Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotellaveae_others.result/NZ_FZNZ010000081.2287.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotellaveae_others.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotellaveae_others.result/NZ_FZNZ010000081.2287.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotellaveae_others.result/NZ_FZNZ010000081.2287.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotellaveae_others.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_FZNZ010000081.2287.AOI_01 Sequence length = 20553 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 -3 254 215 87 165 126 -0.57 99 - - - - - 99 -2 400 310 134 264 174 4.69 0 - - 99 - 0 - 0002 +3 117 120 533 414 411 4.03 99 - - 99 - - - -3 542 434 255 285 177 -3.09 10 - - 89 - - 10 0003 +1 274 460 630 354 168 3.28 99 99 - - - - - -1 732 651 523 207 126 -0.65 0 - 99 - 0 - - 0004 +2 521 545 835 312 288 2.55 99 - 99 - - - - 0005 +3 618 768 890 270 120 3.88 34 - - 34 - - 65 0006 -2 1075 1057 884 189 171 6.46 99 - - - - 99 - +3 1122 1140 1298 174 156 3.87 0 - - 0 - - 99 +1 1198 1201 1347 147 144 3.12 0 0 - - - - 99 0007 -3 1481 1412 1113 366 297 9.67 99 - - - - - 99 0008 -3 1733 1724 1545 186 177 -0.06 99 - - - - - 99 +2 1799 1895 2353 552 456 2.02 0 - 0 - - 99 - +3 2304 2310 2435 129 123 -0.62 4 - - 4 - 95 - +2 2354 2435 2644 288 207 3.35 3 - 3 - - 96 - 0009 -2 3046 2722 1724 1320 996 4.59 99 - - - - 99 - 0010 +3 2880 2916 3050 168 132 4.26 17 - - 17 - 82 - +1 3187 3208 3369 180 159 -6.88 4 4 - 91 0 4 - -2 3388 3274 3152 234 120 -0.77 0 - - 0 99 0 - 0011 -1 3393 3387 3148 243 237 -1.75 99 - - - 99 - - +2 3263 3266 3415 150 147 -6.43 0 - 0 99 - - - -2 3787 3775 3650 135 123 -0.20 0 - - 99 - 0 0 0012 -2 3928 3925 3788 138 135 -3.32 48 - - 43 - 48 8 +1 3982 3985 4134 150 147 -1.94 0 0 - 99 - - 0 -2 4378 4357 4229 147 126 -1.48 1 0 - 87 - 1 9 0013 -3 4421 4403 3276 1143 1125 -0.99 0 - - 99 - - 0 0014 +3 3156 3366 4481 1323 1113 2.26 99 - - 99 - - - 0015 +1 4171 4366 4491 318 123 4.03 99 99 - - - - - 0016 +2 4499 4511 4642 141 129 4.53 99 - 99 - - - - 0017 +1 4546 4549 4716 168 165 5.02 99 99 - - - - - 0018 +2 4643 4643 4792 147 147 3.93 99 - 99 - - - - +1 4774 4798 5001 225 201 0.96 0 0 - - - 99 - +3 5079 5079 5210 129 129 7.33 0 - - 0 - 99 - -1 5334 5319 5191 141 126 -2.09 0 - - - 0 99 - +1 5464 5506 5640 174 132 4.91 0 0 - - - 99 - -1 5742 5739 5548 192 189 4.74 0 - - - 0 99 - +3 5676 5688 5837 159 147 8.05 0 - - 0 - 99 - -1 6111 6072 5923 186 147 8.93 0 - - - 0 99 - +1 6040 6067 6210 168 141 -6.02 0 0 - - - 99 - +3 6180 6207 6407 225 198 3.32 0 - - 0 - 99 - +2 6572 6605 6760 186 153 7.17 0 - 0 - - 99 - 0019 -2 6832 6814 4649 2181 2163 12.34 99 - - - - 99 - 0020 +3 6681 6684 6842 159 156 6.87 99 - - 99 - - - 0021 +1 6871 6871 7002 129 129 7.97 99 99 - - - - - -2 7057 7030 6905 150 123 2.94 0 - - - 99 0 - +2 7133 7139 7261 126 120 2.53 2 - 2 - 97 - - +1 7246 7252 7458 210 204 6.68 0 0 - - 99 - - 0022 -1 7689 7662 6880 807 780 12.41 99 - - - 99 - - +2 7442 7538 7693 249 153 7.92 1 - 1 - 98 - - -2 8077 8038 7859 216 177 1.75 0 - - - 99 0 - 0023 -1 8244 8241 7708 534 531 11.55 99 - - - 99 - - 0024 +1 8068 8089 8262 192 171 3.30 99 99 - - - - - +3 8238 8241 8438 198 195 4.46 0 - - 0 - - 99 +1 8458 8461 8649 189 186 7.00 0 0 - - - - 99 +1 8737 8782 8931 192 147 8.60 0 0 - 0 0 - 99 0025 -3 8984 8960 8238 744 720 11.58 99 - - - - - 99 0026 +3 8985 8997 9128 141 129 4.53 99 - - 99 - - - 0027 +2 9032 9035 9163 129 126 9.75 99 - 99 - - - - +1 9190 9205 9327 135 120 5.19 0 0 - 5 - - 94 +3 9201 9321 9545 342 222 1.47 0 - - 0 - - 99 0028 +1 9400 9463 9606 204 141 3.15 81 81 - - - - 18 0029 +2 9491 9542 9694 201 150 3.44 52 - 52 - - - 47 +1 9682 9691 9942 258 249 2.34 0 0 - - - - 99 0030 -3 10004 10004 9108 894 894 6.58 99 - - - - - 99 0031 +1 9943 9982 10122 177 138 6.77 96 96 - - 3 - - 0032 -3 10613 10586 10371 240 213 1.36 78 - - - 21 - 78 +1 10573 10669 10794 219 123 8.13 3 3 0 - 96 - - 0033 -1 10872 10872 9958 912 912 5.39 99 - - - 99 - - +2 10610 10682 10876 264 192 6.15 0 - 0 - 99 - - +1 10828 10855 10992 162 135 -0.95 0 0 - - - 99 - -3 11024 11003 10881 141 120 -1.73 0 - - - - 99 0 +3 11061 11094 11240 177 144 2.99 0 - - 0 - 99 - +2 11279 11303 11431 150 126 1.87 0 - 0 - - 99 - +2 11432 11453 11584 150 129 2.37 1 - 1 - - 98 - +3 11466 11547 11681 213 132 3.32 11 - - 11 - 88 - +1 11575 11584 11718 141 132 -1.67 0 0 - - - 99 - -1 11844 11805 11647 195 156 2.45 1 - - - 1 98 - 0034 -2 12154 12142 10847 1305 1293 8.92 99 - - - - 99 - +2 12170 12215 12400 228 183 2.65 0 - 0 - - 99 - +3 12492 12498 12707 213 207 6.48 0 - - 0 - 99 - 0035 -2 13120 13114 12155 963 957 12.44 99 - - - - 99 - 0036 +1 13033 13042 13215 180 171 5.92 99 99 - - - - - 0037 -3 13343 13322 13197 144 123 6.05 99 - - - - - 99 0038 -1 13545 13533 13390 153 141 -0.69 99 - - - 99 - - 0039 +2 13724 13736 13867 141 129 4.53 99 - 99 - - - - 0040 +3 13791 13803 13961 168 156 7.97 99 0 - 99 - - - 0041 +1 13771 13774 13989 216 213 5.08 99 99 - - - - - +2 14105 14114 14245 138 129 4.70 0 - 0 - - 99 - 0042 -2 14293 14272 13847 444 423 11.10 99 - - - - 99 - 0043 +1 14164 14221 14454 288 231 8.25 99 99 - - - - - 0044 +1 14479 14479 14658 177 177 2.32 99 99 - - - - - -1 14667 14652 14518 147 132 -1.86 7 92 - - 7 - - -2 15070 15064 14885 183 177 2.54 0 - - 99 - 0 - -3 15950 15875 15708 240 165 5.40 0 - - 99 - - 0 -2 16063 16042 15872 189 168 3.26 0 - - 99 - 0 - 0045 +3 14808 14811 16088 1278 1275 11.44 99 - - 99 - - - 0046 +1 16063 16069 16221 156 150 -0.30 99 99 - - - - - -1 16260 16248 16090 168 156 2.25 11 - 88 - 11 - - -3 16289 16280 16113 174 165 -6.54 0 - 99 - - - 0 -1 16440 16431 16261 177 168 -1.09 0 0 99 - 0 - - +1 16246 16366 16533 285 165 -8.29 0 0 99 - - - - -1 16674 16650 16441 231 207 -1.09 0 - 99 - 0 - - -2 16726 16675 16553 171 120 -0.21 0 - 99 - 0 0 - -2 16987 16987 16769 216 216 -1.20 0 - 99 - - 0 - -2 17434 17425 17300 132 123 -1.68 0 - 99 - - 0 0 +1 17326 17332 17511 183 177 -3.98 0 0 99 - - - 0 -3 17543 17399 17268 273 129 -5.20 0 - 99 - - - 0 -2 17593 17587 17435 156 150 -3.52 0 - 99 - - 0 - -2 17920 17869 17681 237 186 -1.76 0 - 99 - - 0 - -2 18058 18055 17921 135 132 -0.19 0 - 99 - - 0 - 0047 +2 16085 16100 18370 2283 2268 6.42 99 - 99 - - - - -2 18895 18868 18641 252 225 2.10 0 - 99 - - 0 - +1 18802 19060 19200 396 138 -7.62 0 0 99 - 0 - - -1 19284 19272 18856 426 414 4.24 0 - 99 - 0 - - +3 19218 19302 19451 231 147 -6.01 0 - 99 0 - 0 - -1 19623 19599 19420 201 177 -2.61 0 - 99 - 0 0 - -2 19684 19678 19280 402 396 3.62 0 - 99 - - 0 - -1 19863 19854 19714 147 138 -0.27 0 - 99 - 0 0 - -2 19975 19867 19685 288 180 3.16 0 - 99 - - 0 - -1 20181 20145 20002 177 141 -3.66 0 - 99 - 0 0 - -2 20206 20185 19976 228 207 0.24 0 - 99 - - 0 - -3 20219 20195 20037 180 156 -6.58 0 - 99 - - 0 0 -2 20419 20371 20207 210 162 -0.57 0 - 99 - - 0 -