZ_NXEM01000022.1 Search for AOIs using hmm models in NZ_NXEM01000022.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000022.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000022.1 Define the AOI areas in NZ_NXEM01000022.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000022.1 Translate to six frames: NZ_NXEM01000016.1 Search for AOIs using hmm models in NZ_NXEM01000016.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000016.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000016.1 Define the AOI areas in NZ_NXEM01000016.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000016.1 Translate to six frames: NZ_NXEM01000015.1 Search for AOIs using hmm models in NZ_NXEM01000015.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000015.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000015.1 Define the AOI areas in NZ_NXEM01000015.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000015.1 Translate to six frames: NZ_NXEM01000003.1 Search for AOIs using hmm models in NZ_NXEM01000003.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000003.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000003.1 Define the AOI areas in NZ_NXEM01000003.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000003.1 Translate to six frames: NZ_NXEM01000002.1 Search for AOIs using hmm models in NZ_NXEM01000002.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000002.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000002.1 Define the AOI areas in NZ_NXEM01000002.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000002.1 Translate to six frames: NZ_NXEM01000017.1 Search for AOIs using hmm models in NZ_NXEM01000017.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000017.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000017.1 Define the AOI areas in NZ_NXEM01000017.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000017.1 Translate to six frames: NZ_NXEM01000001.1 Search for AOIs using hmm models in NZ_NXEM01000001.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000001.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000001.1 Define the AOI areas in NZ_NXEM01000001.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000001.1 Translate to six frames: NZ_NXEM01000006.1 Search for AOIs using hmm models in NZ_NXEM01000006.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000006.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000006.1 Define the AOI areas in NZ_NXEM01000006.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000006.1 Translate to six frames: NZ_NXEM01000008.1 Search for AOIs using hmm models in NZ_NXEM01000008.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000008.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000027.1 Search for AOIs using hmm models in NZ_NXEM01000027.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000027.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000027.1 Define the AOI areas in NZ_NXEM01000027.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000027.1/NZ_NXEM01000027.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000004.1 Search for AOIs using hmm models in NZ_NXEM01000004.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000004.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000005.1 Search for AOIs using hmm models in NZ_NXEM01000005.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000005.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000007.1 Search for AOIs using hmm models in NZ_NXEM01000007.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000007.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000013.1 Search for AOIs using hmm models in NZ_NXEM01000013.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000013.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000014.1 Search for AOIs using hmm models in NZ_NXEM01000014.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000014.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000025.1 Search for AOIs using hmm models in NZ_NXEM01000025.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000025.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000025.1 Define the AOI areas in NZ_NXEM01000025.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000025.1/NZ_NXEM01000025.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000026.1 Search for AOIs using hmm models in NZ_NXEM01000026.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000026.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000026.1 Define the AOI areas in NZ_NXEM01000026.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000026.1/NZ_NXEM01000026.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000024.1 Search for AOIs using hmm models in NZ_NXEM01000024.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000024.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000024.1 Define the AOI areas in NZ_NXEM01000024.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000024.1/NZ_NXEM01000024.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000023.1 Search for AOIs using hmm models in NZ_NXEM01000023.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000023.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000023.1 Define the AOI areas in NZ_NXEM01000023.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000023.1 Translate to six frames: NZ_NXEM01000021.1 Search for AOIs using hmm models in NZ_NXEM01000021.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000021.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000021.1 Define the AOI areas in NZ_NXEM01000021.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000021.1/NZ_NXEM01000021.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000028.1 Search for AOIs using hmm models in NZ_NXEM01000028.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000028.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000028.1 Define the AOI areas in NZ_NXEM01000028.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000028.1 Translate to six frames: NZ_NXEM01000020.1 Search for AOIs using hmm models in NZ_NXEM01000020.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000020.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000020.1 Define the AOI areas in NZ_NXEM01000020.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000020.1 Analyzing: GCF_002811125.1_ASM281112v1_genomic.fna Translate to six frames: NZ_NXEM01000029.1 Search for AOIs using hmm models in NZ_NXEM01000029.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000029.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000029.1 Define the AOI areas in NZ_NXEM01000029.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000029.1/NZ_NXEM01000029.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000019.1 Search for AOIs using hmm models in NZ_NXEM01000019.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000019.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000019.1 Define the AOI areas in NZ_NXEM01000019.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000019.1 Translate to six frames: NZ_NXEM01000022.1 Search for AOIs using hmm models in NZ_NXEM01000022.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000022.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000022.1 Define the AOI areas in NZ_NXEM01000022.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000022.1 Translate to six frames: NZ_NXEM01000016.1 Search for AOIs using hmm models in NZ_NXEM01000016.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000016.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000016.1 Define the AOI areas in NZ_NXEM01000016.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000016.1 Translate to six frames: NZ_NXEM01000015.1 Search for AOIs using hmm models in NZ_NXEM01000015.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000015.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000015.1 Define the AOI areas in NZ_NXEM01000015.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000015.1 Translate to six frames: NZ_NXEM01000003.1 Search for AOIs using hmm models in NZ_NXEM01000003.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000003.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000003.1 Define the AOI areas in NZ_NXEM01000003.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000003.1 Translate to six frames: NZ_NXEM01000002.1 Search for AOIs using hmm models in NZ_NXEM01000002.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000002.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000002.1 Define the AOI areas in NZ_NXEM01000002.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000002.1 Translate to six frames: NZ_NXEM01000017.1 Search for AOIs using hmm models in NZ_NXEM01000017.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000017.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000017.1 Define the AOI areas in NZ_NXEM01000017.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000017.1 Translate to six frames: NZ_NXEM01000001.1 Search for AOIs using hmm models in NZ_NXEM01000001.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000001.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000001.1 Define the AOI areas in NZ_NXEM01000001.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000001.1 Translate to six frames: NZ_NXEM01000006.1 Search for AOIs using hmm models in NZ_NXEM01000006.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000006.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000006.1 Define the AOI areas in NZ_NXEM01000006.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000006.1 Translate to six frames: NZ_NXEM01000008.1 Search for AOIs using hmm models in NZ_NXEM01000008.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000008.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000027.1 Search for AOIs using hmm models in NZ_NXEM01000027.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000027.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000027.1 Define the AOI areas in NZ_NXEM01000027.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000027.1/NZ_NXEM01000027.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000004.1 Search for AOIs using hmm models in NZ_NXEM01000004.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000004.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000005.1 Search for AOIs using hmm models in NZ_NXEM01000005.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000005.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000007.1 Search for AOIs using hmm models in NZ_NXEM01000007.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000007.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000013.1 Search for AOIs using hmm models in NZ_NXEM01000013.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000013.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000014.1 Search for AOIs using hmm models in NZ_NXEM01000014.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000014.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000025.1 Search for AOIs using hmm models in NZ_NXEM01000025.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000025.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000025.1 Define the AOI areas in NZ_NXEM01000025.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000025.1/NZ_NXEM01000025.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000026.1 Search for AOIs using hmm models in NZ_NXEM01000026.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000026.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000026.1 Define the AOI areas in NZ_NXEM01000026.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000026.1/NZ_NXEM01000026.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000024.1 Search for AOIs using hmm models in NZ_NXEM01000024.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000024.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000024.1 Define the AOI areas in NZ_NXEM01000024.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000024.1/NZ_NXEM01000024.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000023.1 Search for AOIs using hmm models in NZ_NXEM01000023.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000023.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000023.1 Define the AOI areas in NZ_NXEM01000023.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000023.1 Translate to six frames: NZ_NXEM01000021.1 Search for AOIs using hmm models in NZ_NXEM01000021.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000021.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000021.1 Define the AOI areas in NZ_NXEM01000021.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000021.1/NZ_NXEM01000021.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000028.1 Search for AOIs using hmm models in NZ_NXEM01000028.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000028.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000028.1 Define the AOI areas in NZ_NXEM01000028.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000028.1 Translate to six frames: NZ_NXEM01000020.1 Search for AOIs using hmm models in NZ_NXEM01000020.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000020.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000020.1 Define the AOI areas in NZ_NXEM01000020.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000020.1 Analyzing: GCF_002811125.1_ASM281112v1_genomic.fna Translate to six frames: NZ_NXEM01000029.1 Search for AOIs using hmm models in NZ_NXEM01000029.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000029.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000029.1 Define the AOI areas in NZ_NXEM01000029.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000029.1/NZ_NXEM01000029.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000019.1 Search for AOIs using hmm models in NZ_NXEM01000019.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000019.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000019.1 Define the AOI areas in NZ_NXEM01000019.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000019.1 Translate to six frames: NZ_NXEM01000022.1 Search for AOIs using hmm models in NZ_NXEM01000022.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000022.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000022.1 Define the AOI areas in NZ_NXEM01000022.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000022.1 Translate to six frames: NZ_NXEM01000016.1 Search for AOIs using hmm models in NZ_NXEM01000016.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000016.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000016.1 Define the AOI areas in NZ_NXEM01000016.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000016.1 Translate to six frames: NZ_NXEM01000015.1 Search for AOIs using hmm models in NZ_NXEM01000015.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000015.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000015.1 Define the AOI areas in NZ_NXEM01000015.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000015.1 Translate to six frames: NZ_NXEM01000003.1 Search for AOIs using hmm models in NZ_NXEM01000003.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000003.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000003.1 Define the AOI areas in NZ_NXEM01000003.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000003.1 Translate to six frames: NZ_NXEM01000002.1 Search for AOIs using hmm models in NZ_NXEM01000002.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000002.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000002.1 Define the AOI areas in NZ_NXEM01000002.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000002.1 Translate to six frames: NZ_NXEM01000017.1 Search for AOIs using hmm models in NZ_NXEM01000017.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000017.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000017.1 Define the AOI areas in NZ_NXEM01000017.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000017.1 Translate to six frames: NZ_NXEM01000001.1 Search for AOIs using hmm models in NZ_NXEM01000001.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000001.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000001.1 Define the AOI areas in NZ_NXEM01000001.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000001.1 Translate to six frames: NZ_NXEM01000006.1 Search for AOIs using hmm models in NZ_NXEM01000006.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000006.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000006.1 Define the AOI areas in NZ_NXEM01000006.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000006.1 Translate to six frames: NZ_NXEM01000008.1 Search for AOIs using hmm models in NZ_NXEM01000008.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000008.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000027.1 Search for AOIs using hmm models in NZ_NXEM01000027.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000027.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000027.1 Define the AOI areas in NZ_NXEM01000027.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000027.1/NZ_NXEM01000027.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000004.1 Search for AOIs using hmm models in NZ_NXEM01000004.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000004.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000005.1 Search for AOIs using hmm models in NZ_NXEM01000005.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000005.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000007.1 Search for AOIs using hmm models in NZ_NXEM01000007.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000007.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000013.1 Search for AOIs using hmm models in NZ_NXEM01000013.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000013.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000014.1 Search for AOIs using hmm models in NZ_NXEM01000014.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000014.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000025.1 Search for AOIs using hmm models in NZ_NXEM01000025.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000025.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000025.1 Define the AOI areas in NZ_NXEM01000025.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000025.1/NZ_NXEM01000025.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000026.1 Search for AOIs using hmm models in NZ_NXEM01000026.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000026.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000026.1 Define the AOI areas in NZ_NXEM01000026.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000026.1/NZ_NXEM01000026.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000024.1 Search for AOIs using hmm models in NZ_NXEM01000024.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000024.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000024.1 Define the AOI areas in NZ_NXEM01000024.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000024.1/NZ_NXEM01000024.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000023.1 Search for AOIs using hmm models in NZ_NXEM01000023.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000023.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000023.1 Define the AOI areas in NZ_NXEM01000023.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000023.1 Translate to six frames: NZ_NXEM01000021.1 Search for AOIs using hmm models in NZ_NXEM01000021.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000021.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000021.1 Define the AOI areas in NZ_NXEM01000021.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000021.1/NZ_NXEM01000021.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000028.1 Search for AOIs using hmm models in NZ_NXEM01000028.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000028.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000028.1 Define the AOI areas in NZ_NXEM01000028.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000028.1 Translate to six frames: NZ_NXEM01000020.1 Search for AOIs using hmm models in NZ_NXEM01000020.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000020.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000020.1 Define the AOI areas in NZ_NXEM01000020.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000020.1 Analyzing: GCF_002811125.1_ASM281112v1_genomic.fna Translate to six frames: NZ_NXEM01000029.1 Search for AOIs using hmm models in NZ_NXEM01000029.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000029.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000029.1 Define the AOI areas in NZ_NXEM01000029.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000029.1/NZ_NXEM01000029.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000019.1 Search for AOIs using hmm models in NZ_NXEM01000019.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000019.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000019.1 Define the AOI areas in NZ_NXEM01000019.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000019.1 Translate to six frames: NZ_NXEM01000022.1 Search for AOIs using hmm models in NZ_NXEM01000022.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000022.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000022.1 Define the AOI areas in NZ_NXEM01000022.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000022.1 Translate to six frames: NZ_NXEM01000016.1 Search for AOIs using hmm models in NZ_NXEM01000016.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000016.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000016.1 Define the AOI areas in NZ_NXEM01000016.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000016.1 Translate to six frames: NZ_NXEM01000015.1 Search for AOIs using hmm models in NZ_NXEM01000015.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000015.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000015.1 Define the AOI areas in NZ_NXEM01000015.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000015.1 Translate to six frames: NZ_NXEM01000003.1 Search for AOIs using hmm models in NZ_NXEM01000003.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000003.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000003.1 Define the AOI areas in NZ_NXEM01000003.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000003.1 Translate to six frames: NZ_NXEM01000002.1 Search for AOIs using hmm models in NZ_NXEM01000002.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000002.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000002.1 Define the AOI areas in NZ_NXEM01000002.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000002.1 Translate to six frames: NZ_NXEM01000017.1 Search for AOIs using hmm models in NZ_NXEM01000017.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000017.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000017.1 Define the AOI areas in NZ_NXEM01000017.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000017.1 Translate to six frames: NZ_NXEM01000001.1 Search for AOIs using hmm models in NZ_NXEM01000001.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000001.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000001.1 Define the AOI areas in NZ_NXEM01000001.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000001.1 Translate to six frames: NZ_NXEM01000006.1 Search for AOIs using hmm models in NZ_NXEM01000006.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000006.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000006.1 Define the AOI areas in NZ_NXEM01000006.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000006.1 Translate to six frames: NZ_NXEM01000008.1 Search for AOIs using hmm models in NZ_NXEM01000008.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000008.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000027.1 Search for AOIs using hmm models in NZ_NXEM01000027.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000027.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000027.1 Define the AOI areas in NZ_NXEM01000027.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000027.1/NZ_NXEM01000027.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000004.1 Search for AOIs using hmm models in NZ_NXEM01000004.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000004.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000005.1 Search for AOIs using hmm models in NZ_NXEM01000005.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000005.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000007.1 Search for AOIs using hmm models in NZ_NXEM01000007.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000007.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000013.1 Search for AOIs using hmm models in NZ_NXEM01000013.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000013.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000014.1 Search for AOIs using hmm models in NZ_NXEM01000014.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000014.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000025.1 Search for AOIs using hmm models in NZ_NXEM01000025.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000025.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000025.1 Define the AOI areas in NZ_NXEM01000025.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000025.1/NZ_NXEM01000025.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000026.1 Search for AOIs using hmm models in NZ_NXEM01000026.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000026.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000026.1 Define the AOI areas in NZ_NXEM01000026.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000026.1/NZ_NXEM01000026.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000024.1 Search for AOIs using hmm models in NZ_NXEM01000024.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000024.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000024.1 Define the AOI areas in NZ_NXEM01000024.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000024.1/NZ_NXEM01000024.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000023.1 Search for AOIs using hmm models in NZ_NXEM01000023.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000023.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000023.1 Define the AOI areas in NZ_NXEM01000023.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000023.1 Translate to six frames: NZ_NXEM01000021.1 Search for AOIs using hmm models in NZ_NXEM01000021.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000021.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000021.1 Define the AOI areas in NZ_NXEM01000021.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000021.1/NZ_NXEM01000021.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000028.1 Search for AOIs using hmm models in NZ_NXEM01000028.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000028.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000028.1 Define the AOI areas in NZ_NXEM01000028.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000028.1 Translate to six frames: NZ_NXEM01000020.1 Search for AOIs using hmm models in NZ_NXEM01000020.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000020.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000020.1 Define the AOI areas in NZ_NXEM01000020.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000020.1 Analyzing: GCF_002811125.1_ASM281112v1_genomic.fna Translate to six frames: NZ_NXEM01000029.1 Search for AOIs using hmm models in NZ_NXEM01000029.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000029.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000029.1 Define the AOI areas in NZ_NXEM01000029.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000029.1/NZ_NXEM01000029.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000019.1 Search for AOIs using hmm models in NZ_NXEM01000019.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000019.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000019.1 Define the AOI areas in NZ_NXEM01000019.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000019.1 Translate to six frames: NZ_NXEM01000022.1 Search for AOIs using hmm models in NZ_NXEM01000022.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000022.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000022.1 Define the AOI areas in NZ_NXEM01000022.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000022.1 Translate to six frames: NZ_NXEM01000016.1 Search for AOIs using hmm models in NZ_NXEM01000016.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000016.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000016.1 Define the AOI areas in NZ_NXEM01000016.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000016.1 Translate to six frames: NZ_NXEM01000015.1 Search for AOIs using hmm models in NZ_NXEM01000015.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000015.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000015.1 Define the AOI areas in NZ_NXEM01000015.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000015.1 Translate to six frames: NZ_NXEM01000003.1 Search for AOIs using hmm models in NZ_NXEM01000003.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000003.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000003.1 Define the AOI areas in NZ_NXEM01000003.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000003.1 Translate to six frames: NZ_NXEM01000002.1 Search for AOIs using hmm models in NZ_NXEM01000002.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000002.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000002.1 Define the AOI areas in NZ_NXEM01000002.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000002.1 Translate to six frames: NZ_NXEM01000017.1 Search for AOIs using hmm models in NZ_NXEM01000017.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000017.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000017.1 Define the AOI areas in NZ_NXEM01000017.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000017.1 Translate to six frames: NZ_NXEM01000001.1 Search for AOIs using hmm models in NZ_NXEM01000001.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000001.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000001.1 Define the AOI areas in NZ_NXEM01000001.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000001.1 Translate to six frames: NZ_NXEM01000006.1 Search for AOIs using hmm models in NZ_NXEM01000006.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000006.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000006.1 Define the AOI areas in NZ_NXEM01000006.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000006.1 Translate to six frames: NZ_NXEM01000008.1 Search for AOIs using hmm models in NZ_NXEM01000008.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000008.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000027.1 Analyzing: GCF_002811125.1_ASM281112v1_genomic.fna Translate to six frames: NZ_NXEM01000029.1 Search for AOIs using hmm models in NZ_NXEM01000029.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000029.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000029.1 Define the AOI areas in NZ_NXEM01000029.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000029.1/NZ_NXEM01000029.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000019.1 Search for AOIs using hmm models in NZ_NXEM01000019.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000019.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000019.1 Define the AOI areas in NZ_NXEM01000019.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000019.1 Translate to six frames: NZ_NXEM01000022.1 Search for AOIs using hmm models in NZ_NXEM01000022.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000022.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000022.1 Define the AOI areas in NZ_NXEM01000022.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000022.1 Translate to six frames: NZ_NXEM01000016.1 Search for AOIs using hmm models in NZ_NXEM01000016.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000016.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000016.1 Define the AOI areas in NZ_NXEM01000016.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000016.1 Translate to six frames: NZ_NXEM01000015.1 Search for AOIs using hmm models in NZ_NXEM01000015.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000015.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000015.1 Define the AOI areas in NZ_NXEM01000015.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000015.1 Translate to six frames: NZ_NXEM01000003.1 Search for AOIs using hmm models in NZ_NXEM01000003.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000003.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000003.1 Define the AOI areas in NZ_NXEM01000003.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000003.1 Translate to six frames: NZ_NXEM01000002.1 Search for AOIs using hmm models in NZ_NXEM01000002.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000002.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000002.1 Define the AOI areas in NZ_NXEM01000002.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000002.1 Translate to six frames: NZ_NXEM01000017.1 Search for AOIs using hmm models in NZ_NXEM01000017.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000017.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000017.1 Define the AOI areas in NZ_NXEM01000017.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000017.1 Translate to six frames: NZ_NXEM01000001.1 Search for AOIs using hmm models in NZ_NXEM01000001.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000001.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000001.1 Define the AOI areas in NZ_NXEM01000001.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000001.1 Translate to six frames: NZ_NXEM01000006.1 Search for AOIs using hmm models in NZ_NXEM01000006.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000006.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000006.1 Define the AOI areas in NZ_NXEM01000006.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000006.1 Translate to six frames: NZ_NXEM01000008.1 Search for AOIs using hmm models in NZ_NXEM01000008.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000008.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000027.1 Search for AOIs using hmm models in NZ_NXEM01000027.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000027.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000027.1 Define the AOI areas in NZ_NXEM01000027.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000027.1/NZ_NXEM01000027.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000004.1 Search for AOIs using hmm models in NZ_NXEM01000004.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000004.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000005.1 Search for AOIs using hmm models in NZ_NXEM01000005.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000005.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000007.1 Search for AOIs using hmm models in NZ_NXEM01000007.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000007.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000013.1 Search for AOIs using hmm models in NZ_NXEM01000013.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000013.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000014.1 Search for AOIs using hmm models in NZ_NXEM01000014.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000014.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000025.1 Search for AOIs using hmm models in NZ_NXEM01000025.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000025.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000025.1 Define the AOI areas in NZ_NXEM01000025.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000025.1/NZ_NXEM01000025.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000026.1 Search for AOIs using hmm models in NZ_NXEM01000026.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000026.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000026.1 Define the AOI areas in NZ_NXEM01000026.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000026.1/NZ_NXEM01000026.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000024.1 Search for AOIs using hmm models in NZ_NXEM01000024.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000024.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000024.1 Define the AOI areas in NZ_NXEM01000024.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000024.1/NZ_NXEM01000024.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000023.1 Search for AOIs using hmm models in NZ_NXEM01000023.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000023.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000023.1 Define the AOI areas in NZ_NXEM01000023.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000023.1 Translate to six frames: NZ_NXEM01000021.1 Search for AOIs using hmm models in NZ_NXEM01000021.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000021.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000021.1 Define the AOI areas in NZ_NXEM01000021.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000021.1/NZ_NXEM01000021.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000028.1 Search for AOIs using hmm models in NZ_NXEM01000028.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000028.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000028.1 Define the AOI areas in NZ_NXEM01000028.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000028.1 Translate to six frames: NZ_NXEM01000020.1 Search for AOIs using hmm models in NZ_NXEM01000020.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000020.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000020.1 Define the AOI areas in NZ_NXEM01000020.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000020.1 Analyzing: GCF_002811125.1_ASM281112v1_genomic.fna Translate to six frames: NZ_NXEM01000029.1 Search for AOIs using hmm models in NZ_NXEM01000029.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000029.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000029.1 Define the AOI areas in NZ_NXEM01000029.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000029.1/NZ_NXEM01000029.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000019.1 Search for AOIs using hmm models in NZ_NXEM01000019.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000019.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000019.1 Define the AOI areas in NZ_NXEM01000019.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000019.1 Translate to six frames: NZ_NXEM01000022.1 Search for AOIs using hmm models in NZ_NXEM01000022.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000022.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000022.1 Define the AOI areas in NZ_NXEM01000022.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000022.1 Translate to six frames: NZ_NXEM01000016.1 Search for AOIs using hmm models in NZ_NXEM01000016.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000016.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000016.1 Define the AOI areas in NZ_NXEM01000016.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000016.1 Translate to six frames: NZ_NXEM01000015.1 Search for AOIs using hmm models in NZ_NXEM01000015.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000015.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000015.1 Define the AOI areas in NZ_NXEM01000015.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000015.1 Translate to six frames: NZ_NXEM01000003.1 Search for AOIs using hmm models in NZ_NXEM01000003.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000003.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000003.1 Define the AOI areas in NZ_NXEM01000003.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000003.1 Translate to six frames: NZ_NXEM01000002.1 Search for AOIs using hmm models in NZ_NXEM01000002.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000002.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000002.1 Define the AOI areas in NZ_NXEM01000002.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000002.1 Translate to six frames: NZ_NXEM01000017.1 Search for AOIs using hmm models in NZ_NXEM01000017.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000017.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000017.1 Define the AOI areas in NZ_NXEM01000017.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000017.1 Translate to six frames: NZ_NXEM01000001.1 Search for AOIs using hmm models in NZ_NXEM01000001.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000001.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000001.1 Define the AOI areas in NZ_NXEM01000001.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000001.1 Translate to six frames: NZ_NXEM01000006.1 Search for AOIs using hmm models in NZ_NXEM01000006.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000006.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000006.1 Define the AOI areas in NZ_NXEM01000006.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000006.1 Translate to six frames: NZ_NXEM01000008.1 Search for AOIs using hmm models in NZ_NXEM01000008.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000008.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000027.1 Search for AOIs using hmm models in NZ_NXEM01000027.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000027.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000027.1 Define the AOI areas in NZ_NXEM01000027.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000027.1/NZ_NXEM01000027.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000004.1 Search for AOIs using hmm models in NZ_NXEM01000004.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000004.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000005.1 Search for AOIs using hmm models in NZ_NXEM01000005.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000005.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000007.1 Search for AOIs using hmm models in NZ_NXEM01000007.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000007.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000013.1 Search for AOIs using hmm models in NZ_NXEM01000013.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000013.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000014.1 Search for AOIs using hmm models in NZ_NXEM01000014.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000014.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000025.1 Search for AOIs using hmm models in NZ_NXEM01000025.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000025.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000025.1 Define the AOI areas in NZ_NXEM01000025.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000025.1/NZ_NXEM01000025.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000026.1 Search for AOIs using hmm models in NZ_NXEM01000026.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000026.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000026.1 Define the AOI areas in NZ_NXEM01000026.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000026.1/NZ_NXEM01000026.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000024.1 Search for AOIs using hmm models in NZ_NXEM01000024.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000024.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000024.1 Define the AOI areas in NZ_NXEM01000024.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000024.1/NZ_NXEM01000024.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000023.1 Search for AOIs using hmm models in NZ_NXEM01000023.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000023.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000023.1 Define the AOI areas in NZ_NXEM01000023.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000023.1 Translate to six frames: NZ_NXEM01000021.1 Search for AOIs using hmm models in NZ_NXEM01000021.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000021.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000021.1 Define the AOI areas in NZ_NXEM01000021.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000021.1/NZ_NXEM01000021.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000028.1 Search for AOIs using hmm models in NZ_NXEM01000028.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000028.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000028.1 Define the AOI areas in NZ_NXEM01000028.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000028.1 Translate to six frames: NZ_NXEM01000020.1 Search for AOIs using hmm models in NZ_NXEM01000020.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000020.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000020.1 Define the AOI areas in NZ_NXEM01000020.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000020.1 Analyzing: GCF_002811125.1_ASM281112v1_genomic.fna Translate to six frames: NZ_NXEM01000029.1 Search for AOIs using hmm models in NZ_NXEM01000029.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000029.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000029.1 Define the AOI areas in NZ_NXEM01000029.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000029.1/NZ_NXEM01000029.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000019.1 Search for AOIs using hmm models in NZ_NXEM01000019.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000019.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000019.1 Define the AOI areas in NZ_NXEM01000019.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000019.1 Translate to six frames: NZ_NXEM01000022.1 Search for AOIs using hmm models in NZ_NXEM01000022.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000022.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000022.1 Define the AOI areas in NZ_NXEM01000022.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000022.1 Translate to six frames: NZ_NXEM01000016.1 Search for AOIs using hmm models in NZ_NXEM01000016.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000016.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000016.1 Define the AOI areas in NZ_NXEM01000016.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000016.1 Translate to six frames: NZ_NXEM01000015.1 Search for AOIs using hmm models in NZ_NXEM01000015.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000015.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000015.1 Define the AOI areas in NZ_NXEM01000015.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000015.1 Translate to six frames: NZ_NXEM01000003.1 Search for AOIs using hmm models in NZ_NXEM01000003.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000003.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000003.1 Define the AOI areas in NZ_NXEM01000003.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000003.1 Translate to six frames: NZ_NXEM01000002.1 Search for AOIs using hmm models in NZ_NXEM01000002.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000002.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000002.1 Define the AOI areas in NZ_NXEM01000002.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000002.1 Translate to six frames: NZ_NXEM01000017.1 Search for AOIs using hmm models in NZ_NXEM01000017.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000017.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000017.1 Define the AOI areas in NZ_NXEM01000017.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000017.1 Translate to six frames: NZ_NXEM01000001.1 Search for AOIs using hmm models in NZ_NXEM01000001.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000001.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000001.1 Define the AOI areas in NZ_NXEM01000001.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000001.1 Translate to six frames: NZ_NXEM01000006.1 Search for AOIs using hmm models in NZ_NXEM01000006.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000006.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000006.1 Define the AOI areas in NZ_NXEM01000006.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000006.1 Translate to six frames: NZ_NXEM01000008.1 Search for AOIs using hmm models in NZ_NXEM01000008.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000008.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000027.1 Search for AOIs using hmm models in NZ_NXEM01000027.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000027.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000027.1 Define the AOI areas in NZ_NXEM01000027.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000027.1/NZ_NXEM01000027.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000004.1 Search for AOIs using hmm models in NZ_NXEM01000004.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000004.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000005.1 Search for AOIs using hmm models in NZ_NXEM01000005.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000005.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000007.1 Search for AOIs using hmm models in NZ_NXEM01000007.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000007.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000013.1 Search for AOIs using hmm models in NZ_NXEM01000013.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000013.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000014.1 Search for AOIs using hmm models in NZ_NXEM01000014.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000014.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000025.1 Search for AOIs using hmm models in NZ_NXEM01000025.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000025.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000025.1 Define the AOI areas in NZ_NXEM01000025.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000025.1/NZ_NXEM01000025.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000026.1 Search for AOIs using hmm models in NZ_NXEM01000026.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000026.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000026.1 Define the AOI areas in NZ_NXEM01000026.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000026.1/NZ_NXEM01000026.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000024.1 Search for AOIs using hmm models in NZ_NXEM01000024.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000024.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000024.1 Define the AOI areas in NZ_NXEM01000024.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000024.1/NZ_NXEM01000024.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000023.1 Search for AOIs using hmm models in NZ_NXEM01000023.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000023.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000023.1 Define the AOI areas in NZ_NXEM01000023.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000023.1 Translate to six frames: NZ_NXEM01000021.1 Search for AOIs using hmm models in NZ_NXEM01000021.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000021.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000021.1 Define the AOI areas in NZ_NXEM01000021.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000021.1/NZ_NXEM01000021.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000028.1 Search for AOIs using hmm models in NZ_NXEM01000028.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000028.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000028.1 Define the AOI areas in NZ_NXEM01000028.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000028.1 Translate to six frames: NZ_NXEM01000020.1 Search for AOIs using hmm models in NZ_NXEM01000020.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000020.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000020.1 Define the AOI areas in NZ_NXEM01000020.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000020.1 Analyzing: GCF_002811125.1_ASM281112v1_genomic.fna Translate to six frames: NZ_NXEM01000029.1 Search for AOIs using hmm models in NZ_NXEM01000029.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000029.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000029.1 Define the AOI areas in NZ_NXEM01000029.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000029.1/NZ_NXEM01000029.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000019.1 Search for AOIs using hmm models in NZ_NXEM01000019.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000019.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000019.1 Define the AOI areas in NZ_NXEM01000019.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000019.1 Translate to six frames: NZ_NXEM01000022.1 Search for AOIs using hmm models in NZ_NXEM01000022.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000022.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000022.1 Define the AOI areas in NZ_NXEM01000022.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000022.1 Translate to six frames: NZ_NXEM01000016.1 Search for AOIs using hmm models in NZ_NXEM01000016.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000016.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000016.1 Define the AOI areas in NZ_NXEM01000016.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000016.1 Translate to six frames: NZ_NXEM01000015.1 Search for AOIs using hmm models in NZ_NXEM01000015.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000015.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000015.1 Define the AOI areas in NZ_NXEM01000015.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000015.1 Translate to six frames: NZ_NXEM01000003.1 Search for AOIs using hmm models in NZ_NXEM01000003.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000003.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000003.1 Define the AOI areas in NZ_NXEM01000003.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000003.1 Translate to six frames: NZ_NXEM01000002.1 Search for AOIs using hmm models in NZ_NXEM01000002.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000002.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000002.1 Define the AOI areas in NZ_NXEM01000002.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000002.1 Translate to six frames: NZ_NXEM01000017.1 Search for AOIs using hmm models in NZ_NXEM01000017.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000017.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000017.1 Define the AOI areas in NZ_NXEM01000017.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000017.1 Translate to six frames: NZ_NXEM01000001.1 Search for AOIs using hmm models in NZ_NXEM01000001.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000001.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000001.1 Define the AOI areas in NZ_NXEM01000001.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000001.1 Translate to six frames: NZ_NXEM01000006.1 Search for AOIs using hmm models in NZ_NXEM01000006.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000006.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000006.1 Define the AOI areas in NZ_NXEM01000006.1 No Blast or HMM hits when Annotating AOI NZ_NXEM01000006.1 Translate to six frames: NZ_NXEM01000008.1 Search for AOIs using hmm models in NZ_NXEM01000008.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000008.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000027.1 Search for AOIs using hmm models in NZ_NXEM01000027.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000027.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000027.1 Define the AOI areas in NZ_NXEM01000027.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000027.1/NZ_NXEM01000027.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000004.1 Search for AOIs using hmm models in NZ_NXEM01000004.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000004.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000005.1 Search for AOIs using hmm models in NZ_NXEM01000005.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000005.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000007.1 Search for AOIs using hmm models in NZ_NXEM01000007.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000007.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000013.1 Search for AOIs using hmm models in NZ_NXEM01000013.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000013.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000014.1 Search for AOIs using hmm models in NZ_NXEM01000014.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000014.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Translate to six frames: NZ_NXEM01000025.1 Search for AOIs using hmm models in NZ_NXEM01000025.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000025.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000025.1 Define the AOI areas in NZ_NXEM01000025.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000025.1/NZ_NXEM01000025.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000026.1 Search for AOIs using hmm models in NZ_NXEM01000026.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000026.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000026.1 Define the AOI areas in NZ_NXEM01000026.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000026.1/NZ_NXEM01000026.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000024.1 Search for AOIs using hmm models in NZ_NXEM01000024.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000024.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000024.1 Define the AOI areas in NZ_NXEM01000024.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000024.1/NZ_NXEM01000024.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000023.1 Search for AOIs using hmm models in NZ_NXEM01000023.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000023.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000023.1 Define the AOI areas in NZ_NXEM01000023.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000023.1 Translate to six frames: NZ_NXEM01000021.1 Search for AOIs using hmm models in NZ_NXEM01000021.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000021.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000021.1 Define the AOI areas in NZ_NXEM01000021.1 Apply AOI filtering rules Write all AOI dna sequences to /data/www/users/vicky/bagel5_discovery/Epipeptide/GCF_002811125.1_ASM281112v1_genomic/NZ_NXEM01000021.1/NZ_NXEM01000021.1__AOI.fna Gene Prediction using Prodigal Small ORF Prediction using BAGEL5 sORF prediction Merge Prodigal and sORF predictions Annotation of proteins: DIAMOND UniProt Annotation of Core Peptides: hmmsearch bagel5_CorePeptidesHMM Annotation of Core Peptides: Blastp core peptides Experimentally described BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa BlastP: bagel5_RRE_db.faa Annotation of Context Proteins: hmmsearch using bagel5_ContextHMM Merge all Annotations of AOI proteins Add peptide sequences Check for Cys and SerThr content of the peptide Translate to six frames: NZ_NXEM01000028.1 Search for AOIs using hmm models in NZ_NXEM01000028.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000028.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000028.1 Define the AOI areas in NZ_NXEM01000028.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000028.1 Translate to six frames: NZ_NXEM01000020.1 Search for AOIs using hmm models in NZ_NXEM01000020.1 Search for AOIs using Blastp bacteriocin proteins in NZ_NXEM01000020.1 BlastP: bagel5_class12_bacteriocins_db.faa BlastP: bagel5_class12_putative_bacteriocins_db.faa BlastP: bagel5_class3_bacteriocins_db.faa Processing AOIs of NZ_NXEM01000020.1 Define the AOI areas in NZ_NXEM01000020.1 Apply AOI filtering rules No hits after applying AOI rules NZ_NXEM01000020.1