Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oris.result/NZ_GL3495721.1.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oris.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oris.result/NZ_GL3495721.1.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oris.result/NZ_GL3495721.1.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oris.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_GL3495721.1.AOI_01 Sequence length = 21104 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 47 50 205 156 153 -3.30 0 - 0 - - 99 - 0001 +2 290 308 445 153 135 4.46 99 - 99 - - - - +3 1065 1188 1340 273 150 -1.18 0 0 - 0 - 99 - +1 1171 1174 1350 177 174 -0.16 0 0 - - - 99 - -1 1746 1740 1615 129 123 -4.60 0 - - 0 0 99 - +3 1476 1758 1880 402 120 -5.44 0 - 0 0 - 99 - +2 1754 1754 1921 165 165 -3.29 0 - 0 - - 99 - 0002 -2 2014 1963 476 1536 1485 9.30 99 - - - - 99 - +3 2022 2088 2225 201 135 -0.41 0 0 - 0 - 99 0 -3 2225 2207 2052 171 153 -1.22 0 0 - 0 - 99 0 +1 1984 2107 2253 267 144 -6.45 0 0 - - - 99 - -1 2451 2391 2236 213 153 -4.40 0 - - - 0 99 - +2 2369 2552 2677 306 123 5.46 0 - 0 - - 99 - +3 2757 2799 2999 240 198 -5.00 0 - - 0 - 99 - +2 2975 2981 3175 198 192 -2.75 0 - 0 - - 99 - +3 3240 3240 3383 141 141 -3.16 0 - - 0 - 99 - -1 3546 3504 3364 180 138 -1.83 0 - - - 0 99 - -1 3864 3750 3628 234 120 1.81 1 - 0 - 1 98 - +2 3587 3593 3868 279 273 0.11 0 - 0 - - 99 - -1 4197 4185 4021 174 162 -5.02 0 - 0 - 0 99 - +2 3965 4070 4207 240 135 -2.18 0 - 0 - - 99 - 0003 -2 4393 4390 2015 2376 2373 8.61 99 - - - - 99 - 0004 +3 4473 4494 4640 165 144 3.87 99 - - 99 - - - 0005 -2 4717 4711 4586 129 123 3.51 99 - - - - 99 - -1 5064 5043 4765 297 276 4.90 3 - 96 - 3 - - 0006 +2 4715 4733 5068 351 333 5.07 99 - 99 - - - - +3 5046 5166 5306 258 138 -9.48 0 - 0 0 - 99 - -1 5373 5340 5182 189 156 -6.42 0 - 0 - 0 99 - +2 5069 5087 5389 318 300 -3.43 0 - 0 - - 99 - +2 5759 5837 5977 216 138 -2.60 0 - 0 - - 99 - -1 6201 6201 6070 129 129 -2.23 0 0 - - 0 99 - 0007 -2 6214 6208 4859 1353 1347 10.23 99 - - - - 99 - 0008 +2 6086 6107 6259 171 150 3.68 99 0 99 - - - - 0009 -3 6446 6428 6198 246 228 8.86 99 0 - - - - 99 0010 +1 6061 6082 6450 387 366 1.71 99 99 - - - - - 0011 +2 6260 6326 6460 198 132 0.51 99 - 99 - - - - -2 6730 6691 6566 162 123 2.95 0 - - 0 - 0 99 +3 6489 6708 6866 375 156 -3.72 0 - 0 0 - - 99 +2 6698 6710 6877 177 165 0.97 0 - 0 - - - 99 -2 6907 6862 6731 174 129 -9.75 0 - 0 0 - 0 99 +3 6867 6903 7034 165 129 -1.52 0 - - 0 - - 99 -2 7144 7114 6980 162 132 -0.19 0 - - - - 0 99 +3 7035 7068 7232 195 162 7.03 10 - - 10 - - 89 +1 7126 7147 7290 162 141 3.67 0 0 - - - - 99 -2 7516 7507 7373 141 132 -4.72 0 - - 0 - 0 99 +3 7377 7434 7565 186 129 2.80 0 - - 0 6 - 93 +3 7734 7818 7961 225 141 2.88 0 0 - 0 - - 99 +1 7822 7843 8007 183 162 -0.40 0 0 - - - - 99 +1 8029 8029 8214 183 183 0.80 0 0 - 0 - - 99 +3 8022 8025 8228 204 201 0.70 0 - - 0 - - 99 -2 8434 8419 8243 189 174 0.86 0 - - - - 0 99 +3 8499 8523 8699 198 174 2.65 0 - - 0 - - 99 +3 8826 8844 8969 141 123 -0.21 0 - - 0 - - 99 +1 9040 9082 9258 216 174 -1.68 0 0 - - - - 99 +3 9114 9192 9539 423 345 2.53 0 - - 0 - - 99 +1 9385 9412 9546 159 132 -4.74 0 0 - - - - 99 +3 9651 9681 9803 150 120 -1.27 0 0 - 0 - - 99 0012 -3 10004 9992 6468 3534 3522 10.28 99 - - - - - 99 +1 9964 10069 10215 249 144 3.41 0 0 - - 99 - - +1 10216 10234 10626 408 390 1.50 0 0 - - 99 - - +1 10891 10897 11034 141 135 -2.78 0 0 - - 99 - - -3 11120 11102 10950 168 150 -6.82 0 - - - 99 - 0 0013 -1 11133 11118 9994 1137 1122 10.56 99 - - - 99 - - 0014 +2 11138 11189 11803 663 612 -41.93 88 5 88 6 - - - 0015 -2 11812 11782 11261 549 519 -29.28 42 0 0 0 37 42 19 0016 -1 11937 11901 11221 714 678 -23.21 99 0 - 0 99 - - -2 11998 11941 11813 183 126 -7.08 0 99 - 0 0 0 - 0017 +3 11094 11118 12167 1071 1047 -26.33 0 99 - 0 - - - 0018 +1 11128 11968 12174 1044 204 -1.15 70 70 29 - - - - 0019 +2 11849 12050 12202 351 150 -2.90 99 - 99 - - - - 0020 -1 12207 12192 12061 144 129 -0.86 98 - 1 - 98 - - +1 12226 12283 12408 180 123 -2.95 0 0 0 - - 99 - +2 12203 12326 12469 264 141 -3.64 0 - 0 - - 99 - +1 12409 12541 12666 255 123 -4.08 0 0 - - - 99 0 -3 12914 12839 12717 195 120 -3.07 0 - 0 - - 99 0 +2 12716 12872 13021 303 147 -4.04 0 - 0 - - 99 - 0021 -2 13072 13069 12182 888 885 8.04 99 - - - - 99 - +3 13374 13380 13544 168 162 -3.81 0 - - 0 - - 99 +3 13545 13551 13739 192 186 0.05 0 - - 0 - - 99 +2 13691 13694 13888 195 192 0.31 0 - 0 - - - 99 +1 13822 13825 13953 129 126 -5.71 0 0 - 0 - - 99 -2 14017 13993 13829 186 162 -2.43 0 - - 0 - 0 99 +3 13740 13971 14144 402 171 -1.71 0 - - 0 - - 99 +2 14192 14264 14398 204 132 -8.46 0 - 0 - - - 99 +3 14349 14400 14534 183 132 -2.13 0 0 - 0 - - 99 0022 -3 14564 14564 13062 1500 1500 11.55 99 - - - - - 99 0023 +1 14368 14500 14625 255 123 2.51 99 99 - - - - - +2 14651 14657 14809 156 150 -1.47 0 - 0 - 0 99 - -1 14865 14790 14647 216 141 -1.76 0 - 0 - 0 99 - -1 15162 15099 14947 213 150 1.11 0 - - - 0 99 - +2 14972 14996 15214 240 216 1.86 0 - 0 - - 99 - +3 15183 15183 15317 132 132 -0.67 0 - - 0 - 99 - +2 15839 15890 16015 174 123 -4.18 0 - 0 - - 99 0 0024 -2 16075 16063 14561 1512 1500 13.01 99 - - - - 99 - 0025 +2 16016 16052 16192 174 138 1.33 99 - 99 - - - - +1 16393 16393 16770 375 375 4.64 0 0 - - 99 - - -2 16807 16726 16592 213 132 1.36 0 0 - - 99 0 - 0026 -1 17688 17634 16060 1626 1572 10.78 99 - - - 99 - - 0027 -2 17770 17767 17582 186 183 -2.36 99 - - - - 99 - 0028 -2 17902 17899 17771 129 126 -0.73 83 3 - - 12 83 - 0029 +1 17650 17650 17916 264 264 -3.06 99 99 - - - - - 0030 -3 18011 17978 17820 189 156 -0.80 30 - - - 69 - 30 +3 17907 17910 18047 138 135 -0.35 1 - - 1 98 - - 0031 -1 18054 18036 17764 288 270 0.14 99 - - - 99 - - -2 18391 18364 18197 192 165 -0.20 0 - - - - 0 99 0032 -3 18437 18422 18027 408 393 14.43 99 - - - - - 99 0033 +3 18231 18234 18446 213 210 4.04 99 - - 99 - - - 0034 +2 18347 18353 18634 285 279 0.38 99 - 99 - - - - 0035 -1 18903 18885 18406 495 477 9.80 99 - - - 99 - - +3 18864 18864 18992 126 126 -1.59 0 - 0 0 - 99 - +2 18800 18989 19216 414 225 5.13 0 - 0 - - 99 - +3 19008 19050 19244 234 192 5.31 0 - - 0 - 99 - -1 19365 19353 19222 141 129 -1.27 0 - - - 0 99 - 0036 -2 19495 19477 18860 633 615 12.40 99 - - - - 99 - 0037 +3 19287 19293 19502 213 207 1.51 99 - - 99 - - - +3 19551 19560 19718 165 156 -1.42 0 - - 0 - - 99 -2 19774 19771 19646 126 123 -2.97 0 - - - - 0 99 -1 19896 19857 19720 174 135 5.28 8 - - - 8 - 91 0038 -3 19907 19841 19488 417 351 5.11 99 - - - - - 99 +3 19824 19866 20021 195 153 -0.32 0 - - 0 - 99 - +2 19979 20018 20140 159 120 6.52 1 - 1 - - 98 - -1 20724 20718 20587 135 129 -5.78 0 - - - 0 99 - +3 20616 20697 20822 204 123 -4.06 0 - - 0 - 99 - 0039 -2 21103 21094 19829 1272 1263 9.28 99 - - - - 99 -