locus_tag chrom type start end strand product gene CoreName CoreHMM CoreBlast ContextName ContextHMM AOI_1_1 NZ_CP040500.1_AOI_1 gene 3 1142 + Leucine--tRNA ligase leuS AOI_1_2 NZ_CP040500.1_AOI_1 gene 1244 2902 + Lipid II flippase MurJ murJ AOI_1_3 NZ_CP040500.1_AOI_1 gene 3010 4143 + AOI_1_4 NZ_CP040500.1_AOI_1 gene 4215 4961 + AOI_1_5 NZ_CP040500.1_AOI_1 gene 5007 5852 + ADP-dependent (S)-NAD(P)H-hydrate dehydratase nnrD AOI_1_6 NZ_CP040500.1_AOI_1 gene 5858 6535 + Putative L,D-transpeptidase YciB yciB AOI_1_7 NZ_CP040500.1_AOI_1 gene 6572 7498 + D-alanyl-D-alanine carboxypeptidase DacA dacA AOI_1_sORF_0001 NZ_CP040500.1_AOI_1 sORF 7506 7698 - AOI_1_8 NZ_CP040500.1_AOI_1 gene 7761 9455 + Arginine--tRNA ligase argS AOI_1_9 NZ_CP040500.1_AOI_1 gene 9567 10484 + Fructose-bisphosphate aldolase fba AOI_1_10 NZ_CP040500.1_AOI_1 gene 10554 10871 + AOI_1_11 NZ_CP040500.1_AOI_1 gene 10921 11361 + Probable GMP synthase [glutamine-hydrolyzing] guaA AOI_1_12 NZ_CP040500.1_AOI_1 gene 11376 11708 + AOI_1_13 NZ_CP040500.1_AOI_1 gene 11796 11903 - AOI_1_14 NZ_CP040500.1_AOI_1 gene 12145 12681 + Bifunctional protein TilS/HprT tilS/hprT AOI_1_15 NZ_CP040500.1_AOI_1 gene 12693 13361 + AOI_1_16 NZ_CP040500.1_AOI_1 gene 13430 14050 + AOI_1_17 NZ_CP040500.1_AOI_1 gene 14109 14567 - Protein YtsP ytsP AOI_1_18 NZ_CP040500.1_AOI_1 gene 14776 15771 + Bacteriocin helveticin-J hlv Helveticin_J PF17312.6 3.47 AOI_1_19 NZ_CP040500.1_AOI_1 gene 15834 16400 + Probable GMP synthase [glutamine-hydrolyzing] guaA AOI_1_20 NZ_CP040500.1_AOI_1 gene 16400 17338 + AOI_1_21 NZ_CP040500.1_AOI_1 gene 17360 18142 + AOI_1_22 NZ_CP040500.1_AOI_1 gene 18182 18937 - Glycerol uptake facilitator protein-like 5 glpF5 AOI_1_23 NZ_CP040500.1_AOI_1 gene 19139 20617 + Multidrug resistance protein 3 bmr3 AOI_1_24 NZ_CP040500.1_AOI_1 gene 20723 21214 + Uncharacterized MFS-type transporter YfiU yfiU AOI_1_25 NZ_CP040500.1_AOI_1 gene 21252 22163 + Multidrug resistance protein 3 bmr3 AOI_1_26 NZ_CP040500.1_AOI_1 gene 22419 24005 + Lactococcin-A transport/processing ATP-binding protein LcnC lcnC ABC_tran PF00005.31 AOI_1_26 NZ_CP040500.1_AOI_1 gene 22419 24005 + Lactococcin-A transport/processing ATP-binding protein LcnC lcnC galliderm_ABC TIGR03740.1 AOI_1_26 NZ_CP040500.1_AOI_1 gene 22419 24005 + Lactococcin-A transport/processing ATP-binding protein LcnC lcnC galliderm_ABC TIGR03740.1 AOI_1_27 NZ_CP040500.1_AOI_1 gene 24012 25583 + Lactococcin-A transport/processing ATP-binding protein LcnC lcnC ABC_tran PF00005.31 AOI_1_27 NZ_CP040500.1_AOI_1 gene 24012 25583 + Lactococcin-A transport/processing ATP-binding protein LcnC lcnC galliderm_ABC TIGR03740.1 AOI_1_27 NZ_CP040500.1_AOI_1 gene 24012 25583 + Lactococcin-A transport/processing ATP-binding protein LcnC lcnC galliderm_ABC TIGR03740.1 AOI_1_28 NZ_CP040500.1_AOI_1 gene 25792 26055 - AOI_1_29 NZ_CP040500.1_AOI_1 gene 26277 26597 - AOI_1_30 NZ_CP040500.1_AOI_1 gene 26627 27934 + Oleate hydratase ohyA AOI_1_31 NZ_CP040500.1_AOI_1 gene 28182 28610 + AOI_1_32 NZ_CP040500.1_AOI_1 gene 28750 29538 - Sugar phosphatase YbiV ybiV AOI_1_33 NZ_CP040500.1_AOI_1 gene 29564 30370 - Putative phosphatase YxeH yxeH AOI_1_34 NZ_CP040500.1_AOI_1 gene 30476 31312 + Anthranilate 1,2-dioxygenase regulatory protein andR AOI_1_35 NZ_CP040500.1_AOI_1 gene 31284 31613 + AOI_1_36 NZ_CP040500.1_AOI_1 gene 31664 32995 - Uracil permease pyrP AOI_1_37 NZ_CP040500.1_AOI_1 gene 33414 34178 + Lactose phosphotransferase system repressor lacR AOI_1_38 NZ_CP040500.1_AOI_1 gene 34194 34622 + Galactose-6-phosphate isomerase subunit LacA lacA AOI_1_39 NZ_CP040500.1_AOI_1 gene 34636 35211 + Galactose-6-phosphate isomerase subunit LacB lacB AOI_1_40 NZ_CP040500.1_AOI_1 gene 35230 35910 + AOI_1_41 NZ_CP040500.1_AOI_1 gene 36151 36642 + AOI_1_42 NZ_CP040500.1_AOI_1 gene 36670 36984 + AOI_1_43 NZ_CP040500.1_AOI_1 gene 37009 38427 + AOI_1_44 NZ_CP040500.1_AOI_1 gene 38465 38713 + AOI_1_45 NZ_CP040500.1_AOI_1 gene 39017 39856 + Transcription antiterminator LacT lacT AOI_1_46 NZ_CP040500.1_AOI_1 gene 39869 39967 + PTS system lactose-specific EIIA component lacF AOI_2_1 NZ_CP040500.1_AOI_2 gene 2 145 + Uncharacterized ABC transporter ATP-binding protein TM_0288 yrrT AOI_2_2 NZ_CP040500.1_AOI_2 gene 196 1017 + ABC transporter glutamine-binding protein GlnH glnH AOI_2_3 NZ_CP040500.1_AOI_2 gene 1468 2217 + Glutamine transport ATP-binding protein GlnQ glnQ ABC_tran PF00005.31 AOI_2_3 NZ_CP040500.1_AOI_2 gene 1468 2217 + Glutamine transport ATP-binding protein GlnQ glnQ galliderm_ABC TIGR03740.1 AOI_2_3 NZ_CP040500.1_AOI_2 gene 1468 2217 + Glutamine transport ATP-binding protein GlnQ glnQ galliderm_ABC TIGR03740.1 AOI_2_4 NZ_CP040500.1_AOI_2 gene 2219 3043 + ABC transporter glutamine-binding protein GlnH glnH AOI_2_5 NZ_CP040500.1_AOI_2 gene 3040 3678 + Probable glutamine ABC transporter permease protein GlnM glnM AOI_2_6 NZ_CP040500.1_AOI_2 gene 3692 4342 + Probable glutamine ABC transporter permease protein GlnP glnP AOI_2_7 NZ_CP040500.1_AOI_2 gene 4389 4691 - AOI_2_8 NZ_CP040500.1_AOI_2 gene 4905 6563 - Trehalose-6-phosphate hydrolase treA AOI_2_9 NZ_CP040500.1_AOI_2 gene 6577 7302 - HTH-type transcriptional regulator TreR treR AOI_2_10 NZ_CP040500.1_AOI_2 gene 7461 9425 + PTS system beta-glucoside-specific EIIBCA component bglP AOI_2_11 NZ_CP040500.1_AOI_2 gene 9568 10362 + AOI_2_12 NZ_CP040500.1_AOI_2 gene 10403 11143 - Uridine kinase udk ABC_tran PF00005.31 AOI_2_13 NZ_CP040500.1_AOI_2 gene 11200 12567 + AOI_2_14 NZ_CP040500.1_AOI_2 gene 12710 12862 + GG_sam_targ_CFB TIGR04149.1 AOI_2_15 NZ_CP040500.1_AOI_2 gene 12865 13743 + AOI_2_16 NZ_CP040500.1_AOI_2 gene 13754 14173 + AOI_2_17 NZ_CP040500.1_AOI_2 gene 14170 14967 + Sensory transduction protein LytR lytR Response_reg PF00072.28 AOI_2_18 NZ_CP040500.1_AOI_2 gene 14980 17139 + Transport/processing ATP-binding protein ComA comA Peptidase_C39 PF03412.19 AOI_2_18 NZ_CP040500.1_AOI_2 gene 14980 17139 + Transport/processing ATP-binding protein ComA comA ABC_tran PF00005.31 AOI_2_18 NZ_CP040500.1_AOI_2 gene 14980 17139 + Transport/processing ATP-binding protein ComA comA galliderm_ABC TIGR03740.1 AOI_2_18 NZ_CP040500.1_AOI_2 gene 14980 17139 + Transport/processing ATP-binding protein ComA comA galliderm_ABC TIGR03740.1 AOI_2_19 NZ_CP040500.1_AOI_2 gene 17150 17743 + Uncharacterized protein in laf 5'region ykzW HlyD_3 PF13437.10 AOI_2_20 NZ_CP040500.1_AOI_2 gene 18045 18272 + Bacteriocin lactacin-F subunit LafA lafA ComC PF03047.18 2.2.023 AOI_2_20 NZ_CP040500.1_AOI_2 gene 18045 18272 + Bacteriocin lactacin-F subunit LafA lafA ComC PF03047.18 Putative.2.6 AOI_2_20 NZ_CP040500.1_AOI_2 gene 18045 18272 + Bacteriocin lactacin-F subunit LafA lafA Bacteriocin_IIc PF10439.13 2.2.023 AOI_2_20 NZ_CP040500.1_AOI_2 gene 18045 18272 + Bacteriocin lactacin-F subunit LafA lafA Bacteriocin_IIc PF10439.13 Putative.2.6 AOI_2_20 NZ_CP040500.1_AOI_2 gene 18045 18272 + Bacteriocin lactacin-F subunit LafA lafA bacteriocin_sig TIGR01847.1 2.2.023 AOI_2_20 NZ_CP040500.1_AOI_2 gene 18045 18272 + Bacteriocin lactacin-F subunit LafA lafA bacteriocin_sig TIGR01847.1 Putative.2.6 AOI_2_21 NZ_CP040500.1_AOI_2 gene 18282 18479 + Bacteriocin lactacin-F subunit LafX lafX Bacteriocin_IIc PF10439.13 2.2.024 AOI_2_21 NZ_CP040500.1_AOI_2 gene 18282 18479 + Bacteriocin lactacin-F subunit LafX lafX bacteriocin_sig TIGR01847.1 2.2.024 AOI_2_21 NZ_CP040500.1_AOI_2 gene 18282 18479 + Bacteriocin lactacin-F subunit LafX lafX GG_sam_targ_CFB TIGR04149.1 2.2.024 AOI_2_22 NZ_CP040500.1_AOI_2 gene 18495 18833 + AOI_2_23 NZ_CP040500.1_AOI_2 gene 19272 19376 + AOI_2_24 NZ_CP040500.1_AOI_2 gene 19555 19839 + EntA_Immun PF08951.14 AOI_2_25 NZ_CP040500.1_AOI_2 gene 19995 20192 + AOI_2_26 NZ_CP040500.1_AOI_2 gene 20206 20436 + AOI_2_27 NZ_CP040500.1_AOI_2 gene 20620 20934 + EntA_Immun PF08951.14 AOI_2_28 NZ_CP040500.1_AOI_2 gene 21070 23871 + Calcium-transporting ATPase yloB AOI_2_29 NZ_CP040500.1_AOI_2 gene 23944 24792 + Uncharacterized protein YjjU yjjU AOI_2_30 NZ_CP040500.1_AOI_2 gene 24894 26390 + Arginine-binding extracellular protein ArtP artP AOI_2_31 NZ_CP040500.1_AOI_2 gene 26374 27108 + Arginine transport ATP-binding protein ArtM artM ABC_tran PF00005.31 AOI_2_31 NZ_CP040500.1_AOI_2 gene 26374 27108 + Arginine transport ATP-binding protein ArtM artM galliderm_ABC TIGR03740.1 AOI_2_31 NZ_CP040500.1_AOI_2 gene 26374 27108 + Arginine transport ATP-binding protein ArtM artM galliderm_ABC TIGR03740.1 AOI_2_32 NZ_CP040500.1_AOI_2 gene 27208 27729 + AOI_2_33 NZ_CP040500.1_AOI_2 gene 27775 28716 + Phosphate-binding protein PstS 1 pstS1 AOI_2_34 NZ_CP040500.1_AOI_2 gene 28733 29725 + Probable ABC transporter permease protein YqgH yqgH AOI_2_35 NZ_CP040500.1_AOI_2 gene 29725 30615 + Probable ABC transporter permease protein YqgI yqgI AOI_2_36 NZ_CP040500.1_AOI_2 gene 30626 31426 + Phosphate import ATP-binding protein PstB 1 pstB1 ABC_tran PF00005.31 AOI_2_36 NZ_CP040500.1_AOI_2 gene 30626 31426 + Phosphate import ATP-binding protein PstB 1 pstB1 galliderm_ABC TIGR03740.1 AOI_2_36 NZ_CP040500.1_AOI_2 gene 30626 31426 + Phosphate import ATP-binding protein PstB 1 pstB1 galliderm_ABC TIGR03740.1 AOI_2_37 NZ_CP040500.1_AOI_2 gene 31386 32192 + Phosphate import ATP-binding protein PstB 2 pstB2 ABC_tran PF00005.31 AOI_2_37 NZ_CP040500.1_AOI_2 gene 31386 32192 + Phosphate import ATP-binding protein PstB 2 pstB2 galliderm_ABC TIGR03740.1 AOI_2_37 NZ_CP040500.1_AOI_2 gene 31386 32192 + Phosphate import ATP-binding protein PstB 2 pstB2 galliderm_ABC TIGR03740.1 AOI_2_38 NZ_CP040500.1_AOI_2 gene 32210 32893 + Phosphate-specific transport system accessory protein PhoU homolog phoU AOI_2_39 NZ_CP040500.1_AOI_2 gene 33028 34566 + Uncharacterized protein HI_0594 metK1 AOI_2_40 NZ_CP040500.1_AOI_2 gene 34647 35114 + DNA protection during starvation protein dps AOI_2_41 NZ_CP040500.1_AOI_2 gene 35216 35578 + AOI_2_42 NZ_CP040500.1_AOI_2 gene 35637 36560 + Bifunctional ribokinase/ribose-5-phosphate isomerase A rbsK/rbiA AOI_2_43 NZ_CP040500.1_AOI_2 gene 36564 37262 + Ribose-5-phosphate isomerase A rpiA AOI_2_44 NZ_CP040500.1_AOI_2 gene 37378 38301 + Non-specific ribonucleoside hydrolase RihC rihC AOI_2_45 NZ_CP040500.1_AOI_2 gene 38301 39029 + Arabinose metabolism transcriptional repressor araR AOI_2_46 NZ_CP040500.1_AOI_2 gene 39096 39422 - EntA_Immun PF08951.14 AOI_2_47 NZ_CP040500.1_AOI_2 gene 39686 40465 + HTH-type transcriptional repressor GlcR glcR AOI_2_48 NZ_CP040500.1_AOI_2 gene 40526 42982 + Xylulose-5-phosphate phosphoketolase xpkA AOI_2_49 NZ_CP040500.1_AOI_2 gene 43148 43804 + Nitroreductase NfnB nfnB AOI_2_50 NZ_CP040500.1_AOI_2 gene 43905 44621 + AOI_2_51 NZ_CP040500.1_AOI_2 gene 44672 46051 + UPF0053 protein YqhB yqhB AOI_2_52 NZ_CP040500.1_AOI_2 gene 46149 46460 + Bifunctional protein TilS/HprT tilS/hprT AOI_3_1 NZ_CP040500.1_AOI_3 gene 2 811 + Lipoteichoic acid synthase 2 ltaS2 AOI_3_2 NZ_CP040500.1_AOI_3 gene 939 2369 - Sensor histidine kinase YclK yclK HisKA PF00512.29 AOI_3_2 NZ_CP040500.1_AOI_3 gene 939 2369 - Sensor histidine kinase YclK yclK HATPase_c_2 PF13581.10 AOI_3_3 NZ_CP040500.1_AOI_3 gene 2394 3104 - Uncharacterized transcriptional regulatory protein YclJ yclJ Response_reg PF00072.28 AOI_3_3 NZ_CP040500.1_AOI_3 gene 2394 3104 - Uncharacterized transcriptional regulatory protein YclJ yclJ Trans_reg_C PF00486.32 AOI_3_4 NZ_CP040500.1_AOI_3 gene 3104 3496 - AOI_3_5 NZ_CP040500.1_AOI_3 gene 3521 4486 - Probable mannose-6-phosphate isomerase GmuF gmuF AOI_3_6 NZ_CP040500.1_AOI_3 gene 4543 4788 - AOI_3_7 NZ_CP040500.1_AOI_3 gene 5019 6842 - Inulosucrase inuGB AOI_3_8 NZ_CP040500.1_AOI_3 gene 6932 7405 - Inulosucrase inuGB AOI_3_sORF_0001 NZ_CP040500.1_AOI_3 sORF 7958 8144 - AOI_3_9 NZ_CP040500.1_AOI_3 gene 8176 9123 - Lysozyme lysA AOI_3_10 NZ_CP040500.1_AOI_3 gene 9136 9534 - AOI_3_11 NZ_CP040500.1_AOI_3 gene 9534 9728 - AOI_3_12 NZ_CP040500.1_AOI_3 gene 9721 9963 - AOI_3_13 NZ_CP040500.1_AOI_3 gene 9978 10376 - AOI_3_14 NZ_CP040500.1_AOI_3 gene 10434 10862 - AOI_3_15 NZ_CP040500.1_AOI_3 gene 10882 13398 - AOI_3_16 NZ_CP040500.1_AOI_3 gene 13398 13772 - AOI_3_17 NZ_CP040500.1_AOI_3 gene 13765 16167 - 3.43 AOI_3_18 NZ_CP040500.1_AOI_3 gene 16167 16982 - AOI_3_19 NZ_CP040500.1_AOI_3 gene 16970 20383 - Tape measure protein TMP AOI_3_20 NZ_CP040500.1_AOI_3 gene 20376 20696 - AOI_3_21 NZ_CP040500.1_AOI_3 gene 20744 21130 - AOI_3_22 NZ_CP040500.1_AOI_3 gene 21130 21759 - AOI_3_23 NZ_CP040500.1_AOI_3 gene 21760 22149 - AOI_3_24 NZ_CP040500.1_AOI_3 gene 22146 22520 - AOI_3_25 NZ_CP040500.1_AOI_3 gene 22504 22815 - AOI_3_26 NZ_CP040500.1_AOI_3 gene 22805 23146 - AOI_3_27 NZ_CP040500.1_AOI_3 gene 23161 24069 - AOI_3_28 NZ_CP040500.1_AOI_3 gene 24083 24676 - AOI_3_29 NZ_CP040500.1_AOI_3 gene 24748 24972 - AOI_3_30 NZ_CP040500.1_AOI_3 gene 25050 25736 - AOI_3_31 NZ_CP040500.1_AOI_3 gene 25800 26822 - AOI_3_32 NZ_CP040500.1_AOI_3 gene 26800 28206 - Portal protein 1 AOI_3_33 NZ_CP040500.1_AOI_3 gene 28219 29457 - Terminase, large subunit 17 AOI_3_34 NZ_CP040500.1_AOI_3 gene 29435 29944 - PBSX phage terminase small subunit xtmA