Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Tannerellaceae//Parabacteroides_goldsteinii.result/NZ_KE1595221.15.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Tannerellaceae//Parabacteroides_goldsteinii.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Tannerellaceae//Parabacteroides_goldsteinii.result/NZ_KE1595221.15.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Tannerellaceae//Parabacteroides_goldsteinii.result/NZ_KE1595221.15.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Tannerellaceae//Parabacteroides_goldsteinii.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_KE1595221.15.AOI_01 Sequence length = 21119 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +3 3 33 191 186 156 9.63 99 - - 99 - - - -3 611 611 327 282 282 -3.63 0 - - 99 - - 0 -1 870 867 730 138 135 -7.71 0 - - 99 0 - - -3 1151 1145 939 210 204 -3.15 0 - - 99 - - 0 0002 +3 246 258 1280 1032 1020 10.77 99 - - 99 - - - +1 1699 1702 1875 174 171 -4.71 0 0 - 99 - 0 - -2 1879 1801 1661 216 138 -6.05 0 - - 99 - 0 - -3 2300 2213 2019 279 192 -1.46 0 - - 99 - - 0 +1 2203 2203 2331 126 126 -12.92 0 0 - 99 - 0 - -2 2419 2284 2117 300 165 -1.98 0 - - 99 - 0 0 +1 2548 2590 2721 171 129 5.20 0 0 - 99 - - 0 -3 2777 2561 2301 474 258 -2.09 0 - - 99 - - 0 -3 2993 2945 2778 213 165 -4.80 0 - - 99 - - 0 +1 2869 2911 3054 183 141 -7.00 0 0 - 99 - - - -2 3253 3250 3047 204 201 0.30 0 - - 99 - 0 0 -3 3302 3269 2994 306 273 -3.05 0 - - 99 - - 0 +1 3178 3178 3315 135 135 -7.10 0 0 - 99 - - - +1 3562 3607 3729 165 120 -7.57 0 0 - 84 - 15 0 +1 4090 4123 4257 165 132 -2.56 0 0 - 99 - - 0 -3 4769 4742 4059 708 681 -1.67 0 - - 99 - - 0 -1 4785 4734 4498 285 234 -7.35 0 - - 99 0 - 0 0003 +3 1446 1521 4973 3525 3450 7.76 99 - - 99 - - - 0004 -3 5078 5066 4869 207 195 -1.96 99 - - - - - 99 -3 5561 5480 5343 216 135 -2.10 0 - - 99 - - 0 -3 5999 5870 5655 342 213 -1.18 0 - - 99 - - 0 +1 5866 5968 6129 261 159 -1.92 0 0 - 99 0 - - -3 6356 6185 6000 354 183 -1.88 0 - - 99 - - 0 0005 +3 4974 4986 6875 1899 1887 11.65 99 - - 99 - - - -3 6887 6659 6357 528 300 -1.84 0 - - 99 - - 0 0006 -1 7062 6990 6823 237 165 4.58 99 - - - 99 - - 0007 +1 6961 6973 7125 162 150 -2.89 99 99 - - - - 0 -1 7608 7365 7225 381 138 -1.35 0 99 - - 0 - - +2 7637 7649 7771 132 120 -4.16 0 99 0 - 0 - 0 -1 7845 7800 7633 210 165 -6.97 0 99 - - 0 - 0 -3 7874 7688 7446 426 240 -0.35 0 99 - - - - 0 0008 +1 7219 7243 7878 657 633 12.20 99 99 - - - - - 0009 -2 8116 8116 7751 363 363 -8.51 99 - - - - 99 - -2 8584 8497 8369 213 126 -2.72 0 - - 99 - 0 - 0010 +3 7860 7881 8954 1092 1071 12.04 99 - - 99 - - - -3 8972 8828 8397 573 429 -0.39 0 - - 99 - - 0 -1 9576 9534 9322 252 210 -0.37 0 - 99 - 0 - - -2 9751 9742 9488 261 252 -3.82 0 - 99 - - 0 - -1 9759 9702 9577 180 123 -3.60 0 - 99 - 0 0 - 0011 +2 8945 8957 9964 1017 1005 10.31 99 - 99 - - - - -1 9966 9921 9760 204 159 -0.54 0 - 99 - 0 0 - -2 10093 9949 9752 339 195 1.93 0 - 99 - - 0 - -3 10175 10145 9993 180 150 1.92 0 99 - - 0 - 0 -1 10554 10494 9967 585 525 -0.84 0 99 - - 0 - - -3 10661 10631 10491 168 138 1.91 0 99 - - - - 0 -1 10830 10800 10555 273 243 -0.98 0 99 - - 0 - - 0012 +1 9961 9976 11136 1173 1158 13.97 99 99 - - - - - -2 11203 11107 10973 228 132 -7.20 0 99 - - - 0 - -1 11220 11118 10990 228 126 3.04 0 99 - - 0 0 0 0013 +1 11170 11176 11322 150 144 -3.98 99 99 - - - - - 0014 +2 11624 11654 11776 150 120 -5.95 99 - 99 - - - - 0015 +1 11770 11770 11895 123 123 7.83 99 99 - - - - - +1 11896 12001 12162 264 159 -5.13 0 0 - - - - 99 +3 12018 12057 12191 171 132 0.78 0 - - 0 - - 99 +2 12197 12224 12352 153 126 -4.87 0 - 0 - 0 - 99 +1 12286 12325 12510 222 183 -1.43 0 0 - - - - 99 +3 12348 12360 12749 399 387 0.54 0 - - 0 - - 99 +1 12895 12928 13065 168 135 -2.38 0 0 - - - - 99 +1 13129 13165 13338 207 171 2.73 0 0 - - - - 99 -1 13518 13482 13360 156 120 2.41 0 - - 0 0 - 99 +3 13215 13299 13619 402 318 2.56 0 - - 0 - - 99 -2 13876 13849 13727 147 120 -2.60 0 0 - - 0 0 99 +1 13726 13735 13893 165 156 2.62 0 0 - - 0 - 99 -2 14086 14065 13877 207 186 -5.31 0 - - - - 0 99 +3 13923 13953 14102 177 147 1.72 0 - - 0 - - 99 +1 14119 14128 14265 144 135 -0.69 0 0 - - - - 99 -2 14368 14353 14213 153 138 -6.14 0 - - 0 - 0 99 -1 14559 14556 14422 135 132 -7.55 0 - - 0 0 - 99 +3 14196 14199 14600 402 399 2.38 0 - - 0 - - 99 -1 14850 14718 14590 258 126 -5.46 0 - - - 0 - 99 -2 15007 14941 14804 201 135 -7.96 0 - - - - 0 99 +1 15109 15109 15288 177 177 3.55 0 0 - - - - 99 -2 15346 15337 15215 129 120 0.08 0 - - 0 - 0 99 +3 15171 15171 15401 228 228 2.34 0 - - 0 - - 99 +1 15379 15412 15588 207 174 0.05 0 0 - - - 0 99 -2 15601 15505 15347 252 156 -0.89 0 - - - - 0 99 +3 15495 15519 15677 180 156 -3.23 0 - - 0 - - 99 +2 15581 15581 15760 177 177 -6.82 0 - 0 - - - 99 -1 15828 15807 15667 159 138 -3.37 0 - - - 0 - 99 0016 -3 15842 15842 11826 4014 4014 10.77 99 - - - - - 99 0017 +2 15761 15794 15949 186 153 5.33 99 - 99 - - - - 0018 -1 16002 15969 15829 171 138 5.25 99 - - - 99 - - +2 16031 16346 16507 474 159 -9.02 0 - 0 99 - - 0 +2 16508 16526 16663 153 135 -2.61 0 - 0 99 - 0 0 -2 16666 16564 16349 315 213 -0.63 0 - - 99 - 0 0 -3 16976 16394 16266 708 126 1.22 0 - 0 99 - - 0 0019 +3 15966 16011 17246 1278 1233 9.97 99 - - 99 - - - 0020 +2 17258 17291 17443 183 150 -0.11 99 - 99 - - - - +3 17460 17481 17609 147 126 -2.32 0 - 99 0 - - 0 -3 17822 17804 17637 183 165 -16.12 0 - 99 - - - 0 -1 17922 17898 17740 180 156 -0.21 0 0 99 - 0 - - +3 18060 18060 18209 147 147 1.61 0 - 99 0 - 0 - -2 18226 18196 17753 471 441 -0.31 0 - 99 - - 0 - -3 18272 18263 18123 147 138 -4.02 0 - 99 - - - 0 +3 18282 18312 18434 150 120 1.69 0 - 99 0 - 0 0 -3 18446 18398 18273 171 123 -9.00 0 - 99 - - 0 0 -2 18469 18454 18227 240 225 -3.90 0 - 99 - - 0 - 0021 +2 17444 17456 18664 1218 1206 10.06 99 - 99 - - - - -3 18830 18827 18684 144 141 -7.38 0 99 - - 0 - 0 -1 18942 18558 18391 549 165 -2.73 0 - 99 - 0 - - +2 18911 18989 19117 204 126 -2.85 0 99 0 - 0 - 0 -1 19254 19167 18985 267 180 -2.65 0 99 - - 0 - 0 -3 19262 19133 18981 279 150 -0.51 0 99 - - - - 0 -1 19464 19461 19255 207 204 3.46 0 99 - - 0 - - -3 19562 19541 19263 297 276 -0.68 0 99 - - - - 0 0022 +1 18613 18661 19584 969 921 11.36 99 99 - - - - - 0023 -1 19713 19590 19465 246 123 -0.89 99 - - - 99 - - +1 19834 19873 20028 192 153 -0.63 0 0 0 - 99 - - +3 19944 19953 20087 141 132 -19.78 0 - 0 0 99 - - +2 19862 20069 20203 339 132 4.73 0 - 0 - 99 0 - -2 20278 20170 19991 285 177 -10.92 0 - 0 - 99 0 - +3 20193 20241 20408 213 165 -12.78 0 - 0 0 99 - 0 -3 20423 20405 20184 237 219 -8.54 0 - - - 99 - 0 -2 20551 20536 20405 144 129 -7.32 0 - 0 - 99 0 - +2 20234 20381 20593 357 210 -1.38 0 - 0 - 99 - - +2 20597 20609 20740 141 129 -2.52 0 - 0 0 99 0 - +3 20610 20643 20777 165 132 -12.89 0 - - 0 99 0 - -2 20797 20719 20552 243 165 -10.08 0 - - - 99 0 - 0024 -1 21117 21102 19732 1383 1368 8.76 99 - - - 99 - -