locus_tag chrom type start end strand product gene CoreName CoreHMM CoreBlast ContextName ContextHMM AOI_1_1 NC_010545.1_AOI_1 gene 1 9828 + Linear gramicidin synthase subunit B lgrB AOI_1_2 NC_010545.1_AOI_1 gene 9831 10835 - Iron(III) enterobactin esterase fes AOI_1_3 NC_010545.1_AOI_1 gene 10895 11839 + Bifunctional polymyxin resistance protein ArnA arnA AOI_1_4 NC_010545.1_AOI_1 gene 11905 12921 + Probable siderophore-binding lipoprotein YfiY yfiY AOI_1_5 NC_010545.1_AOI_1 gene 13019 13396 - AOI_1_6 NC_010545.1_AOI_1 gene 13602 14240 + Protein DedA dedA AOI_1_7 NC_010545.1_AOI_1 gene 14251 15087 - Probable siderophore transport system ATP-binding protein YusV yusV ABC_tran PF00005.31 AOI_1_7 NC_010545.1_AOI_1 gene 14251 15087 - Probable siderophore transport system ATP-binding protein YusV yusV galliderm_ABC TIGR03740.1 AOI_1_7 NC_010545.1_AOI_1 gene 14251 15087 - Probable siderophore transport system ATP-binding protein YusV yusV galliderm_ABC TIGR03740.1 AOI_1_8 NC_010545.1_AOI_1 gene 15084 16178 - Ferric enterobactin transport system permease protein FepG fepG AOI_1_9 NC_010545.1_AOI_1 gene 16178 17296 - Ferric enterobactin transport system permease protein FepD fepD AOI_1_10 NC_010545.1_AOI_1 gene 17604 18953 + Probable transposase for insertion sequence element traY AOI_1_11 NC_010545.1_AOI_1 gene 19101 20336 + Uncharacterized MFS-type transporter SACE_5813 metK1 AOI_1_12 NC_010545.1_AOI_1 gene 20489 21742 + Multi-drug resistance efflux pump PmrA homolog pmrA AOI_1_13 NC_010545.1_AOI_1 gene 21946 22875 - AOI_1_14 NC_010545.1_AOI_1 gene 23064 23480 - AOI_1_sORF_0003 NC_010545.1_AOI_1 sORF 23588 23939 - AOI_1_15 NC_010545.1_AOI_1 gene 23968 24339 + 50S ribosomal protein L14 rplN AOI_1_16 NC_010545.1_AOI_1 gene 24340 24651 + 50S ribosomal protein L24 rplX AOI_1_17 NC_010545.1_AOI_1 gene 24654 25235 + 50S ribosomal protein L5 rplE AOI_1_18 NC_010545.1_AOI_1 gene 25439 25927 + AOI_1_19 NC_010545.1_AOI_1 gene 26091 28154 + AOI_1_sORF_0001 NC_010545.1_AOI_1 sORF 28220 28466 + AOI_1_sORF_0002 NC_010545.1_AOI_1 sORF 28249 28522 - AOI_1_20 NC_010545.1_AOI_1 gene 28622 29029 + 30S ribosomal protein S8 rpsH AOI_1_21 NC_010545.1_AOI_1 gene 29048 29584 + 50S ribosomal protein L6 rplF AOI_1_22 NC_010545.1_AOI_1 gene 29584 29994 + 50S ribosomal protein L18 rplR AOI_1_23 NC_010545.1_AOI_1 gene 30035 30676 + 30S ribosomal protein S5 rpsE AOI_1_24 NC_010545.1_AOI_1 gene 30680 30865 + 50S ribosomal protein L30 rpmD AOI_1_25 NC_010545.1_AOI_1 gene 30868 31314 + 50S ribosomal protein L15 rplO AOI_1_26 NC_010545.1_AOI_1 gene 31685 33019 + Protein translocase subunit SecY secY AOI_1_27 NC_010545.1_AOI_1 gene 33016 33561 + Adenylate kinase adk AOI_1_28 NC_010545.1_AOI_1 gene 33724 34518 + Methionine aminopeptidase 1 map-1 AOI_1_29 NC_010545.1_AOI_1 gene 34772 34990 + Translation initiation factor IF-1 infA AOI_1_sORF_0002 NC_010545.1_AOI_1 sORF 35029 35218 + AOI_1_30 NC_010545.1_AOI_1 gene 35229 35597 + 30S ribosomal protein S13 rpsM AOI_1_31 NC_010545.1_AOI_1 gene 35597 36004 + 30S ribosomal protein S11 rpsK AOI_1_32 NC_010545.1_AOI_1 gene 36030 36635 + 30S ribosomal protein S4 rpsD AOI_1_33 NC_010545.1_AOI_1 gene 36749 37762 + DNA-directed RNA polymerase subunit alpha rpoA AOI_1_34 NC_010545.1_AOI_1 gene 37809 38279 + 50S ribosomal protein L17 rplQ AOI_1_35 NC_010545.1_AOI_1 gene 38440 39513 + tRNA pseudouridine synthase A truA AOI_1_36 NC_010545.1_AOI_1 gene 39675 40727 - AOI_1_37 NC_010545.1_AOI_1 gene 40918 42243 + ESX-4 secretion system ATPase EccB4 eccB4 AOI_1_38 NC_010545.1_AOI_1 gene 42114 43442 - Mycosin-1 mycP1 Peptidase_S8 PF00082.26 AOI_1_38 NC_010545.1_AOI_1 gene 42114 43442 - Mycosin-1 mycP1 protease_PatA TIGR03895.1 AOI_1_38 NC_010545.1_AOI_1 gene 42114 43442 - Mycosin-1 mycP1 protease_PatA TIGR03895.1 AOI_1_39 NC_010545.1_AOI_1 gene 43439 44617 - AOI_1_40 NC_010545.1_AOI_1 gene 44900 48385 + ESX-4 secretion system protein EccC4 eccC4 AOI_1_41 NC_010545.1_AOI_1 gene 48385 49821 + AOI_1_42 NC_010545.1_AOI_1 gene 50137 50631 + AOI_1_43 NC_010545.1_AOI_1 gene 50710 51312 + AOI_1_44 NC_010545.1_AOI_1 gene 51437 52222 - AOI_1_sORF_0003 NC_010545.1_AOI_1 sORF 52239 52539 + AOI_1_sORF_0001 NC_010545.1_AOI_1 sORF 52456 52729 - AOI_1_45 NC_010545.1_AOI_1 gene 52739 53023 + ESAT-6-like protein EsxB esxB AOI_1_46 NC_010545.1_AOI_1 gene 53099 53380 + ESAT-6-like protein EsxA esxA AOI_1_47 NC_010545.1_AOI_1 gene 53848 54291 + 50S ribosomal protein L13 rplM AOI_1_48 NC_010545.1_AOI_1 gene 54291 54836 + 30S ribosomal protein S9 rpsI AOI_1_sORF_0004 NC_010545.1_AOI_1 sORF 54921 55179 + AOI_1_49 NC_010545.1_AOI_1 gene 55212 56849 + Thiamine biosynthesis multifunctional protein ThiED thiED AOI_1_50 NC_010545.1_AOI_1 gene 57016 58137 + Phosphoglucosamine mutase glmM AOI_2_1 NC_010545.1_AOI_2 gene 1 1206 + Nuclease SbcCD subunit D sbcD AOI_2_2 NC_010545.1_AOI_2 gene 1219 4113 + Uncharacterized protein Mb1309 radC ABC_tran PF00005.31 AOI_2_3 NC_010545.1_AOI_2 gene 4330 6039 + Arginine--tRNA ligase argS AOI_2_4 NC_010545.1_AOI_2 gene 6052 7440 + Diaminopimelate decarboxylase lysA AOI_2_5 NC_010545.1_AOI_2 gene 7622 8962 + Homoserine dehydrogenase hom AOI_2_6 NC_010545.1_AOI_2 gene 8968 9888 + Homoserine kinase thrB AOI_2_7 NC_010545.1_AOI_2 gene 9904 10956 - Probable adenylyltransferase/sulfurtransferase MoeZ moeZ AOI_2_8 NC_010545.1_AOI_2 gene 11132 11701 + Molybdenum cofactor biosynthesis bifunctional protein moaCB AOI_2_9 NC_010545.1_AOI_2 gene 11721 11984 + AOI_2_10 NC_010545.1_AOI_2 gene 12060 12731 - Molybdenum cofactor guanylyltransferase mobA AOI_2_11 NC_010545.1_AOI_2 gene 12744 14033 - Molybdopterin molybdenumtransferase 2 moaE2 AOI_2_12 NC_010545.1_AOI_2 gene 14035 15078 - GTP 3',8-cyclase moaA Radical_SAM PF04055.25 AOI_2_12 NC_010545.1_AOI_2 gene 14035 15078 - GTP 3',8-cyclase moaA rSAM_yydG TIGR04078.1 AOI_2_13 NC_010545.1_AOI_2 gene 15123 16892 - Long-chain-fatty-acid--CoA ligase lcfB AOI_2_sORF_0001 NC_010545.1_AOI_2 sORF 17048 17312 - AOI_2_sORF_0001 NC_010545.1_AOI_2 sORF 17070 17295 + AOI_2_14 NC_010545.1_AOI_2 gene 17432 19153 + Transcription termination factor Rho rho AOI_2_15 NC_010545.1_AOI_2 gene 19216 20331 + Peptide chain release factor 1 prfA AOI_2_16 NC_010545.1_AOI_2 gene 20332 21330 + Release factor glutamine methyltransferase prmC AOI_2_17 NC_010545.1_AOI_2 gene 21432 22091 + Putative threonylcarbamoyl-AMP synthase tsaC AOI_2_18 NC_010545.1_AOI_2 gene 22107 23288 + Decaprenyl-phosphate N-acetylglucosaminephosphotransferase wecA AOI_2_19 NC_010545.1_AOI_2 gene 23281 23793 + AOI_2_20 NC_010545.1_AOI_2 gene 24142 24942 + ATP synthase subunit a atpB AOI_2_21 NC_010545.1_AOI_2 gene 25043 25285 + ATP synthase subunit c atpE AOI_2_22 NC_010545.1_AOI_2 gene 25433 25993 + ATP synthase subunit b atpF AOI_2_23 NC_010545.1_AOI_2 gene 25999 26817 + ATP synthase subunit delta atpH AOI_2_24 NC_010545.1_AOI_2 gene 26875 28512 + ATP synthase subunit alpha atpA AOI_2_25 NC_010545.1_AOI_2 gene 28577 29554 + ATP synthase gamma chain atpG AOI_2_26 NC_010545.1_AOI_2 gene 29557 31005 + ATP synthase subunit beta atpD AOI_2_27 NC_010545.1_AOI_2 gene 31017 31391 + ATP synthase epsilon chain atpC AOI_2_28 NC_010545.1_AOI_2 gene 31643 32074 + AOI_2_sORF_0002 NC_010545.1_AOI_2 sORF 32119 32305 + AOI_2_29 NC_010545.1_AOI_2 gene 32365 33105 + Endonuclease NucS nucS AOI_2_30 NC_010545.1_AOI_2 gene 33186 34232 + Uncharacterized protein Mb1359 fabG2 AOI_2_31 NC_010545.1_AOI_2 gene 34299 35159 + Putative ABC transporter ATP-binding protein abcX ABC_tran PF00005.31 AOI_2_31 NC_010545.1_AOI_2 gene 34299 35159 + Putative ABC transporter ATP-binding protein abcX galliderm_ABC TIGR03740.1 AOI_2_31 NC_010545.1_AOI_2 gene 34299 35159 + Putative ABC transporter ATP-binding protein abcX galliderm_ABC TIGR03740.1 AOI_2_32 NC_010545.1_AOI_2 gene 35210 36124 + AOI_2_33 NC_010545.1_AOI_2 gene 36132 37403 + Uncharacterized S-adenosylmethionine-dependent methyltransferase MT3122 crtC AOI_2_34 NC_010545.1_AOI_2 gene 37594 38382 + Electron transfer flavoprotein subunit beta etfB AOI_2_35 NC_010545.1_AOI_2 gene 38445 39395 + Electron transfer flavoprotein subunit alpha etfA AOI_2_36 NC_010545.1_AOI_2 gene 39602 40981 + Citrate transporter citN AOI_2_37 NC_010545.1_AOI_2 gene 41012 42199 + Iscs-like cysteine desulfurase iscS AOI_2_38 NC_010545.1_AOI_2 gene 42229 43449 + tRNA-specific 2-thiouridylase MnmA mnmA Asn_synthase PF00733.25 AOI_2_39 NC_010545.1_AOI_2 gene 43446 44504 + AOI_2_40 NC_010545.1_AOI_2 gene 44576 46714 - DNA ligase ligA AOI_2_41 NC_010545.1_AOI_2 gene 46777 47448 + DNA polymerase III subunit epsilon-like protein dnaQ AOI_2_42 NC_010545.1_AOI_2 gene 47473 49008 + L-Threonine dehydratase biosynthetic IlvA ilvA AOI_2_43 NC_010545.1_AOI_2 gene 49135 49365 - AOI_3_1 NC_010545.1_AOI_3 gene 2 529 + AOI_3_2 NC_010545.1_AOI_3 gene 839 2344 - Succinyl-CoA:acetate CoA-transferase sca4 AOI_3_3 NC_010545.1_AOI_3 gene 2580 3758 + Probable tRNA-dihydrouridine synthase dus AOI_3_4 NC_010545.1_AOI_3 gene 3833 4390 - Gluconokinase gcl ABC_tran PF00005.31 AOI_3_5 NC_010545.1_AOI_3 gene 4449 5600 - Phosphate-binding protein PstS3 pstS3 AOI_3_6 NC_010545.1_AOI_3 gene 5653 6672 - Mycothiol acetyltransferase mshD AOI_3_7 NC_010545.1_AOI_3 gene 6785 7681 + AOI_3_8 NC_010545.1_AOI_3 gene 7692 8438 + Ferric nitrobindin-like protein nblA AOI_3_9 NC_010545.1_AOI_3 gene 8451 9341 - AOI_3_10 NC_010545.1_AOI_3 gene 9528 10703 + AOI_3_11 NC_010545.1_AOI_3 gene 10921 11094 + AOI_3_12 NC_010545.1_AOI_3 gene 11373 12512 + AOI_3_13 NC_010545.1_AOI_3 gene 12656 13723 - Phosphoribosylformylglycinamidine cyclo-ligase purM AOI_3_14 NC_010545.1_AOI_3 gene 13774 15384 - Amidophosphoribosyltransferase purF GATase_2 PF00310.25 AOI_3_14 NC_010545.1_AOI_3 gene 13774 15384 - Amidophosphoribosyltransferase purF GATase_2 PF00310.25 AOI_3_14 NC_010545.1_AOI_3 gene 13774 15384 - Amidophosphoribosyltransferase purF GATase_7 PF13537.10 AOI_3_15 NC_010545.1_AOI_3 gene 15400 15783 - AOI_3_16 NC_010545.1_AOI_3 gene 15992 17056 + Uncharacterized acyl-CoA thioester hydrolase YkhA ykhA AOI_3_17 NC_010545.1_AOI_3 gene 17061 18416 + Molybdopterin molybdenumtransferase 2 moaE2 AOI_3_18 NC_010545.1_AOI_3 gene 18487 19146 + AOI_3_19 NC_010545.1_AOI_3 gene 19186 21648 - Phosphoribosylformylglycinamidine synthase subunit PurL purL AOI_3_20 NC_010545.1_AOI_3 gene 21707 22375 - Phosphoribosylformylglycinamidine synthase subunit PurQ purQ AOI_3_21 NC_010545.1_AOI_3 gene 22372 22617 - Phosphoribosylformylglycinamidine synthase subunit PurS purS AOI_3_22 NC_010545.1_AOI_3 gene 22776 24992 - Dipeptidyl aminopeptidase BI dapb1 AOI_3_sORF_0001 NC_010545.1_AOI_3 sORF 25184 25367 + AOI_3_23 NC_010545.1_AOI_3 gene 25374 26189 + AOI_3_24 NC_010545.1_AOI_3 gene 26402 27295 - Phosphoribosylaminoimidazole-succinocarboxamide synthase purC AOI_3_25 NC_010545.1_AOI_3 gene 27363 28580 - Uncharacterized protein Mb1524 fabG2 AOI_3_26 NC_010545.1_AOI_3 gene 28626 29045 - AOI_3_27 NC_010545.1_AOI_3 gene 29094 30536 - Adenylosuccinate lyase purB AOI_3_28 NC_010545.1_AOI_3 gene 30592 31494 - Endonuclease 8 1 nei1 AOI_3_29 NC_010545.1_AOI_3 gene 31513 32790 - Phosphoribosylamine--glycine ligase purD AOI_3_30 NC_010545.1_AOI_3 gene 32883 33320 + Uncharacterized HIT-like protein ML2237 yhhZ AOI_3_31 NC_010545.1_AOI_3 gene 33343 34206 + Triacylglycerol lipase lip AOI_3_32 NC_010545.1_AOI_3 gene 34145 35734 - Probable sensor histidine kinase TcrY tcrY HisKA PF00512.29 AOI_3_32 NC_010545.1_AOI_3 gene 34145 35734 - Probable sensor histidine kinase TcrY tcrY HATPase_c_2 PF13581.10 AOI_3_33 NC_010545.1_AOI_3 gene 35747 36454 - Probable transcriptional regulatory protein TcrX tcrX Response_reg PF00072.28 AOI_3_33 NC_010545.1_AOI_3 gene 35747 36454 - Probable transcriptional regulatory protein TcrX tcrX Trans_reg_C PF00486.32 AOI_3_34 NC_010545.1_AOI_3 gene 36738 37544 + AOI_3_35 NC_010545.1_AOI_3 gene 37645 38175 + Mycothiol acetyltransferase mshD AOI_3_36 NC_010545.1_AOI_3 gene 38206 39969 - Phospholipase D pld AOI_3_37 NC_010545.1_AOI_3 gene 39969 40187 - AOI_3_38 NC_010545.1_AOI_3 gene 40623 41219 + Uncharacterized membrane protein YmcC ymcC AOI_3_39 NC_010545.1_AOI_3 gene 41170 41928 + AOI_3_40 NC_010545.1_AOI_3 gene 41931 42632 + AOI_3_41 NC_010545.1_AOI_3 gene 42639 43610 + CurC-like AOI_3_42 NC_010545.1_AOI_3 gene 43612 45006 + Uncharacterized protein in tfuA 3'region yteU YcaO PF02624.20 AOI_3_42 NC_010545.1_AOI_3 gene 43612 45006 + Uncharacterized protein in tfuA 3'region yteU TIGR00702 TIGR00702.1 AOI_3_42 NC_010545.1_AOI_3 gene 43612 45006 + Uncharacterized protein in tfuA 3'region yteU TIGR00702 TIGR00702.1 AOI_3_43 NC_010545.1_AOI_3 gene 45018 45851 + Putative nitroreductase MJ1384 acaA antibiot_sagB TIGR03605.1 AOI_3_44 NC_010545.1_AOI_3 gene 45848 46426 + AOI_3_45 NC_010545.1_AOI_3 gene 46664 46831 + AOI_3_sORF_0002 NC_010545.1_AOI_3 sORF 46834 47038 + AOI_3_sORF_0004 NC_010545.1_AOI_3 sORF 47012 47327 - AOI_3_sORF_0003 NC_010545.1_AOI_3 sORF 47043 47268 + AOI_3_sORF_0003 NC_010545.1_AOI_3 sORF 47754 48030 - AOI_3_46 NC_010545.1_AOI_3 gene 48126 49475 + Probable transposase for insertion sequence element traY AOI_3_sORF_0004 NC_010545.1_AOI_3 sORF 49578 50010 + AOI_3_sORF_0002 NC_010545.1_AOI_3 sORF 49903 50152 - AOI_3_sORF_0001 NC_010545.1_AOI_3 sORF 50167 50377 - AOI_3_47 NC_010545.1_AOI_3 gene 50593 51147 + AOI_3_48 NC_010545.1_AOI_3 gene 51163 51480 + Insertion element IS401 uncharacterized 12.4 kDa protein yisX AOI_3_49 NC_010545.1_AOI_3 gene 51477 52391 + Putative transposase for insertion sequence element IS986/IS6110 IS1086 AOI_3_50 NC_010545.1_AOI_3 gene 52732 53880 + AOI_3_51 NC_010545.1_AOI_3 gene 54180 55850 + Threonine/serine exporter thrE AOI_3_52 NC_010545.1_AOI_3 gene 55939 56340 + AOI_3_53 NC_010545.1_AOI_3 gene 56395 57954 + Trehalose-6-phosphate synthase otsA AOI_3_54 NC_010545.1_AOI_3 gene 57954 58466 + AOI_3_55 NC_010545.1_AOI_3 gene 58530 58859 + Trehalose-phosphate phosphatase otsB