Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/NZ_CP0540111.369.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/NZ_CP0540111.369.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/NZ_CP0540111.369.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CP0540111.369.AOI_01 Sequence length = 21146 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 244 223 92 150 129 -4.95 0 - 99 - - 0 0 -3 278 248 30 246 216 1.20 0 - 99 - - - 0 +3 117 252 374 255 120 -10.57 0 - 99 0 - - - -1 576 558 436 138 120 -5.92 0 - 99 - 0 0 - -2 580 580 425 153 153 -0.42 0 - 99 - - 0 - +3 645 732 881 234 147 -8.66 0 - 99 0 0 - - 0001 +2 2 65 889 885 822 15.54 99 - 99 - - - - -1 927 858 688 237 168 -6.07 0 - 99 0 0 - - 0002 -2 1366 1297 1121 243 174 4.32 99 - - 0 - 99 - 0003 +3 1068 1077 1373 303 294 1.11 99 - - 99 - - - +3 1374 1416 1565 189 147 -1.63 0 - - 0 - - 99 -2 1984 1957 1820 162 135 -3.37 0 - - - - 0 99 0004 -3 2075 2036 1272 801 762 9.35 99 - - - - - 99 0005 +2 2066 2120 2266 198 144 -1.79 99 - 99 - - - - +1 2239 2263 2406 165 141 -2.07 0 0 - - - - 99 0006 -3 2540 2510 2190 348 318 10.36 99 - - - - - 99 0007 -2 2827 2818 2669 156 147 0.51 99 - - - - 99 - -3 2957 2951 2796 159 153 -4.23 0 99 - - - - 0 +2 2825 2840 2992 165 150 0.31 0 99 0 - 0 - - -1 3063 2961 2821 240 138 2.77 0 99 0 - 0 - 0 -3 3146 3107 2958 186 147 -3.01 0 99 - - - - 0 0008 +2 3134 3167 3298 162 129 4.02 12 87 12 0 - - - -2 3367 3361 3212 153 147 1.22 0 99 - 0 - 0 - +3 3054 3096 3380 324 282 1.41 0 99 - 0 - - - -1 3588 3528 3406 180 120 0.16 0 99 - - 0 - - 0009 +1 2713 2725 3603 888 876 8.23 99 99 - - - - - +2 3617 3686 3817 198 129 -3.28 9 1 9 - - 89 - 0010 -2 3820 3811 3674 144 135 -2.80 24 31 43 - - 24 - 0011 +1 3649 3661 3840 189 177 -3.00 99 99 - - - - - +2 3818 3875 4003 183 126 -0.13 0 - 0 0 - - 99 +3 3798 3837 4064 264 225 -0.65 0 - - 0 - - 99 0012 -3 4337 4331 3771 564 558 8.58 99 - - - - - 99 +1 4120 4135 4341 219 204 -2.03 0 0 - - - - 99 0013 +1 4342 4342 4569 225 225 0.01 99 99 - - - - - +3 4707 4707 4856 147 147 -0.34 0 - - 0 - - 99 +1 5233 5266 5394 159 126 1.46 0 0 - - - - 99 +2 5417 5423 5557 138 132 -3.75 0 - 0 - - - 99 -2 5752 5752 5603 147 147 -1.95 0 - - - - 0 99 -1 5874 5853 5725 147 126 -6.71 0 0 0 - 0 - 99 +1 5716 5743 5883 165 138 -3.61 0 0 0 - - - 99 +2 5645 5756 5947 300 189 -8.56 0 - 0 - - - 99 -2 6130 6091 5921 207 168 -4.26 0 0 - 0 - 0 99 +1 5908 6037 6162 252 123 0.30 7 7 - - - - 92 0014 -3 6293 6254 4374 1917 1878 8.97 99 - - - - - 99 0015 -2 6580 6577 6407 171 168 3.83 99 - - - - 99 - 0016 +3 6624 6648 6803 177 153 4.34 99 - - 99 - - - +3 6807 6894 7061 252 165 2.82 0 - - 0 - - 99 0017 -3 7178 7178 6741 435 435 9.81 99 - - - - - 99 0018 +3 7248 7251 7424 174 171 4.65 99 - - 99 - 0 - 0019 -2 7462 7396 7235 225 159 0.01 99 - - - - 99 - +1 7366 7438 7623 255 183 2.36 0 0 - - - - 99 +3 7584 7587 7787 201 198 -1.59 0 - - 0 - - 99 +1 7654 7669 7806 150 135 -6.82 0 0 - - - 0 99 -2 7903 7774 7598 303 174 -11.07 0 - - 0 - 0 99 -2 8299 8197 8003 294 192 -8.83 0 - - - - 0 99 0020 -3 8462 8429 7263 1197 1164 9.98 99 - - - - - 99 0021 -1 8508 8487 8362 144 123 -3.05 99 - - - 99 - - 0022 -3 9356 9233 9102 252 129 1.66 99 - - - - - 99 -1 9555 9495 9340 213 153 -0.84 0 - 99 - 0 - - +3 9576 9639 9761 183 120 -4.52 0 - 99 0 0 - - -3 9842 9812 9681 159 129 -8.34 0 - 99 - 0 - 0 -1 9948 9909 9556 390 351 0.03 0 - 99 - 0 - - 0023 +2 9149 9176 9952 801 774 7.28 99 - 99 - - - - +1 10003 10018 10140 135 120 -7.75 0 0 - 99 - - - -1 10215 10188 10024 189 162 -4.20 0 - - 99 0 - - -3 10229 10181 10050 177 129 1.27 0 - - 99 0 - 0 +1 10234 10303 10443 207 138 -10.16 0 0 - 99 - 0 - -2 10543 10429 10274 267 153 -7.59 0 0 - 99 - 0 0 +1 10444 10474 10599 153 123 -7.49 0 0 - 99 - - - +2 10529 10535 10714 183 177 -3.04 0 - 0 99 - - - -3 10958 10913 10779 177 132 3.47 0 - - 99 - - 0 +1 10969 10981 11103 132 120 -2.89 0 0 - 99 - - - -1 11160 11145 11023 135 120 -4.79 0 - - 99 0 - - 0024 +3 9972 9999 11198 1224 1197 10.57 99 - - 99 - - - +1 11275 11284 11409 132 123 -0.91 0 0 - 99 - - - -2 11458 11455 11324 132 129 -3.09 0 - - 99 - 0 - -2 11614 11611 11477 135 132 -0.39 0 - - 99 - 0 - 0025 +3 11199 11205 11894 693 687 7.34 99 - - 99 - - - -3 13073 13067 12930 141 135 -4.13 0 - - 99 - - 0 -3 13235 13199 13074 159 123 -5.82 0 - - 99 - - 0 -1 13482 13464 13306 174 156 -4.03 0 - - 99 0 - - -3 13643 13604 13446 195 156 2.23 0 - - 99 - - 0 -1 13650 13632 13483 165 147 -8.53 0 - - 99 0 - 0 -2 13930 13918 13781 147 135 -3.40 0 - - 99 - 0 - -2 14098 14098 13967 129 129 -1.29 0 - - 99 - 0 - -3 14495 14495 14364 129 129 3.42 0 - - 99 - - 0 -1 14688 14685 14512 174 171 0.87 0 - - 99 0 - - +1 14575 14578 14745 168 165 -6.21 0 0 - 99 - - - +2 14669 14699 14827 156 126 -3.46 0 - 0 99 - - 0 -2 14893 14884 14750 141 132 -4.90 0 - - 99 - 0 0 +1 14845 14914 15036 189 120 -1.69 0 0 - 99 - - - -2 15190 15157 14966 222 189 -3.94 0 - - 99 - 0 - -1 15204 15183 15046 156 135 -9.67 0 - - 99 0 0 - 0026 +3 12576 12603 15245 2667 2640 9.83 99 - - 99 - - - -3 15254 15215 15072 180 141 -4.85 0 - 0 99 - - 0 +1 15169 15217 15363 192 144 -1.95 6 6 93 - - - - -2 15931 15865 15731 198 132 -7.38 0 - - - - 0 99 -2 16396 16120 15986 408 132 -9.63 0 0 - - - 0 99 0027 -3 16613 16598 15411 1200 1185 13.95 99 - - - - - 99 0028 +3 16314 16428 16646 330 216 5.40 99 - - 99 - - - 0029 -3 16775 16772 16617 156 153 0.24 99 - - - - - 99 +1 16684 16717 16842 156 123 -0.06 0 0 99 - - - - -3 17117 17096 16971 144 123 -10.29 0 - 99 - - - 0 -2 17449 17440 17276 171 162 -6.29 0 - 99 - - 0 - 0030 +2 16706 16715 17731 1023 1014 11.47 99 - 99 - - - - 0031 +2 17819 17831 18040 219 207 -1.07 99 - 99 - - - - +1 17983 18016 18216 231 198 -5.73 0 0 - 99 - - - 0032 +3 17976 18069 18242 264 171 -0.45 99 - - 99 - - - +3 18246 18438 18626 378 186 4.13 0 - - 0 - - 99 0033 -3 18635 18590 18210 423 378 9.62 99 - - - - - 99 +3 18762 18843 18965 201 120 -2.66 0 - - 0 - - 99 +3 19359 19368 19499 138 129 6.26 0 - - 0 - - 99 +1 19378 19423 19593 213 168 1.02 0 0 - - - - 99 0034 -3 19745 19730 18636 1107 1092 12.01 99 - - - - - 99 0035 +3 19947 19962 20114 165 150 7.18 93 - - 93 - - 6 -1 20469 20469 20344 123 123 -4.11 0 - 99 - 0 - - -2 20683 20626 20477 204 147 -0.01 0 - 99 - - 0 - -1 20808 20721 20569 237 150 2.15 0 - 99 - 0 - - -1 21030 21024 20896 132 126 -6.02 0 - 99 0 0 0 - +3 20859 20961 21140 279 177 -8.31 0 - 99 0 - 0 - -2 21145 21034 20855 288 177 2.55 0 - 99 0 - 0 -