Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_JRNO010000911.144.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_JRNO010000911.144.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_JRNO010000911.144.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_JRNO010000911.144.AOI_01 Sequence length = 14682 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 216 183 61 153 120 -5.10 0 - - 99 0 - - -3 281 209 69 210 138 -2.87 0 - - 99 0 - 0 0001 +3 3 108 452 447 342 8.83 99 - - 99 - - - 0002 -2 499 499 302 195 195 -0.05 99 - - - - 99 - 0003 -1 666 657 496 168 159 -2.55 99 - - - 99 - - 0004 -3 719 662 519 198 141 -4.19 27 - - - 72 - 27 0005 +2 560 563 730 168 165 -7.13 99 - 99 - - - - 0006 +2 791 812 1243 450 429 8.86 99 - 99 - - - - 0007 +3 1221 1269 1448 225 177 8.21 99 - - 99 - - 0 -1 1560 1428 1282 276 144 -2.46 0 - - 99 0 - 0 -2 1759 1717 1595 162 120 -6.73 0 - - 99 - 0 0 -3 1766 1700 1476 288 222 -1.38 0 - - 99 - - 0 0008 +3 1449 1518 1841 390 321 3.06 99 - - 99 - - - -1 2010 1977 1816 192 159 -3.83 0 - 99 - 0 0 - 0009 -2 2050 1945 1760 288 183 1.70 99 - - - - 99 - -3 2099 2090 1911 186 177 -4.02 0 - 99 - - - 0 0010 +2 1775 1808 2218 441 408 7.65 99 - 99 - - - - -3 2666 2630 2502 162 126 -0.71 0 99 - - - - 0 -1 3009 2850 2536 471 312 1.89 0 99 - - 0 - - -3 3146 3083 2946 198 135 1.77 0 99 - - - - 0 -3 3371 3335 3147 222 186 -0.83 0 99 - - - - 0 -3 3587 3584 3390 195 192 -2.37 0 99 - - 0 - 0 -1 3603 3564 3385 216 177 3.81 0 99 - - 0 - - +2 3446 3470 3607 159 135 -1.81 0 99 0 - 0 - - 0011 +1 2338 2356 3654 1314 1296 10.21 99 99 - - - - - 0012 -2 3808 3799 3638 168 159 1.68 99 - - - - 99 - -3 4247 4238 4101 144 135 -1.30 0 - 99 - - - 0 0013 +2 3647 3647 4270 621 621 9.21 99 - 99 - - - - -3 4823 4724 4575 246 147 0.84 0 99 - - - - 0 -1 5220 5208 4966 252 240 4.20 0 99 - - 0 - - +2 5057 5117 5335 276 216 0.93 0 99 0 - - - - -3 5570 5513 5364 204 147 -8.32 0 99 - - - - 0 0014 +1 4345 4345 5802 1455 1455 10.57 99 99 - - - - - 0015 -3 5819 5810 5598 219 210 0.82 99 - - - - - 99 0016 -1 5880 5823 5623 255 198 4.74 99 - - - 99 - 0 0017 +2 5945 6068 6196 249 126 6.02 99 - 99 - 0 0 - 0018 -1 6234 6024 5881 351 141 0.06 99 - - - 99 - - -2 6529 6511 6335 192 174 -3.71 0 - - - - 0 99 0019 +1 6469 6481 6630 159 147 3.27 99 99 - - - - - -2 6739 6667 6530 207 135 -5.19 0 - - - 99 0 - +1 6631 6661 6789 156 126 -2.91 0 0 - 77 - - 22 0020 -3 6881 6764 6543 336 219 -1.69 99 - - - - - 99 0021 +3 6618 6627 6896 276 267 2.05 99 - - 99 - - - 0022 -2 7033 7033 6809 222 222 5.09 99 - - - - 99 - 0023 +2 6848 6893 7048 198 153 1.75 92 7 92 - - - - 0024 +2 7130 7187 7315 183 126 2.28 99 - 99 - - - - 0025 -2 7480 7420 7229 249 189 0.34 99 - - - - 99 - -1 7485 7461 7339 144 120 -8.45 0 - - - 0 99 - +3 7380 7428 7565 183 135 -1.18 8 - 0 8 - - 91 +1 7528 7528 7722 192 192 -0.61 0 0 - - - - 99 +3 7566 7695 7946 378 249 -0.12 0 - - 0 - - 99 0026 -3 8081 8072 7374 705 696 2.52 99 - - - - - 99 -3 8219 8204 8082 135 120 -5.64 0 99 - - - - 0 0027 +1 7723 8041 8331 606 288 2.38 99 99 - - - - - 0028 +2 8276 8318 8449 171 129 -1.95 15 - 15 - 68 15 - -2 8593 8359 8105 486 252 -5.09 0 - - - 99 0 - +2 8480 8507 8632 150 123 -3.81 0 - 0 - 99 - 0 -3 8729 8597 8424 303 171 -5.13 0 - - - 99 0 0 +1 8614 8773 9012 396 237 -1.39 0 0 - - 99 - - -2 9034 9001 8810 222 189 -12.44 0 0 - - 99 0 - 0029 -1 9135 9129 8089 1044 1038 2.00 99 - - - 99 - - 0030 +2 8957 9026 9172 213 144 -6.36 99 - 99 - - - - 0031 -3 9500 9455 9216 282 237 -4.29 25 - - - - 74 25 +3 9297 9345 9629 330 282 -8.10 0 0 - 0 99 - - +2 9410 9479 9670 258 189 -5.63 0 0 0 - 99 - - +2 9689 9692 9823 132 129 -5.18 0 0 0 0 99 0 - +3 9630 9723 9875 243 150 -8.05 0 0 - 0 99 - - -3 9884 9863 9738 144 123 -5.80 0 0 - 0 99 - 0 0032 -1 9948 9942 9253 693 687 5.53 99 0 - - 99 - - +3 9987 10041 10202 213 159 -8.13 0 0 - 0 99 - - -2 10465 10306 10139 324 165 -10.59 0 0 - - 99 0 - -3 10478 10415 10290 186 123 -10.43 0 0 - - 99 0 0 0033 +1 9253 9856 10656 1401 798 -0.21 99 99 - - - - - -2 10780 10612 10466 312 144 -8.72 0 0 - - 99 0 - +2 10472 10709 10855 381 144 -6.37 0 - 0 - 99 - 0 -3 10892 10673 10548 342 123 -10.17 0 - 0 - 99 0 0 +1 10717 10852 11136 417 282 1.99 0 0 - - 99 - - -3 11144 11072 10920 222 150 -8.52 0 6 - - 93 - 0 0034 -1 11160 11148 9949 1209 1197 7.94 99 - - - 99 - - +1 11161 11179 11604 441 423 0.72 0 0 0 - 99 - - 0035 +2 11165 11192 11974 807 780 -3.21 0 0 0 - 99 - - +3 11859 11886 12020 159 132 -5.83 0 0 - 0 99 - - 0036 -1 12078 12045 11161 915 882 4.46 99 - - - 99 - - 0037 +1 11668 11806 12093 423 285 1.07 99 99 - - - - - -1 12495 12459 12325 168 132 -8.55 0 - - 99 0 - - 0038 +3 12309 12339 12551 240 210 3.46 99 - - 99 - - - 0039 +2 12500 12515 12661 159 144 -0.42 79 - 79 - - 20 - -2 12667 12652 12509 156 141 -1.85 8 - 91 - - 8 - 0040 +3 12552 12636 12791 237 153 -2.76 99 - - 99 - - - 0041 +3 12792 12798 12926 132 126 -3.42 99 - - 99 - - - 0042 -3 13094 13082 12903 189 177 6.06 99 - - - - - 99 0043 -1 13212 13164 13036 174 126 2.13 17 - 72 - 17 9 - -2 13438 13411 13001 435 408 0.64 0 - 99 - - 0 - 0044 +2 12986 13049 13957 969 906 4.70 99 - 99 - - - - -1 13962 13827 13642 318 183 -8.13 0 - 99 - 0 0 - -2 14050 13771 13439 609 330 0.67 0 - 99 - - 0 - 0045 -3 14150 14099 13941 207 156 1.50 99 - - - - - 99 0046 +1 14050 14071 14208 156 135 6.18 25 25 - - 74 - - 0047 -1 14208 14154 13990 216 162 2.75 99 - - - 99 - 0 0048 +2 14333 14366 14524 189 156 -0.37 99 - 99 - - - - +1 14416 14479 14649 231 168 -4.83 0 0 - - 99 - 0