/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331191.0.fna -queryname NZ_GL8331191.0
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331191.0.fna -queryname NZ_GL8331191.0
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331191.0.fna -queryname NZ_GL8331191.0
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331191.0.AOI.fna -queryname NZ_GL8331191.0
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331191.0.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331191.0.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -queryname NZ_GL8331191.0
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -table NZ_GL8331191.0.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403021.9.fna -queryname NZ_KE3403021.9
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403021.9.fna -queryname NZ_KE3403021.9
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403021.9.fna -queryname NZ_KE3403021.9
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403021.9.AOI.fna -queryname NZ_KE3403021.9
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403021.9.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403021.9.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -queryname NZ_KE3403021.9
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -table NZ_KE3403021.9.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403041.10.fna -queryname NZ_KE3403041.10
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403041.10.fna -queryname NZ_KE3403041.10
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403041.10.fna -queryname NZ_KE3403041.10
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695421.11.fna -queryname NZ_KI6695421.11
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695421.11.fna -queryname NZ_KI6695421.11
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695421.11.fna -queryname NZ_KI6695421.11
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695421.11.AOI.fna -queryname NZ_KI6695421.11
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695421.11.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695421.11.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -queryname NZ_KI6695421.11
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -table NZ_KI6695421.11.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695461.12.fna -queryname NZ_KI6695461.12
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695461.12.fna -queryname NZ_KI6695461.12
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695461.12.fna -queryname NZ_KI6695461.12
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695441.13.fna -queryname NZ_KI6695441.13
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695441.13.fna -queryname NZ_KI6695441.13
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695441.13.fna -queryname NZ_KI6695441.13
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695431.14.fna -queryname NZ_KI6695431.14
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695431.14.fna -queryname NZ_KI6695431.14
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695431.14.fna -queryname NZ_KI6695431.14
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695411.15.fna -queryname NZ_KI6695411.15
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695411.15.fna -queryname NZ_KI6695411.15
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695411.15.fna -queryname NZ_KI6695411.15
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695451.16.fna -queryname NZ_KI6695451.16
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695451.16.fna -queryname NZ_KI6695451.16
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KI6695451.16.fna -queryname NZ_KI6695451.16
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000081.17.fna -queryname NZ_FQVS010000081.17
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000081.17.fna -queryname NZ_FQVS010000081.17
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000081.17.fna -queryname NZ_FQVS010000081.17
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000041.18.fna -queryname NZ_FQVS010000041.18
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000041.18.fna -queryname NZ_FQVS010000041.18
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000041.18.fna -queryname NZ_FQVS010000041.18
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331171.1.fna -queryname NZ_GL8331171.1
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331171.1.fna -queryname NZ_GL8331171.1
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331171.1.fna -queryname NZ_GL8331171.1
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000121.19.fna -queryname NZ_FQVS010000121.19
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000121.19.fna -queryname NZ_FQVS010000121.19
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000121.19.fna -queryname NZ_FQVS010000121.19
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000151.20.fna -queryname NZ_FQVS010000151.20
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000151.20.fna -queryname NZ_FQVS010000151.20
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000151.20.fna -queryname NZ_FQVS010000151.20
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000031.21.fna -queryname NZ_FQVS010000031.21
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000031.21.fna -queryname NZ_FQVS010000031.21
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000031.21.fna -queryname NZ_FQVS010000031.21
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000091.22.fna -queryname NZ_FQVS010000091.22
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000091.22.fna -queryname NZ_FQVS010000091.22
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000091.22.fna -queryname NZ_FQVS010000091.22
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000021.23.fna -queryname NZ_FQVS010000021.23
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000021.23.fna -queryname NZ_FQVS010000021.23
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000021.23.fna -queryname NZ_FQVS010000021.23
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000141.24.fna -queryname NZ_FQVS010000141.24
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000141.24.fna -queryname NZ_FQVS010000141.24
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000141.24.fna -queryname NZ_FQVS010000141.24
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000061.25.fna -queryname NZ_FQVS010000061.25
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000061.25.fna -queryname NZ_FQVS010000061.25
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000061.25.fna -queryname NZ_FQVS010000061.25
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000111.26.fna -queryname NZ_FQVS010000111.26
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000111.26.fna -queryname NZ_FQVS010000111.26
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000111.26.fna -queryname NZ_FQVS010000111.26
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000071.27.fna -queryname NZ_FQVS010000071.27
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000071.27.fna -queryname NZ_FQVS010000071.27
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000071.27.fna -queryname NZ_FQVS010000071.27
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000101.28.fna -queryname NZ_FQVS010000101.28
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000101.28.fna -queryname NZ_FQVS010000101.28
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000101.28.fna -queryname NZ_FQVS010000101.28
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331161.2.fna -queryname NZ_GL8331161.2
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331161.2.fna -queryname NZ_GL8331161.2
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331161.2.fna -queryname NZ_GL8331161.2
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000051.29.fna -queryname NZ_FQVS010000051.29
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000051.29.fna -queryname NZ_FQVS010000051.29
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000051.29.fna -queryname NZ_FQVS010000051.29
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000131.30.fna -queryname NZ_FQVS010000131.30
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000131.30.fna -queryname NZ_FQVS010000131.30
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000131.30.fna -queryname NZ_FQVS010000131.30
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000011.31.fna -queryname NZ_FQVS010000011.31
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000011.31.fna -queryname NZ_FQVS010000011.31
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000011.31.fna -queryname NZ_FQVS010000011.31
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_annotation.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -model false -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000011.31.AOI.fna -queryname NZ_FQVS010000011.31
/data/pg-molgen/software/bagel4_2022/bagel4_promoterprediction.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000011.31.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_transterm.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_FQVS010000011.31.AOI.fna
/data/pg-molgen/software/bagel4_2022/bagel4_promoter_term_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -queryname NZ_FQVS010000011.31
/data/pg-molgen/software/bagel4_2022/bagel4_GeneTable_2_json.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -table NZ_FQVS010000011.31.GeneTables
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331181.3.fna -queryname NZ_GL8331181.3
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331181.3.fna -queryname NZ_GL8331181.3
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_GL8331181.3.fna -queryname NZ_GL8331181.3
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403031.4.fna -queryname NZ_KE3403031.4
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403031.4.fna -queryname NZ_KE3403031.4
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403031.4.fna -queryname NZ_KE3403031.4
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403051.5.fna -queryname NZ_KE3403051.5
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403051.5.fna -queryname NZ_KE3403051.5
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403051.5.fna -queryname NZ_KE3403051.5
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403071.6.fna -queryname NZ_KE3403071.6
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403071.6.fna -queryname NZ_KE3403071.6
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403071.6.fna -queryname NZ_KE3403071.6
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403011.7.fna -queryname NZ_KE3403011.7
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403011.7.fna -queryname NZ_KE3403011.7
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403011.7.fna -queryname NZ_KE3403011.7
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_hmm_rules.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403061.8.fna -queryname NZ_KE3403061.8
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_identification_blast_bacteriocins.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -translate true -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403061.8.fna -queryname NZ_KE3403061.8
/data/pg-molgen/software/bagel4_2022/bagel4_AOI_merge.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result -dna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result/NZ_KE3403061.8.fna -queryname NZ_KE3403061.8
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result
/data/pg-molgen/software/bagel4_2022/bagel4_clean_tmpfiles.pl -s /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_oralis.result