Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/NC_0143701.1.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/NC_0143701.1.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/NC_0143701.1.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_melaninogenica.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NC_0143701.1.AOI_01 Sequence length = 21146 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 2 17 148 144 129 -2.33 0 - 0 - 99 - 0 +1 91 217 423 330 204 -2.10 0 0 - - 99 - - -3 551 545 366 183 177 -8.57 0 - - - 99 - 0 +1 424 433 555 129 120 -0.91 0 0 0 - 99 - 0 +2 695 737 961 264 222 -3.83 0 0 0 - 99 - - -3 1079 1061 930 147 129 -6.90 0 0 - - 99 - 0 +1 556 649 1149 591 498 -0.60 0 0 - - 99 - - +1 1150 1156 1293 141 135 -4.26 0 0 - - 99 - 0 0001 +2 1574 1595 1765 189 168 -3.86 99 - 99 - - - - +1 2032 2038 2184 150 144 -9.78 0 0 - 99 - 0 - -2 2224 2020 1889 333 129 -6.79 0 - - 99 - 0 - +1 2371 2380 2526 153 144 -10.29 0 0 - 99 - 0 0 -3 2540 2381 2187 351 192 -4.41 0 - - 99 - - 0 -2 2593 2479 2225 366 252 -3.04 0 - - 99 - 0 0 -2 2785 2731 2594 189 135 1.29 0 - - 99 - 0 0 +1 2656 2659 2796 138 135 -5.88 0 0 - 99 - - 0 0002 +3 1893 1902 2945 1050 1041 13.54 99 - - 99 - - - -3 2987 2675 2541 444 132 -2.21 0 - - 99 - - 0 -3 3329 3269 3144 183 123 -4.93 0 99 - - 0 - 0 -1 3453 3243 3079 372 162 -1.31 0 99 - - 0 - - -1 3624 3603 3472 150 129 -4.96 0 99 - 0 0 0 - -2 3658 3628 3410 246 216 -0.79 0 99 - - - 0 - +2 3497 3632 3754 255 120 -9.37 0 99 0 - - - - -3 3956 3938 3816 138 120 -6.04 0 99 - - 0 - 0 -1 3960 3960 3805 153 153 -3.51 0 99 - - 0 - - +2 4025 4112 4261 234 147 -9.56 0 99 0 - - - 0 0003 +1 3037 3064 4269 1230 1203 16.10 99 99 - - - - - -3 4307 4238 4068 237 168 -7.82 0 99 0 - - - 0 0004 -1 4746 4677 4501 243 174 1.33 87 - 12 - 87 - - 0005 +2 4448 4592 4753 303 159 2.07 99 - 99 - - - - +2 4754 4796 4945 189 147 -2.19 0 - 0 - - 99 - -1 5364 5337 5200 162 135 -4.23 0 - 0 - 0 99 - 0006 -2 5455 5416 4652 801 762 8.92 99 - - - - 99 - 0007 +1 5446 5449 5619 171 168 -5.83 99 99 - - - - - +1 5620 5644 5787 165 141 -5.59 0 0 - - - - 99 0008 -3 5921 5891 5571 348 318 10.58 99 - - - - - 99 0009 -1 6171 6147 6004 165 141 3.78 99 - - - 99 - - -1 6381 6345 6172 207 171 1.36 0 99 0 - 0 - - +2 6113 6158 6385 270 225 0.04 0 99 0 - - - - -3 6530 6527 6321 207 204 -3.49 0 99 - - - - 0 +3 6501 6507 6644 141 135 -2.31 0 99 - 0 - - - +2 6797 6824 6967 168 141 -0.75 0 99 0 - 0 - - -1 6972 6912 6790 180 120 0.71 0 99 - - 0 - - 0010 +1 6094 6109 6987 891 876 7.06 99 99 - - - - - +1 7033 7045 7179 144 132 -6.06 1 1 - - 98 - - 0011 -1 7182 7173 7036 144 135 -3.46 61 38 - - 61 - - +3 7293 7311 7481 186 168 -8.33 0 - - 0 - 99 - +3 7482 7656 7799 315 141 -6.03 0 - - 0 - 99 - 0012 -2 7870 7819 7133 735 684 9.22 99 - - - - 99 - 0013 +1 7927 7930 8103 174 171 3.19 99 99 - - - - 0 -3 8141 8075 7923 216 150 -1.31 0 99 - - - - 0 +2 8045 8153 8302 255 147 3.83 0 - 0 - 99 - - +1 8263 8266 8466 201 198 -3.85 0 0 - - 99 - - +2 8333 8348 8485 150 135 -7.55 0 - 0 - 99 - 0 -3 8582 8453 8277 303 174 -14.44 0 0 - - 99 - 0 +3 8733 8748 8882 147 132 -4.20 0 - - 0 99 - 0 -3 8978 8876 8682 294 192 -11.52 0 - - - 99 - 0 +2 8810 8822 8998 186 174 -10.65 0 - 0 - 99 - - 0014 -1 9096 9096 7942 1152 1152 10.43 99 - - - 99 - - 0015 +1 9013 9013 9138 123 123 -1.61 99 99 - - - - - 0016 -3 9188 9167 9033 153 132 -2.26 99 - - - - - 99 -3 9947 9938 9810 135 126 -0.40 0 99 - - - - 0 +3 10002 10017 10139 135 120 -9.32 0 - 99 0 - - - -3 10214 10187 10023 189 162 -3.22 0 - 99 - - - 0 -2 10228 10180 10049 177 129 -1.45 0 - 99 - - 0 0 +3 10233 10302 10442 207 138 -10.37 0 - 99 0 0 - - -1 10500 10428 10273 225 153 -8.54 0 - 99 0 0 0 - +3 10443 10473 10598 153 123 -7.05 0 - 99 0 - - - +1 10528 10534 10680 150 144 -2.77 0 0 99 - - - - -2 10957 10921 10778 177 141 3.83 0 - 99 - - 0 - +3 10968 10980 11102 132 120 -4.35 0 - 99 0 - - - -3 11159 11144 11022 135 120 -3.49 0 - 99 - - - 0 0017 +2 9971 9998 11197 1224 1197 11.68 99 - 99 - - - - +3 11274 11283 11408 132 123 -0.54 0 - 99 0 - - - -1 11457 11454 11323 132 129 -3.12 0 - 99 - 0 - - -1 11613 11610 11476 135 132 -0.06 0 - 99 - 0 - - 0018 +2 11198 11204 11893 693 687 7.33 99 - 99 - - - - +2 12890 12911 13054 162 141 -5.87 0 99 0 - 0 - - -1 13212 13176 13051 159 123 -6.82 0 99 - - 0 - - -2 13459 13426 13283 174 141 -3.34 0 99 - - 0 0 - -1 13620 13581 13438 180 141 -0.68 0 99 - - 0 - - -2 13627 13609 13460 165 147 -10.49 0 99 - - 0 0 - +2 13643 13667 13807 162 138 -4.52 0 99 0 - 0 - - -3 14075 14075 13944 129 129 0.23 0 99 - - 0 - 0 -3 14405 14321 14190 213 129 -4.59 0 99 - - - - 0 +2 14348 14384 14506 156 120 -4.20 0 99 0 - 0 - - -1 14529 14472 14344 183 126 -1.74 0 99 0 - 0 - - -2 14665 14662 14486 177 174 -1.74 0 99 - - - 0 - +2 14552 14600 14722 168 120 -4.86 0 99 0 - - - 0 -3 14870 14861 14727 141 132 -6.15 0 99 - - 0 - 0 -3 15167 15134 14943 222 189 -3.70 0 99 - - - - 0 0019 +1 12553 12580 15222 2667 2640 10.38 99 99 - - - - - -1 15315 15192 15049 264 141 -4.51 0 99 - - 0 - - 0020 +2 15113 15194 15340 225 144 -1.84 36 - 36 63 - - - -3 15908 15842 15708 198 132 -11.80 0 - - - 99 - 0 +1 15760 15946 16077 315 129 -4.68 0 0 0 - 99 - - +2 15950 16001 16123 171 120 -6.48 0 - 0 - 99 - 0 -3 16373 16160 15963 408 195 -6.57 0 - - - 99 - 0 0021 -1 16590 16575 15388 1200 1185 15.15 99 - - - 99 - - 0022 +1 16087 16405 16638 549 231 4.55 99 99 - - - - - 0023 -1 16752 16749 16594 156 153 -0.56 99 - - - 99 - - -1 17094 17073 16948 144 123 -6.25 0 - - 99 0 - - +2 17078 17084 17230 150 144 -8.01 0 - 0 99 - - - -3 17426 17417 17253 171 162 -10.78 0 - - 99 - - 0 0024 +3 16683 16692 17708 1023 1014 12.43 99 - - 99 - - - 0025 -3 17954 17954 17826 126 126 0.76 82 17 0 - - - 82 +2 17795 17927 18118 321 189 -7.08 1 98 1 - - - - 0026 +1 17761 17980 18144 381 162 -5.16 99 99 - - - - - 0027 +1 18148 18340 18528 378 186 4.67 52 52 - - 47 - - 0028 -1 18537 18492 18112 423 378 4.69 99 - - - 99 - - +1 18664 18745 18867 201 120 -6.51 0 0 - - 99 - - +1 19261 19270 19401 138 129 4.14 0 0 - - 99 - - +2 19280 19325 19495 213 168 1.51 0 - 0 - 99 - - 0029 -1 19647 19632 18538 1107 1092 12.84 99 - - - 99 - - 0030 +1 19849 19864 20022 171 156 5.95 99 99 - - 0 - - 0031 -3 20114 20093 19941 171 150 3.09 99 - - - - - 99 +2 20399 20405 20554 153 147 -6.03 0 - 0 - 99 - - +3 20517 20532 20684 165 150 -13.89 0 0 - 0 99 - - +1 20428 20461 20718 288 255 -4.36 0 0 - - 99 - - 0032 -1 21075 21054 20152 921 900 9.74 99 - - - 99 - -