Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_timonensis.result/NZ_AUMG010000171.111.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_timonensis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_timonensis.result/NZ_AUMG010000171.111.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_timonensis.result/NZ_AUMG010000171.111.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_timonensis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_AUMG010000171.111.AOI_01 Sequence length = 20550 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 2 68 208 204 138 1.11 0 0 0 - 99 - - 0001 -1 429 417 286 141 129 -2.17 99 - - - 99 - 0 0002 -3 566 344 222 342 120 -1.44 99 - - - - - 99 +3 381 426 572 189 144 -1.18 3 95 - 3 - 1 - 0003 +1 412 442 615 201 171 1.96 99 99 - - - - - +3 750 759 911 159 150 -2.75 0 - - 0 - - 99 -2 973 970 788 183 180 -7.47 0 - - - - 0 99 +2 803 965 1099 294 132 -8.92 0 0 0 - - - 99 0004 -3 1127 1118 567 558 549 5.95 99 - - - - - 99 0005 +1 814 988 1179 363 189 -1.84 99 99 - - - - - -3 1400 1397 1275 123 120 -2.00 0 0 - - 99 - 0 +1 1195 1219 1449 252 228 0.55 0 0 - - 99 - - +2 1379 1382 1588 207 204 -0.24 0 - 0 - 99 - - -2 1987 1945 1784 201 159 -5.30 0 - - - 99 0 - -3 2105 2069 1938 165 129 -3.89 0 - - - 99 - 0 0006 -1 2151 2115 1123 1026 990 7.31 99 - - - 99 - - +3 2307 2367 2501 192 132 1.95 0 - - 0 - - 99 -2 2674 2647 2525 147 120 1.65 0 - - - - 0 99 +1 2701 2740 2862 159 120 -1.35 2 2 0 - - - 97 +3 2814 2838 3191 375 351 -1.24 0 - - 0 - - 99 -2 3238 3217 3092 144 123 -7.21 0 0 - - - 0 99 +1 3028 3163 3297 267 132 -1.38 0 0 - - - - 99 -2 3517 3388 3245 270 141 -5.27 0 - - - - 0 99 +3 3267 3498 3692 423 192 4.30 3 - - 3 - - 96 0007 -3 3719 3659 2328 1389 1329 7.17 99 - - - - - 99 0008 -2 3898 3841 3698 198 141 6.99 99 - - - - 99 - -3 4403 4313 3996 405 315 2.67 0 99 - - - - 0 0009 +1 3991 4009 4515 522 504 5.83 99 99 - - - - - -1 4710 4659 4516 192 141 0.53 0 - 99 - 0 - - 0010 +2 4292 4319 4813 519 492 7.18 99 - 99 - - - - -2 4867 4744 4553 312 189 -4.69 0 - 99 - - 0 - 0011 +3 4608 4674 4874 264 198 -0.79 99 - - 99 - - - 0012 -1 4935 4896 4762 171 132 7.74 99 - - - 99 - - -2 6340 6331 6170 168 159 -0.45 0 - - - - 0 99 +3 6546 6600 6758 210 156 0.22 0 - - 0 - - 99 +1 6883 6910 7041 156 129 4.13 0 0 - - - - 99 +1 7285 7333 7503 216 168 -0.63 0 0 - - - - 99 0013 -3 7673 7655 5559 2112 2094 11.43 99 - - - - - 99 +1 7981 8035 8181 198 144 -1.41 0 0 - - 99 - - 0014 -1 8406 8403 7660 744 741 13.38 99 - - - 99 - - -3 9113 9104 8916 195 186 2.75 0 - - - 99 - 0 0015 -1 9129 9120 8407 720 711 9.96 99 - - - 99 - - +2 9179 9230 9361 180 129 0.91 0 - 0 - - 99 - +3 9387 9414 9584 195 168 1.14 0 - - 0 - 99 - +3 9585 9687 9953 366 264 1.48 0 - - 0 - 99 - 0016 -2 10000 9988 9122 876 864 10.08 99 - - - - 99 - +1 10342 10369 10494 150 123 -0.05 0 0 - - - - 99 -2 10822 10810 10685 135 123 1.93 0 - - - - 0 99 0017 -3 10859 10841 9981 876 858 11.54 99 - - - - - 99 +2 11438 11486 11668 228 180 4.09 0 - 0 - - 99 - +1 11590 11590 11718 126 126 3.05 0 0 - - - 99 - -1 11883 11880 11623 258 255 1.10 0 - - - 0 99 - 0018 -2 12205 12193 10886 1317 1305 10.95 99 - - - - 99 - +3 12309 12345 12479 168 132 5.12 0 - - 0 - - 99 +3 12600 12621 12758 156 135 2.37 0 - - 0 - - 99 0019 -3 13166 13154 12195 969 957 12.50 99 - - - - - 99 0020 +3 13029 13098 13259 228 159 10.67 99 - - 99 - - - +3 13338 13341 13484 144 141 9.46 2 97 - 2 - - - 0021 +1 13330 13345 13533 201 186 9.78 99 99 - - - - - 0022 -3 13757 13733 13581 174 150 3.76 99 - - - - - 99 +1 13777 13792 13932 153 138 -0.34 1 1 - 98 - - - +2 13949 13949 14077 126 126 -6.42 0 - 0 - - - 99 -1 14283 14175 13990 291 183 -4.16 0 0 - 1 0 - 98 +3 13959 14034 14348 387 312 -1.37 0 - - 0 - - 99 +2 14156 14207 14428 270 219 -2.70 0 - 0 - - - 99 0023 -3 14582 14243 13818 762 423 -0.24 99 - - - - - 99 +3 14727 14802 14963 234 159 3.13 0 - - 0 - 99 - +2 14810 14945 15124 312 177 3.56 2 - 2 - - 97 - +3 15021 15021 15161 138 138 -0.06 0 - - 0 - 99 - +3 15162 15195 15332 168 135 0.67 0 - - 0 - 99 - -1 15465 15465 15343 120 120 -1.95 0 - - 0 0 99 - +3 15336 15375 15530 192 153 -3.09 0 - 0 0 - 99 - 0024 -2 15583 15559 14240 1341 1317 5.55 99 - - - - 99 - 0025 +2 15362 15515 15649 285 132 5.62 99 - 99 - - - - +2 15650 15653 15814 162 159 -2.12 0 - 0 0 - 99 - +3 15594 15615 15839 243 222 1.07 0 - - 0 - 99 - +3 15843 15843 16034 189 189 0.96 0 - - 0 - 99 - +2 16343 16406 16597 252 189 4.80 0 - 0 - - 99 - +1 16504 16540 16707 201 165 -1.62 0 0 - - - 99 - -1 16800 16770 16621 177 147 -7.69 0 - 0 0 0 99 - 0026 -2 16831 16819 15590 1239 1227 8.69 99 - - - - 99 - +1 16786 16834 16965 177 129 -0.15 11 11 88 - - - - 0027 +2 16829 16871 17017 186 144 1.43 99 - 99 - - - - 0028 +1 17104 17110 17247 141 135 1.04 98 98 - - - - 1 -3 17270 17231 17100 168 129 -1.85 2 97 - - - - 2 0029 +3 17199 17286 17408 207 120 3.10 99 - - 99 - - - +1 17353 17371 17499 144 126 2.66 0 0 - - - - 99 +2 17555 17594 17743 186 147 -2.41 0 - 0 0 - - 99 +1 17632 17674 17832 198 156 1.44 0 0 - 0 - - 99 +3 17598 17628 17894 294 264 -1.29 0 - - 0 - - 99 0030 +2 17954 17978 18115 159 135 3.73 21 - 21 - - - 78 +3 18108 18129 18266 156 135 1.28 0 - - 0 - - 99 0031 -3 18344 18335 17328 1014 1005 9.57 99 - - - - - 99 0032 +1 18229 18232 18369 138 135 3.55 99 99 - - - - - +1 18400 18403 18546 144 141 -1.02 0 0 - - - 99 - -1 18807 18777 18637 168 138 0.33 0 - - - 0 99 - +2 18716 18752 18889 171 135 3.12 0 - 0 - - 99 - 0033 -2 19003 18967 18377 624 588 9.21 99 - - - - 99 - 0034 +3 19059 19071 19250 189 177 4.08 71 - - 71 - - 28 -3 19319 19196 19062 255 132 4.53 2 - - 93 - 4 2 0035 +1 19234 19267 19398 162 129 8.87 99 99 - - - - - 0036 -2 19618 19504 19373 243 129 1.23 99 - - - - 99 - -3 19736 19526 19404 330 120 -2.95 0 - - 99 - 0 0 -2 19903 19861 19715 186 144 -1.70 0 - 0 99 - 0 - -2 20026 20026 19904 120 120 -7.26 0 - 0 99 - 0 0 +1 20227 20236 20379 150 141 -8.73 0 0 0 99 - - 0 -3 20549 20423 20118 429 303 -7.29 0 - 0 99 - - 0