{
"AOIs": [ 
{
"name": "NZ_AUFQ010000341.575.AOI_01",
"filename": "/data/pg-molgen/USERS/Vicky/Genomes_Bacteroidales/Prevotellaceae/Prevotellaveae_others/GCF_000146675.1_ASM14667v1_genomic.fna",
"color": "gray",
"yline": 10,
"xstart": 5,
"points": [ {"x":0,"y":10}, {"x":800,"y":10} ]
}
],
"Genes": [
{
"name": "ABC",
"orfname": "orf00004",
"gene_start": 74,
"gene_end": 793,
"gene_strand": "-",
"real_start": 3884,
"real_end": 4603 ,
"real_strand": "+",
"name": "ABC",
"color":     "#ff3f3f",
"yline":     10,
"angle":     -60,
"xtext":     9.26876202694035,
"motifs":    "PF00005",
"function":  "Uncharacterized ABC transporter ATP-binding protein YvfR OS=Bacillus subtilis (strain 168) OX=224308 GN=yvfR PE=3 SV=1",
"annotation":"Species='-'<br>match=31.928%|Evalue=2.26e-18<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|O07016|YVFR_BACSU>sp|O07016|YVFR_BACSU</a>",
"protein":"MMKCSSGNFAFFGKGNFDQNKQNIGVLWDNPVIFPMLKVKEIIGFTRRIYNISELPRDIYDFLELDKIKNRFFYQLSKGERKRVAIFLSVLHNPSLLILDEPTADLDPMIREVIWRNIFKSKNRGVLFTTHLWEEAGKYATKIYFIYEGKIISKALSPQELINESAYQQKIVISKELSGTDPFENDENVLVIPDDKFLKIYLKREDTKTLQKVQTRTYNFSLMPVELEDIYQILVMIKK",
"dna":"ATGATGAAATGTTCATCCGGCAATTTCGCATTTTTCGGAAAAGGCAACTTCGACCAGAACAAACAGAATATTGGTGTGCTTTGGGATAATCCGGTTATTTTCCCCATGTTAAAAGTCAAAGAAATAATCGGATTCACTCGAAGAATCTATAACATATCGGAATTGCCACGAGACATCTACGATTTCCTTGAATTAGATAAGATAAAGAATAGGTTCTTTTATCAACTTTCAAAAGGGGAAAGAAAAAGGGTTGCCATTTTTTTGTCCGTATTACATAACCCGTCATTGTTGATTCTGGATGAACCGACCGCCGATCTCGATCCGATGATAAGGGAGGTTATCTGGAGGAATATTTTCAAAAGCAAAAACCGGGGTGTCCTGTTCACGACACATCTTTGGGAAGAAGCCGGAAAATATGCAACCAAAATCTATTTTATCTACGAAGGGAAAATTATCTCGAAAGCATTGAGCCCGCAGGAATTGATAAATGAGTCGGCATATCAGCAAAAGATTGTCATCTCTAAAGAACTGTCCGGCACTGATCCTTTTGAAAATGATGAAAATGTATTGGTCATCCCAGATGATAAATTCCTCAAAATATACTTGAAGAGAGAAGATACCAAAACATTACAAAAGGTTCAGACCCGAACCTACAATTTTTCACTTATGCCTGTTGAGTTAGAGGATATATATCAAATTTTAGTAATGATAAAAAAA",
"points": [{"x":1.582210818901,"y":1},{"x":1.98221081890101,"y":2},{"x":16.9553132349797,"y":2},{"x":16.9553132349797,"y":0},{"x":1.98221081890101,"y":0}]}
,{
"name": "sORF_1",
"orfname": "sORF_1",
"gene_start": 771,
"gene_end": 908,
"gene_strand": "+",
"real_start": 3769,
"real_end": 3906 ,
"real_strand": "-",
"name": "sORF_1",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     17.9495403036134,
"motifs":    "RBS=TGCGAAA<br>",
"function":  "",
"annotation":"",
"protein":"LPDEHFIILHNNSMNVVFPEPFCPNRATISPGLTSSDTLRRMEVPx",
"dna":"TTGCCGGATGAACATTTCATCATATTACACAACAACTCAATGAATGTTGTCTTTCCGGAACCGTTCTGTCCTAATAGAGCTACAATTTCTCCAGGATTAACTTCCAGCGATACATTGCGCAGGATGGAAGTACCCTGA",
"points": [{"x":16.4849262347659,"y":0},{"x":16.4849262347659,"y":2},{"x":19.014154372461,"y":2},{"x":19.414154372461,"y":1},{"x":19.014154372461,"y":0}]}
,{
"name": "Cyclodehydration",
"orfname": "orf00005",
"gene_start": 924,
"gene_end": 1808,
"gene_strand": "-",
"real_start": 2869,
"real_end": 3753 ,
"real_strand": "+",
"name": "Cyclodehydration",
"color":     "#6ba3ff",
"yline":     10,
"angle":     -60,
"xtext":     29.2067564678213,
"motifs":    "PF00881",
"function":  "Putative nitroreductase MJ1384 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1384 PE=3 SV=1",
"annotation":"Species='-'<br>match=34.595%|Evalue=6.59e-28<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|Q58779|Y1384_METJA>sp|Q58779|Y1384_METJA</a>",
"protein":"MKTIKSKALIASLDSGLYGAKNFGESLALIFNENVKFDKFLIRKQVESIQSFSNKYVHQRSCQPYKVFPTSKEYDLKPYLKEMPGSEKTNLFNILAKRRSGRAYSPYSISLNELALLCHYSYGISGEDFNKESEATLRFRTVPSAGALYPLELYVYLNTSVLPKGIYHYSPNKSVLEFIKEEDYMEYLRENLVAEPFVDLQHCSCVFFITSFFERVLIKYGDRGYRFILQEVGFLTQNISLLAEFLELGSCVLGSYVDDNINQILSADGTFETVQNVIVIGKNKEVQDDNVTSK",
"dna":"ATGAAAACAATAAAATCAAAAGCATTAATAGCAAGCTTAGATTCAGGACTATATGGAGCTAAAAATTTTGGTGAATCGTTGGCTTTGATTTTTAACGAGAATGTGAAATTTGATAAGTTTCTGATTCGCAAACAAGTTGAAAGTATCCAAAGTTTCTCCAATAAATACGTCCACCAACGCTCGTGCCAACCGTATAAAGTGTTTCCCACCAGCAAAGAGTATGATTTGAAACCTTATCTCAAAGAGATGCCTGGTAGTGAAAAAACCAATCTATTCAATATCCTTGCTAAGCGCCGTTCCGGAAGAGCCTATTCTCCTTACTCCATTTCGCTCAACGAGCTGGCGCTACTCTGCCATTATAGCTATGGAATTAGCGGAGAAGACTTTAATAAAGAATCAGAAGCTACGTTACGATTCAGAACGGTTCCATCTGCAGGTGCCTTATATCCACTTGAATTATACGTATATTTGAATACAAGTGTATTGCCTAAAGGAATTTACCATTATAGCCCCAATAAGTCAGTTCTCGAATTCATCAAAGAAGAAGATTATATGGAATATTTAAGAGAAAATCTCGTAGCAGAACCTTTCGTGGATTTGCAACATTGTAGTTGCGTGTTCTTCATCACGTCCTTCTTTGAGAGAGTACTTATCAAATATGGCGACAGAGGCTACCGATTTATACTTCAGGAAGTTGGATTTTTAACTCAGAACATCTCGTTACTCGCCGAATTTCTCGAACTTGGCTCTTGCGTTCTGGGAAGCTACGTTGATGACAACATCAACCAGATCCTCTCTGCTGACGGAACCTTTGAAACTGTGCAAAATGTGATTGTAATTGGAAAAAACAAGGAGGTTCAAGATGACAATGTTACAAGCAAA",
"points": [{"x":19.7562540089801,"y":1},{"x":20.1562540089801,"y":2},{"x":38.6572589266624,"y":2},{"x":38.6572589266624,"y":0},{"x":20.1562540089801,"y":0}]}
,{
"name": "LapBotD",
"orfname": "orf00006",
"gene_start": 1813,
"gene_end": 3108,
"gene_strand": "-",
"real_start": 1569,
"real_end": 2864 ,
"real_strand": "+",
"name": "LapBotD",
"color":     "#6ba3ff",
"yline":     10,
"angle":     -60,
"xtext":     52.6085097284584,
"motifs":    "PF02624",
"function":  "Uncharacterized protein MJ1094 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1094 PE=1 SV=3",
"annotation":"Species='-'<br>match=24.719%|Evalue=2.05e-11<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|Q58494|Y1094_METJA>sp|Q58494|Y1094_METJA</a>",
"protein":"MDAVNNSLIKGTMLISNQFGIVNHVSKLPRLNYDPKLVSFGIWPSNTLAFGAEKYEGRSSGCNFDLQKSFMGTLGETVERYCPVFYNKENMILSSYKNLKVHAIPPSEYALFHEKQYAQENYPLHRFDENIELHWDKCMDITNGKETWVPGACIYLPWSCEKQWINVSTSTGLAAHTNWDKALLVALHEVIERDSFSLTWWQKISAPKIIIDEDISHFIHERFPASYEWHFMDITYDLGIPTVYGICFGEAEYGKFVAVGTATRDTYGEALKKVILEMGQSVSYFRYLLGEKKNWQPSENFHTLLDFEDHSILYIKKPELCEVFKIWTETKPTRKIDFLEESARSTKENIRHITSVLKSKGYNVLVKDITTPDVNQAGFYCLRVIVPQLIQMGGAYSFYFLGGKRLYTIPQELGYKCYPFEELNVYPHPFP",
"dna":"ATGGATGCAGTCAACAACTCTCTGATTAAAGGTACAATGCTGATTTCCAATCAGTTTGGAATCGTAAATCATGTATCCAAATTACCCAGGCTCAATTACGATCCTAAACTTGTAAGCTTTGGTATTTGGCCCAGCAACACTCTGGCTTTCGGAGCAGAAAAGTATGAAGGAAGAAGTAGCGGATGTAACTTTGATCTGCAAAAGTCATTTATGGGAACTTTAGGTGAAACGGTAGAAAGGTATTGCCCCGTATTCTACAATAAAGAGAATATGATCCTAAGTTCTTATAAAAATCTAAAAGTACACGCTATACCGCCCTCGGAATATGCCTTGTTCCATGAGAAGCAATATGCCCAGGAAAATTATCCTCTCCATCGGTTCGACGAGAATATCGAATTACATTGGGATAAATGCATGGATATTACTAATGGGAAAGAAACCTGGGTTCCCGGAGCATGCATCTATCTTCCCTGGTCATGTGAAAAGCAATGGATAAATGTAAGTACATCAACAGGCTTGGCAGCACATACGAATTGGGACAAGGCTTTGCTGGTTGCATTACATGAAGTCATTGAAAGAGATTCGTTTTCTCTCACTTGGTGGCAGAAAATAAGCGCTCCAAAAATTATTATAGACGAGGATATCAGCCATTTTATCCATGAGCGTTTTCCAGCAAGCTACGAGTGGCATTTTATGGATATAACTTACGATTTAGGTATTCCGACAGTTTATGGTATCTGTTTCGGTGAAGCCGAATATGGTAAATTTGTAGCCGTAGGCACTGCGACAAGAGACACCTATGGCGAAGCATTGAAGAAAGTTATTCTCGAAATGGGGCAAAGCGTCAGCTATTTCAGATATTTGTTAGGAGAGAAAAAGAATTGGCAGCCTTCTGAAAACTTTCATACATTACTGGATTTCGAAGACCATTCTATACTATATATAAAAAAACCAGAACTGTGCGAGGTCTTCAAAATCTGGACGGAAACAAAGCCGACCAGAAAGATTGATTTTCTTGAAGAGTCTGCACGCTCAACCAAAGAGAACATCCGGCACATTACCAGCGTACTGAAGTCCAAAGGTTACAATGTATTAGTAAAAGACATCACGACTCCTGATGTAAATCAGGCAGGCTTCTATTGTCTGAGGGTTATCGTTCCTCAATTAATACAAATGGGTGGTGCGTATTCCTTTTATTTCCTGGGCGGAAAAAGACTATATACGATACCGCAGGAACTAGGCTACAAATGCTATCCTTTTGAAGAATTAAATGTATATCCACATCCATTCCCT",
"points": [{"x":38.7641650630746,"y":1},{"x":39.1641650630746,"y":2},{"x":66.4528543938422,"y":2},{"x":66.4528543938422,"y":0},{"x":39.1641650630746,"y":0}]}
,{
"name": "orf00007",
"orfname": "orf00007",
"gene_start": 3121,
"gene_end": 4080,
"gene_strand": "-",
"real_start": 597,
"real_end": 1556 ,
"real_strand": "+",
"name": "orf00007",
"color":     "#8fbcb9",
"yline":     10,
"angle":     -60,
"xtext":     76.9831088304469,
"motifs":    "",
"function":  "Bacteriocin biosynthesis cyclodehydratase, SagC family ",
"annotation":"Species=Clostridium botulinum (strain Kyoto / Type A2) | II | C<br>match=20.803%|Evalue=5.38e-04<br>UniRef:<a href=http://www.uniprot.org/uniprot/C1FSG2_CLOBJ>C1FSG2_CLOBJ</a>",
"protein":"MKQFDIFFDNDNKLYQVRTKTDTTTIEFTDSEKELIFKDLIRLYDTRDKISFSTIQKLLNKADYNKLLDVVKELQECGILDELNFEAEGATVISDIYNEVNHKPVSEMKIAYIGNTDFGNQVKEKSSEYNIEHFVIYSIDELSDETIESILCNSDFIIVDSLTWNPYKMHIINEKALKHSKPWLLIEGLTFSGKFSIGPIFHGKYTGCYDCYKNRIRSNDEFINFNDSYVKYLETEKASAKPDLNIQPVVKDMASAIVIADMLKFLYAWYPPETWKCCILINPSNYEVEKHTFIKAPICHVCKPALDYNPAPWLESVTL",
"dna":"ATGAAACAATTTGATATATTCTTCGATAATGACAATAAACTGTATCAAGTAAGAACCAAAACAGATACAACAACCATAGAATTTACAGATTCCGAAAAAGAACTGATTTTTAAAGACTTGATCAGATTGTACGATACACGGGATAAAATATCTTTTTCAACAATCCAAAAACTATTAAATAAGGCTGACTATAACAAACTTTTGGATGTAGTAAAAGAGTTACAAGAATGTGGAATTCTAGATGAACTGAATTTCGAAGCAGAAGGTGCCACTGTTATTTCTGATATATATAATGAAGTCAATCACAAACCGGTTTCAGAAATGAAGATTGCTTATATTGGCAATACAGATTTTGGCAACCAAGTGAAAGAGAAATCATCCGAATATAACATAGAACATTTTGTTATCTACTCAATAGATGAATTGTCGGATGAAACAATTGAGTCAATCCTCTGTAACAGCGATTTTATCATTGTTGATTCTTTGACTTGGAATCCGTACAAAATGCACATTATCAACGAGAAGGCATTGAAACACAGCAAACCATGGTTATTGATTGAAGGACTGACTTTCTCTGGAAAATTCAGTATTGGGCCGATTTTCCACGGCAAATACACAGGATGTTATGATTGTTACAAAAATAGAATAAGGAGCAATGACGAATTCATCAACTTCAATGACTCTTACGTTAAATACCTTGAAACAGAGAAAGCATCAGCAAAACCAGACTTGAATATCCAACCAGTAGTAAAGGATATGGCTTCCGCTATTGTAATTGCAGATATGCTGAAGTTTCTTTATGCCTGGTATCCCCCGGAAACTTGGAAGTGTTGTATATTGATAAATCCGTCCAATTATGAAGTAGAAAAGCATACTTTTATAAAAGCTCCGATTTGTCATGTATGTAAACCAGCATTGGATTATAATCCGGCTCCGTGGCTCGAATCAGTAACTCTT",
"points": [{"x":66.730810348514,"y":1},{"x":67.130810348514,"y":2},{"x":87.2354073123797,"y":2},{"x":87.2354073123797,"y":0},{"x":67.130810348514,"y":0}]}
,{
"name": "sORF_2",
"orfname": "sORF_2",
"gene_start": 4080,
"gene_end": 4181,
"gene_strand": "+",
"real_start": 496,
"real_end": 597 ,
"real_strand": "-",
"name": "sORF_2",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     88.3151592901433,
"motifs":    "RBS=ATATATCAAATTGTTTCA<br>",
"function":  "",
"annotation":"",
"protein":"LFFNLMGKIETSYLPLLPFVMNRKIVWLQKQTCx",
"dna":"TTGTTTTTTAATTTAATGGGTAAAATCGAAACCAGCTATCTTCCGCTTCTTCCTTTCGTGATGAATCGAAAGATAGTCTGGCTTCAAAAACAGACTTGTTGA",
"points": [{"x":87.2354073123797,"y":0},{"x":87.2354073123797,"y":2},{"x":88.9949112679068,"y":2},{"x":89.3949112679068,"y":1},{"x":88.9949112679068,"y":0}]}
,{
"name": "orf00009",
"orfname": "orf00009",
"gene_start": 4163,
"gene_end": 4288,
"gene_strand": "-",
"real_start": 389,
"real_end": 514 ,
"real_strand": "+",
"name": "orf00009",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     90.3463758819756,
"motifs":    "",
"function":  "",
"annotation":"",
"protein":"VKSHTYTTIISLWYDYSHLSVTQNEILAVIQTTIKNQQVCF",
"dna":"GTGAAATCACACACATATACTACGATTATTAGTTTATGGTACGATTATTCACATTTATCTGTTACGCAGAATGAGATTTTAGCAGTTATTCAAACAACTATCAAAAATCAACAAGTCTGTTTT",
"points": [{"x":89.0100491768227,"y":1},{"x":89.4100491768228,"y":2},{"x":91.6827025871285,"y":2},{"x":91.6827025871285,"y":0},{"x":89.4100491768228,"y":0}]}
]}