Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotellaveae_others.result/NZ_JHXM010000071.1462.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotellaveae_others.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotellaveae_others.result/NZ_JHXM010000071.1462.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotellaveae_others.result/NZ_JHXM010000071.1462.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotellaveae_others.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_JHXM010000071.1462.AOI_01 Sequence length = 17982 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +3 84 87 245 159 156 -1.09 0 - 0 0 - 99 - +1 220 229 411 189 180 -33.09 0 0 0 - - 99 - +3 639 651 782 141 129 6.81 0 - 0 0 - 99 - 0001 +2 2 341 961 957 618 -6.27 0 - 0 - - 99 - +3 1098 1161 1283 183 120 0.27 0 - 0 0 - 99 - -1 1647 1554 1426 219 126 -13.86 0 - 0 0 0 99 - +3 1404 1548 1670 264 120 -2.06 0 - 0 0 - 99 0 -3 1679 1568 1437 240 129 -18.99 0 - 0 0 0 99 0 +1 1624 1645 1797 171 150 -26.08 0 0 0 - - 99 - +3 1785 1980 2123 336 141 -6.29 0 - - 0 - 99 - +2 2261 2321 2533 270 210 -2.94 0 - 0 - - 99 - +3 2349 2475 2615 264 138 -8.37 0 - - 0 - 99 - -1 2994 2931 2767 225 162 -13.92 0 - - 14 0 - 85 +3 2754 2934 3134 378 198 -11.96 0 - - 0 - - 99 0002 -3 3203 2843 2664 537 177 -8.94 99 - - - - - 99 +2 3164 3245 3388 222 141 -3.09 0 0 0 - 99 0 - -2 3445 3322 3194 249 126 -19.43 0 0 0 - 99 0 - +2 3389 3404 3526 135 120 -4.49 0 0 0 - 99 - - +3 3888 3924 4097 207 171 -26.61 0 0 - 0 99 - - -2 4126 4102 3959 165 141 -27.54 0 0 - - 99 0 - +2 3998 4022 4219 219 195 2.02 0 0 0 - 99 - - 0003 +1 2941 3037 4269 1326 1230 -2.23 99 99 - - - - - -2 4360 4252 4127 231 123 -17.74 0 0 - - 99 0 - +2 4322 4337 4489 165 150 9.10 0 - 0 - 99 - - +2 4490 4508 4660 168 150 -1.02 0 - 0 - 99 - - 0004 -1 4848 4788 3127 1719 1659 19.41 99 - - - 99 - - 0005 +2 4661 4757 4900 237 141 -7.22 99 - 99 - - - - 0006 +1 4801 4828 4950 147 120 -14.33 99 99 - - - - - +3 4911 4953 5090 177 135 -14.01 0 0 - 0 - 99 - +2 4994 5000 5131 135 129 -2.04 0 - 0 - - 99 0 +3 5166 5172 5426 258 252 -3.98 0 - 0 0 - 99 - -1 5433 5415 5248 183 165 -21.47 0 - 0 0 0 99 - +3 5427 5472 5711 282 237 3.03 0 - - 0 - 99 - -3 5783 5777 5637 144 138 -13.48 0 - 0 - - 99 0 +2 5522 6002 6133 609 129 -5.98 0 - 0 - - 99 0 -3 6134 6119 5988 144 129 -13.84 0 - 0 - - 99 0 +3 6090 6105 6242 150 135 -7.46 0 - - 0 - 99 - +3 6243 6282 6410 165 126 -5.88 0 - - 0 - 99 - 0007 -2 6475 6400 4907 1566 1491 16.14 99 - - - - 99 - 0008 +2 6332 6365 6499 165 132 -15.70 99 - 99 - - - - -3 6704 6596 6471 231 123 -11.13 0 99 - 0 - - 0 +2 6626 6647 6844 216 195 -10.11 0 - 0 - 99 - - -2 7276 7273 7112 162 159 -28.15 0 0 - - 99 0 - -3 7505 7457 7329 174 126 -17.45 0 0 - - 99 - 0 +1 7756 7804 7977 219 171 -5.22 0 0 0 - 99 - - 0009 -1 8022 8013 6496 1524 1515 16.09 99 - - - 99 - - +2 7775 7862 8026 249 162 -1.73 0 - 0 - 99 - - 0010 -2 8080 8068 7901 177 165 -14.40 99 - - - - 99 - 0011 +3 7983 8049 8273 288 222 -14.70 99 - - 99 - - - +1 8194 8248 8436 240 186 -10.61 0 0 - - - - 99 +3 8340 8349 8510 168 159 6.64 0 - - 0 - - 99 +1 8437 8452 8580 141 126 -7.04 0 0 - - - - 99 +3 8754 8865 9125 369 258 -5.77 0 - - 0 - - 99 -2 9295 9145 8999 294 144 -14.09 0 - - - 0 0 99 +1 9274 9403 9564 288 159 -0.19 0 0 - 0 - - 99 +3 9213 9279 9569 354 288 -2.64 0 - - 0 - - 99 +1 9949 9970 10092 141 120 -8.08 0 0 - 0 - - 99 -2 10279 10273 10085 192 186 -14.78 0 - - 0 - 0 99 +3 9786 9930 10283 495 351 -4.54 0 - - 0 - - 99 +3 10284 10584 10889 603 303 -8.92 0 - - 0 - - 99 0012 -3 10937 10877 8157 2778 2718 14.48 99 - - - - - 99 0013 +1 10621 10846 10992 369 144 -12.74 99 99 - - - - - +3 11049 11415 11546 495 129 -19.20 0 - 0 0 0 99 - -1 11640 11235 11101 537 132 -13.96 0 - 0 0 0 99 - +1 11731 11746 11892 159 144 -28.72 0 0 0 - - 99 - -1 12090 11964 11839 249 123 -13.22 0 - 0 - 0 99 - 0014 +2 10859 10865 12118 1257 1251 -3.36 0 - 0 - - 99 - -3 12242 12212 12063 177 147 -13.92 0 - - - - 99 0 +3 12084 12180 12305 219 123 -10.41 0 - 0 0 0 99 - -1 12309 12225 12091 216 132 -8.98 0 - - 0 0 99 0 +2 12128 12275 12598 468 321 -2.17 0 - 0 - - 99 - -3 12725 12689 12516 207 171 -25.23 0 - - - - 99 0 +2 12599 12650 12844 243 192 -3.56 0 - 0 - - 99 - +2 12845 12845 12982 135 135 -5.59 0 - 0 - - 99 - +3 12867 12873 13007 138 132 -3.04 0 - - 0 - 99 - 0015 -2 13012 12976 10961 2049 2013 14.30 99 - - - - 99 - 0016 +1 13000 13045 13227 225 180 -13.49 35 35 - - - - 64 0017 -3 13316 13199 12900 414 297 -7.38 99 - - - - - 99 0018 -2 13348 13339 13211 135 126 -7.21 91 - - 8 - 91 - 0019 +3 13101 13227 13352 249 123 -8.90 42 - - 42 - 57 - 0020 -2 13711 13657 13526 183 129 -12.55 99 - - - - 99 - 0021 -3 13775 13751 13623 150 126 -9.17 98 - - 0 1 - 98 0022 -1 13827 13701 13564 261 135 -3.66 99 - - - 99 0 - 0023 -3 13991 13940 13776 213 162 11.84 99 - - 0 - - 99 0024 +3 13608 13788 14060 450 270 -13.06 99 - - 99 - - - 0025 +2 13856 14057 14194 336 135 -5.40 99 - 99 - - - - +2 14258 14282 14437 177 153 2.66 0 0 0 - 99 0 - -2 14629 14341 14210 417 129 -11.48 0 0 - - 99 0 - +1 14080 14158 14664 582 504 -7.23 0 0 - - 99 - - +2 14438 14498 14671 231 171 -1.60 0 - 0 - 99 - - +2 14681 14696 14890 207 192 -4.52 0 - 0 - 99 0 - +3 15000 15009 15146 144 135 -20.20 0 0 - 0 99 0 - +2 15125 15188 15349 222 159 -6.90 0 0 0 - 99 - - +1 14722 15316 15471 747 153 -4.32 0 0 - - 99 - - 0026 -1 15525 15507 14107 1416 1398 16.47 99 - - - 99 - - +2 15407 15407 15529 120 120 -13.20 0 - 0 - 99 - - 0027 +2 15533 15563 15733 198 168 -11.78 99 - 99 - - - - +3 15714 15726 15944 228 216 -13.90 0 99 - 0 - - - -1 15996 15897 15766 228 129 -10.68 2 97 0 0 2 - - +2 16004 16058 16192 186 132 -6.68 0 - 0 99 - 0 0 -2 16531 16111 15989 540 120 -1.02 0 - - 99 - 0 0 +2 16193 16307 16537 342 228 -13.10 0 - 0 99 - - 0 -3 16547 16217 15978 567 237 -7.57 0 - - 99 - - 0 -2 16828 16795 16667 159 126 -4.96 0 - - 99 - 0 0 +1 16846 16885 17028 180 141 -13.28 0 0 - 99 0 - 0 -1 17100 17019 16858 240 159 -26.69 0 0 - 99 0 - 0 -2 17299 17113 16988 309 123 6.24 0 - 0 99 - 0 0 -1 17499 17490 17353 144 135 -17.70 0 - 0 99 0 0 0 +2 17306 17387 17593 285 204 -13.11 0 - 0 99 - 0 0 0028 -3 17627 17471 16548 1077 921 -7.62 0 - - 99 - - 0 -2 17674 17503 17300 372 201 -9.19 0 - - 99 - 0 0 -1 17715 17634 17512 201 120 -17.43 0 - - 99 0 0 - +1 17578 17608 17745 165 135 -16.12 0 0 - 99 - - - 0029 +3 15978 16029 17801 1821 1770 10.83 99 - - 99 - - - 0030 -1 17982 17952 17809 171 141 5.04 99 0 - - 99 - -