Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_ATWK010000141.94.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_ATWK010000141.94.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_ATWK010000141.94.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_ATWK010000141.94.AOI_01 Sequence length = 14769 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +3 141 153 365 222 210 -5.28 0 - 99 0 - - - 0001 -2 424 397 227 195 168 -11.54 99 - - - - 99 - 0002 -1 453 402 262 189 138 -5.96 99 - - - 99 0 - -1 729 708 583 144 123 -0.78 0 99 - 0 0 - - 0003 +1 571 625 789 216 162 0.82 99 99 0 - - - - 0004 +2 629 680 838 207 156 -7.38 99 - 99 - - - - +1 817 952 1137 318 183 -9.33 0 0 - 0 - - 99 0005 +3 729 732 1340 609 606 -4.74 99 - - 99 - - - +1 1567 1615 1743 174 126 -7.31 9 9 - 89 - - 0 +3 1341 1368 1778 435 408 -3.39 0 - - 0 - - 99 0006 -3 1793 1649 822 969 825 3.77 99 - - - - - 99 0007 +2 1685 1697 1876 189 177 -4.64 99 - 99 - - - - 0008 -2 1987 1981 1853 132 126 -7.62 99 - - - - 99 - 0009 -3 2147 2132 1956 189 174 2.52 99 - - - - - 99 -2 2224 2110 1988 234 120 -1.66 2 - - - - 2 97 0010 +1 2101 2116 2259 156 141 -1.74 46 46 - - 53 - - 0011 -1 2268 2253 2107 159 144 -0.86 42 57 - - 42 - - 0012 +3 2289 2295 2438 147 141 0.50 96 - 0 96 - - 3 +2 2273 2309 2443 168 132 -10.95 0 - 0 - - - 99 0013 -3 2459 2429 2217 240 210 -1.92 99 - - - - - 99 0014 +2 2459 2579 2752 291 171 -8.18 99 - 99 - - - - -1 2910 2883 2749 159 132 -11.03 0 - - 98 0 - 1 0015 -3 3164 2963 2676 486 285 -2.26 99 - - - - - 99 0016 -2 3604 3577 2795 807 780 1.32 0 - - 99 - 0 - 0017 +3 2691 2724 3608 915 882 9.28 99 - - 99 - - - -3 3608 3584 3165 441 417 3.77 0 - - 99 - 0 0 +1 3625 3697 3849 222 150 -2.77 0 0 - 99 - - 0 -3 4052 3917 3633 417 282 3.45 0 - - 99 - - 0 +1 3877 4096 4221 342 123 -10.04 0 0 0 99 - 0 - -2 4297 4279 3914 381 363 -0.72 0 - - 99 - 0 - +2 3989 4157 4303 312 144 -15.07 0 - 0 99 - - 0 +1 4291 4351 4479 186 126 -3.82 0 0 0 99 - - 0 +2 4355 4463 4630 273 165 -24.25 0 - 0 99 - - 0 -1 4782 4728 4567 213 159 -21.71 0 - - 99 0 - 0 0018 +3 3609 3621 4820 1209 1197 13.35 99 - - 99 - - - 0019 -2 4918 4897 4751 165 144 5.28 99 - - - - 99 0 +1 4885 4906 5031 144 123 -1.96 0 0 - 99 0 - 0 -2 5080 5077 4946 132 129 2.57 0 - 0 99 0 0 0 -1 5139 5046 4894 243 150 -11.02 0 - - 99 0 - 0 -2 5359 5356 5099 258 255 2.76 0 - - 99 - 0 0 -1 5472 5424 5140 330 282 -9.51 0 - - 99 0 - 0 0020 +3 4821 4827 5516 693 687 13.30 99 - - 99 - - 0 0021 -3 5516 5378 4113 1401 1263 0.51 99 - - - - - 99 0022 +1 5269 5314 5553 282 237 -1.10 99 99 0 - - - - 0023 -2 5812 5743 5597 213 144 -1.94 99 - - - - 99 - +1 5644 5746 5910 264 162 -1.00 0 0 0 99 - - - +2 5750 5780 5959 207 177 -22.54 0 - 0 99 - - 0 -3 6155 5996 5757 396 237 2.61 0 - - 99 - - 0 -2 6289 6274 6137 150 135 2.34 0 0 - 99 - 0 - +1 6040 6172 6345 303 171 -3.83 0 0 0 99 - - - 0024 -2 6493 6460 6320 171 138 6.40 95 - 0 4 - 95 - +2 6176 6410 6664 486 252 -4.00 0 - 0 99 - - - 0025 +3 5634 5640 6680 1044 1038 8.26 99 - - 99 - - - 0026 +1 6550 6565 6687 135 120 -5.64 23 23 - - - - 76 0027 -3 7046 6728 6438 606 288 -3.16 99 - - - - - 99 -3 7241 7241 7047 192 192 3.99 0 99 - - 0 - 0 -1 7389 7062 6823 564 237 -0.86 0 99 - - 0 - - 0028 +1 6688 6697 7395 705 696 7.18 99 99 - - - - - +3 7275 7308 7430 153 120 -14.31 0 - 99 0 - - - 0029 +2 7289 7349 7549 258 198 -0.31 99 - 99 - - - - 0030 +1 7570 7624 7749 177 123 1.52 99 99 0 0 - - - 0031 +3 7431 7566 7847 414 279 -3.79 99 - - 99 - - - 0032 -1 7902 7836 7645 255 189 0.70 99 - - 0 99 - - -1 8451 8340 8161 288 177 -13.35 0 - - - 0 99 - +2 8300 8411 8566 264 153 -1.85 0 0 0 - - 99 - +2 8567 8612 8743 174 129 0.55 0 - 0 - - 99 - +3 8634 8634 8840 204 204 -1.59 0 - - 0 - 99 - +2 8744 8939 9319 573 378 -1.02 0 - 0 - - 99 - -1 9465 9393 9199 264 192 -9.32 0 - - - 0 99 - +3 9411 9456 9593 180 135 -0.02 0 - 0 0 - 99 - +3 9627 9687 9851 222 162 0.78 0 0 0 0 - 99 0 +1 9598 9601 9870 270 267 -16.27 0 0 0 - - 99 0 +2 9320 9326 9958 636 630 1.86 0 - 0 - - 99 - -1 10125 9978 9853 270 123 -9.30 0 - - 0 0 99 0 0033 -2 10141 10084 7775 2364 2307 11.22 99 - - - - 99 - 0034 +1 10063 10087 10233 168 144 -1.50 14 14 - - - - 85 0035 -3 10349 10160 9552 795 606 -7.95 99 - - - - - 99 +1 10234 10243 10371 135 126 -1.61 0 0 - 0 - 99 - 0036 -1 10398 10398 10267 129 129 1.06 47 - - 0 47 52 - +3 10095 10257 10409 312 150 -5.34 0 - - 0 - 99 - 0037 -2 10531 10423 10223 306 198 -2.94 99 - - - - 99 - +1 10438 10447 10584 144 135 -18.13 0 0 - 99 - - - +1 10585 10609 10740 153 129 -8.06 0 0 - 99 - - 0 -3 10814 10733 10524 288 207 -1.52 0 - - 99 - - 0 0038 +3 10416 10425 11057 639 630 7.89 99 - - 99 - - - -3 11078 11021 10818 258 201 4.74 0 - - 99 - - 0 0039 +1 10933 10966 11094 159 126 -5.82 99 99 - - - - - 0040 -1 11169 11163 10993 174 168 -5.78 99 - - - 99 - - 0041 -1 11436 11307 11170 264 135 -2.50 99 - - - 99 0 - 0042 -2 11533 11386 11087 444 297 -3.61 99 - - - - 99 - 0043 +2 11189 11228 11677 486 447 11.40 99 - 99 - - - - -1 11694 11634 11437 255 195 2.47 0 - 99 - 0 - - 0044 -3 11957 11957 11703 252 252 0.16 99 - - - - - 99 0045 -1 12138 11850 11722 414 126 4.16 99 - - - 99 - 0 +2 11969 12011 12157 186 144 -2.95 0 99 0 0 - 0 - -2 12211 12133 11924 285 207 -18.80 0 99 - - 0 0 - -3 12263 12215 12093 168 120 -2.71 0 99 - - - 0 0 0046 +1 11728 11737 12312 582 573 9.51 99 99 - - - - - -1 12321 12270 12139 180 129 -0.61 0 99 - - 0 - - +3 12204 12369 12578 372 207 -1.82 0 - - 0 - 99 - -1 12627 12504 12379 246 123 -5.22 0 - - 0 0 99 - +2 12512 12560 12907 393 345 3.74 0 - 0 - - 99 - +1 12748 12793 12963 213 168 -13.88 0 0 - - - 99 - -1 13023 12969 12841 180 126 -1.25 0 - - - 0 99 - +2 12908 12941 13075 165 132 1.64 0 - 0 - - 99 - +3 13008 13014 13151 141 135 -1.25 0 0 - 0 - 99 - 0047 -2 13156 13123 12344 810 777 10.01 99 - - - - 99 - +1 12964 13102 13314 348 210 -8.53 0 0 99 - - - - -1 13347 13335 13201 144 132 -3.58 0 - 0 - 0 99 - +3 13275 13287 13448 171 159 -0.72 0 - 0 0 - 99 - +2 13106 13229 13504 396 273 -0.59 0 - 0 - - 99 - +1 13423 13489 13662 237 171 -14.57 0 0 - - - 99 - +3 13557 13557 13694 135 135 0.13 0 - 0 0 - 99 0 -3 13712 13697 13551 159 144 -9.44 0 - 0 - - 99 0 +2 13505 13610 13870 363 258 -2.97 0 - 0 - - 99 - +3 13803 13827 13955 150 126 5.60 0 0 - 0 - 99 0 -3 14048 13868 13713 333 153 -16.65 0 - 0 - - 99 0 -1 14247 14223 14008 237 213 -5.55 0 - 0 - 0 99 - +1 14071 14101 14331 258 228 -9.78 0 0 0 - - 99 - +2 13871 14240 14377 504 135 3.21 0 - 0 - - 99 - 0048 -2 14575 14566 13193 1380 1371 10.44 99 - - - - 99 - 0049 +2 14378 14423 14602 222 177 -1.68 99 - 99 - - - - 0050 +3 14463 14511 14660 195 147 -0.41 99 - - 99 - - - 0051 -1 14769 14724 14584 183 138 6.09 99 - - - 99 - -