Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/NZ_JRNS010002181.203.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/NZ_JRNS010002181.203.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/NZ_JRNS010002181.203.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_JRNS010002181.203.AOI_01 Sequence length = 12180 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 16 109 294 276 183 2.00 0 0 - - - - 99 -1 513 438 313 198 123 -3.80 0 - - - 0 - 99 -2 769 715 593 174 120 -7.83 0 - - - - 0 99 -1 1185 1158 1036 147 120 -6.86 0 - 0 0 0 99 - +2 1040 1163 1306 264 141 -4.77 0 - 0 - - 99 - +3 1800 1806 1934 132 126 -6.10 0 - 0 0 0 99 - -1 1971 1869 1711 258 156 -11.93 0 - 0 - 0 99 - +2 1670 1796 1975 303 177 2.99 0 - 0 - 0 99 - +2 2006 2018 2146 138 126 -7.41 0 - 0 0 - 99 - +3 2022 2109 2261 237 150 0.71 0 - - 0 - 99 - +2 2354 2357 2497 141 138 -0.21 0 - 0 - - 99 - 0001 -2 2530 2509 911 1617 1596 9.70 99 - - - - 99 - 0002 -3 2759 2753 2589 168 162 1.18 99 - - - - - 99 0003 +3 2685 2715 2855 168 138 1.97 99 - - 99 - - - 0004 +3 2970 2970 3128 156 156 -0.92 99 - - 99 - - - 0005 -1 3192 3186 3022 168 162 -3.77 99 - - - 99 - - 0006 -3 3350 3326 3129 219 195 -3.57 99 - - - - - 99 +2 3719 3728 3955 234 225 -1.71 0 - 0 - - 99 - +1 4051 4072 4197 144 123 -7.88 0 0 - - - 99 - 0007 -2 4462 4453 3437 1023 1014 12.14 99 - - - - 99 - 0008 +1 4393 4396 4551 156 153 0.20 99 99 - - - - - 0009 -1 5058 4740 4507 549 231 2.78 99 - - - 99 - - +2 4772 4985 5140 366 153 -4.35 0 99 0 - - - - -3 5195 5144 5022 171 120 -5.11 0 99 - - - - 0 -1 5385 5229 5068 315 159 -0.77 0 99 - - 0 - - +2 5237 5303 5437 198 132 -7.62 0 99 0 - - - - 0010 +1 4555 4570 5757 1200 1185 14.16 99 99 - - - - - 0011 -3 6032 6017 5805 225 210 -5.18 99 - - - - - 99 0012 +1 5830 5911 6060 228 147 -1.91 99 99 - - - - - -2 6103 6100 5948 153 150 -3.56 0 - - - 99 0 - +2 5978 6011 6202 222 189 -2.24 0 - 0 - 99 - - -3 6323 6257 6132 189 123 -3.48 0 - - - 99 - 0 +2 6275 6284 6418 141 132 -7.09 0 0 0 - 99 - - -3 6593 6590 6423 168 165 -4.05 0 - - - 99 - 0 +3 6480 6513 6659 177 144 -4.10 0 - - 0 99 - - -3 6797 6761 6639 156 120 -3.62 0 0 - - 99 - 0 +1 6616 6673 6801 183 126 -0.47 0 0 - - 99 - 0 +2 6740 6824 6955 213 129 -6.36 0 - 0 - 99 - - +2 7238 7250 7387 147 135 -2.02 0 - 0 - 99 - - +3 7518 7521 7685 165 162 -8.75 0 0 - 0 99 - - +1 7525 7564 7707 180 141 1.77 0 0 - - 99 - - +3 7686 7719 7862 174 141 -7.05 0 0 - 0 99 - - +1 7933 7969 8094 159 123 -8.82 0 0 - - 99 - - -3 8255 8234 8091 162 141 -4.20 0 0 - - 99 - 0 0013 -1 8700 8565 5923 2775 2640 9.26 99 - - - 99 - - +2 9533 9536 9670 135 132 0.42 0 - 0 - 99 - - +2 9689 9692 9823 132 129 -0.72 0 - 0 - 99 - - -3 9872 9863 9738 132 123 0.62 0 - - - 99 - 0 0014 -1 9948 9909 9253 693 654 7.50 99 - - - 99 - - 0015 +2 9851 9869 10018 165 147 -2.64 99 - 99 - - - - +3 9987 10002 10124 135 120 -1.54 0 - - 0 99 - - -3 10178 10166 10044 132 120 -1.17 0 - - - 99 - 0 +1 10189 10225 10368 177 141 2.59 0 0 - - 99 - - +1 10483 10492 10656 171 162 -2.96 0 0 - - 99 - - -3 10703 10673 10548 153 123 -8.35 0 - - - 99 - 0 +2 10604 10718 10873 267 153 -6.57 0 - 0 - 99 - 0 -3 10913 10844 10704 207 138 -12.68 0 - 0 - 99 - 0 +1 10918 10966 11097 177 129 0.61 0 0 - 0 99 - - +3 10932 10959 11123 189 162 -3.96 0 - - 0 99 - - -3 11144 11129 11007 135 120 -12.49 0 - - - 99 - 0 0016 -1 11175 11148 9949 1224 1197 10.53 99 - - - 99 - - +1 11305 11335 11466 159 129 -10.40 0 0 - 0 - 99 - -1 11571 11508 11386 183 120 -7.26 0 - - 0 0 99 - +3 11199 11241 11591 390 348 -0.91 0 - - 0 - 99 - +3 11592 11652 11807 213 153 -2.98 0 - - 0 - 99 - 0017 -2 11998 11971 11195 801 774 10.67 99 - - - - 99 - 0018 +1 11791 11914 12045 252 129 -1.97 99 99 - - - - -