Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Tannerellaceae//Parabacteroides_goldsteinii.result/NZ_KQ0339121.24.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Tannerellaceae//Parabacteroides_goldsteinii.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Tannerellaceae//Parabacteroides_goldsteinii.result/NZ_KQ0339121.24.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Tannerellaceae//Parabacteroides_goldsteinii.result/NZ_KQ0339121.24.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Tannerellaceae//Parabacteroides_goldsteinii.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_KQ0339121.24.AOI_01 Sequence length = 21119 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +3 150 153 314 162 159 -6.00 0 - 0 0 - 99 0 +2 2 311 751 747 438 -1.65 0 - 0 - - 99 - +1 811 844 981 168 135 -9.71 0 0 12 82 - 4 - 0001 -3 1049 1010 888 159 120 -2.58 19 - 78 2 - - 19 0002 +3 618 732 1061 441 327 -1.62 99 - - 99 - - - +2 1148 1343 1495 345 150 -3.75 0 0 0 - - 99 0 +1 1339 1393 1632 291 237 -4.54 0 0 - - - 99 - 0003 -2 1648 1564 992 654 570 6.03 99 - - - - 99 - 0004 -1 1830 1821 1687 141 132 -2.82 99 - - - 99 - - -2 2119 2029 1850 267 177 0.57 0 0 - 99 - 0 - -3 2471 2063 1920 549 141 -0.83 0 0 - 99 - 0 0 +1 2293 2344 2475 180 129 -1.14 0 0 - 99 0 - 0 -1 2598 2334 2113 483 219 -12.89 0 - - 99 0 - 0 +1 2578 2581 2706 126 123 -13.17 0 0 - 99 - - 0 -1 2787 2766 2611 174 153 -15.70 0 - - 99 0 - 0 +2 2801 2912 3115 312 201 -5.78 0 - 0 99 - - - -1 3303 3273 3031 270 240 -4.48 0 - - 99 0 - - -2 3577 3502 3347 228 153 -8.70 0 - - 99 - 0 - 0005 +3 1791 1812 3797 2004 1983 9.41 99 - - 99 - - - -1 4611 4593 4456 153 135 -4.52 0 0 - 0 0 - 99 +3 4143 4395 4634 489 237 -4.45 0 - - 0 - - 99 +1 4453 4513 4770 315 255 -0.67 0 0 - - - - 99 +3 4635 4725 4853 216 126 -1.55 0 - - 0 0 - 99 -1 5088 4773 4612 474 159 -9.21 0 - - - 0 - 99 0006 -3 5153 5108 3873 1278 1233 10.27 99 - - - - - 99 0007 +2 5117 5150 5290 171 138 5.10 99 - 99 - - - - 0008 -1 5358 5325 5170 186 153 4.43 99 - - - 99 - - +2 5291 5312 5452 159 138 -3.47 0 - 0 99 - - - -1 5538 5538 5359 177 177 -5.53 0 - - 99 0 - - -3 5624 5600 5442 180 156 -3.13 0 - - 99 - - 0 -2 5740 5707 5531 207 174 2.14 0 0 - 99 - 0 - +1 5518 5614 5772 252 156 -0.09 0 0 - 99 - - - +1 5773 5782 5904 129 120 -0.31 0 0 - 99 - - 0 -3 5948 5948 5718 228 228 1.44 0 - - 99 - - 0 -2 6010 6010 5831 177 177 2.61 0 - - 99 - 0 - +2 6269 6401 6559 288 156 -6.23 0 - 0 99 - - - -2 6628 6625 6488 138 135 -2.22 0 - - 99 0 0 - +2 6560 6563 6697 135 132 -6.97 0 - 0 99 - - 0 +1 6751 6760 6906 153 144 -6.19 0 0 - 99 - - 0 -3 6923 6920 6519 402 399 3.61 0 - - 99 - - 0 -2 7000 6991 6854 144 135 0.42 0 - - 99 - 0 - -3 7196 7166 7017 177 147 0.59 0 - - 99 - - 0 +1 7033 7054 7242 207 186 -5.12 0 0 - 99 - - - +1 7243 7270 7392 147 120 -1.70 0 0 0 99 - 0 - -2 7393 7384 7226 165 156 2.39 0 - 0 99 - 0 - +1 7393 7441 7566 171 123 -2.07 0 0 - 99 - - - +2 7601 7637 7759 156 120 2.83 0 - 0 99 - - 0 -3 7904 7820 7500 402 318 3.06 0 - - 99 - - 0 -2 7990 7954 7781 207 171 2.33 0 - - 99 - 0 - -2 8224 8191 8054 168 135 -2.56 0 - - 99 - 0 - -3 8771 8759 8370 399 387 -0.14 0 - - 99 - - 0 -2 8833 8794 8609 222 183 -1.44 0 - - 99 - 0 - -1 8922 8895 8767 153 126 -3.80 0 - 0 99 0 - - -3 9101 9062 8928 171 132 -0.30 0 - - 99 - - 0 -2 9223 9130 8957 264 171 -4.33 0 - - 99 - 0 - 0009 +3 5277 5277 9293 4014 4014 10.66 99 - - 99 - - - 0010 -2 9349 9349 9224 123 123 7.76 99 - - - - 99 - 0011 -1 9495 9465 9343 150 120 -6.72 25 - 74 - 25 - - 0012 -2 9628 9619 9482 144 135 4.47 13 86 - - - 13 - 0013 +1 9481 9544 9714 231 168 6.37 99 99 - - - - - 0014 -3 9950 9944 9798 150 144 -3.07 95 - - - 4 - 95 0015 -1 9954 9930 9766 186 162 -6.67 99 - - - 99 - - +3 9900 10002 10130 228 126 2.87 0 0 0 0 - - 99 +2 9917 10013 10147 228 132 -6.79 0 - 0 - - - 99 +3 10290 10320 10565 273 243 -3.68 0 - - 0 - - 99 +1 10459 10489 10629 168 138 0.64 0 0 - - - - 99 +1 10945 10975 11127 180 150 4.73 0 0 - 0 - - 99 +3 10566 10626 11153 585 525 -2.15 0 - - 0 - - 99 0016 -3 11159 11144 9984 1173 1158 13.94 99 - - - - - 99 +3 11154 11199 11360 204 159 -0.89 0 - 0 0 - 99 - +2 11027 11171 11368 339 195 0.71 0 - 0 - - 99 - +3 11361 11418 11543 180 123 -2.79 0 - 0 0 - 99 - +2 11369 11378 11632 261 252 -4.41 0 - 0 - - 99 - +3 11544 11586 11798 252 210 -1.04 0 - - 0 - 99 - +2 11852 11915 12055 201 138 -1.10 0 - 0 - - 99 - 0017 -2 12175 12163 11156 1017 1005 10.09 99 - - - - 99 - +1 12148 12292 12723 573 429 -0.28 0 0 - - 99 - - +2 12536 12623 12751 213 126 -1.22 0 - 0 - 99 - 0 0018 -1 13260 13239 12166 1092 1071 12.38 99 - - - 99 - - 0019 +2 13004 13004 13282 276 276 -4.68 99 - 99 - - - - -2 13483 13471 13349 132 120 -3.35 0 0 - 0 - 0 99 +3 13275 13320 13487 210 165 -6.53 0 0 - 0 - - 99 +1 13246 13432 13674 426 240 1.24 0 0 - - - - 99 +3 13512 13767 13895 381 126 -0.51 0 - - 0 - - 99 0020 -3 13901 13877 13242 657 633 12.94 99 - - - - - 99 0021 -3 14159 14147 13995 162 150 -1.01 99 0 - - - - 99 0022 +3 14058 14130 14297 237 165 5.26 99 - - 99 - - - +1 14233 14461 14763 528 300 -3.29 0 0 - - 99 - - +1 14764 14935 15120 354 183 -2.62 0 0 - - 99 - - -3 15254 15152 14991 261 159 -3.14 0 - - 0 99 - 0 +1 15121 15250 15465 342 213 -1.96 0 0 - - 99 - - +1 15559 15640 15777 216 135 -2.59 0 0 - - 99 - - 0023 -1 16146 16134 14245 1899 1887 11.88 99 - - - 99 - - 0024 +1 16042 16054 16251 207 195 -3.45 99 99 - - - - - +3 16335 16386 16622 285 234 -6.39 0 0 - 0 99 - - +1 16351 16378 16812 459 432 -0.39 0 0 - - 99 - - -3 17030 16997 16863 165 132 -2.60 0 0 - - 99 - 0 -3 17558 17513 17391 165 120 -4.76 0 0 1 - 98 - 0 -3 17942 17942 17778 162 162 -6.93 0 - - - 99 - 0 +2 17867 17891 18073 204 180 -1.42 0 0 0 - 99 - - +1 17818 17851 18126 306 273 -3.70 0 0 - - 99 - - -3 18251 18209 18066 183 141 -6.76 0 - - - 99 - 0 +1 18127 18175 18342 213 165 -5.77 0 0 - - 99 - - -3 18572 18530 18399 171 129 3.70 0 0 - - 99 - 0 +1 18343 18559 18819 474 258 -2.23 0 0 - - 99 - - -3 18917 18917 18789 126 126 -11.94 0 - 0 - 99 - 0 +2 18701 18836 19003 300 165 -2.66 0 0 0 - 99 - - +1 18820 18907 19101 279 192 -0.27 0 0 - - 99 - - -3 19421 19418 19245 174 171 -4.16 0 - 0 - 99 - 0 +2 19241 19319 19459 216 138 -3.88 0 - 0 - 99 - - 0025 -1 19674 19599 16147 3525 3450 12.52 99 - - - 99 - - +1 19969 19975 20181 210 204 -4.45 0 0 - - 99 - - +3 20250 20253 20390 138 135 -6.54 0 - - 0 99 - - +1 20509 20509 20793 282 282 -4.53 0 0 - - 99 - - +3 20646 20688 20849 201 159 3.02 0 - - 0 99 - - 0026 -1 20874 20862 19840 1032 1020 10.95 99 - - - 99 - - 0027 -1 21117 21087 20929 186 156 12.74 99 - - - 99 - -