TransTermHP v2.08 (built on Jan 14 2011)
25 bins; sample size is 20000000
--pval-conf=/data/pg-molgen/software/bagel4/tools/transterm_hp_v2.09/expterm.dat

--gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6
--max-len=59 --min-stem=4 --max-loop=13 --min-loop=3
--uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5
--loop-penalty=1,2,3,4,5,6,7,8,9,10,11
--start-cut=0 --end-cut=25

Genes: 0.585003 %AT, 1747 nt, 12 terms.
Intergenic: 0.585131 %AT, H2T: 484 nt, 1 terms; T2T: 61 nt, 0 terms; H2H: 275 nt, 1 terms. 

Each terminator entry starts in column 3 and is of the form:
  term #       start - end      +/-  regionconf   hp     tail | notes
Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail.
Genes are interspersed, and start the first column.


SEQUENCE NZ_FMYP010001211.70.AOI_01  (length 5781)

orf00006         4947 - 3733     - | 
sORF_3           5114 - 5010     - | 
  TERM 1         5082 - 5059     - GR  100 -14.6 -5.52023 | opp_overlap 5057, overlap 5048
  AGTAGGAATAAAAAA          CTCCCCGCTG CAAG CAACGGGGAG           ACATTACTATACGCA
orf00007         5283 - 5089     - | 
sORF_2           5426 - 5295     - | 
sORF_1           5390 - 5503     + | 
orf00010         5688 - 5515     - |