Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_ATWK010000131.96.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_ATWK010000131.96.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_ATWK010000131.96.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_ATWK010000131.96.AOI_01 Sequence length = 21107 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 2 29 301 297 270 -18.66 0 - 0 99 - - 0 +1 379 406 540 159 132 -11.29 0 0 0 99 - - 0 0001 +2 326 479 1258 930 777 -15.16 0 - 0 99 - - 0 0002 +3 3 78 1448 1443 1368 15.38 99 - - 99 - - - 0003 -3 1460 1451 1317 141 132 6.11 99 - - - - - 99 0004 -2 1525 1471 1346 177 123 -6.89 99 - - - - 99 - +2 1652 1673 1813 159 138 -12.15 0 - 0 - 99 - - +2 1814 1880 2017 201 135 -15.98 0 - 0 - 99 - - +1 2056 2083 2301 243 216 -0.63 0 0 - - 99 - - +1 2302 2449 2622 318 171 -0.05 0 0 - - 99 - 0 +2 2486 2573 2731 243 156 -14.62 0 - 0 - 99 - - +1 2623 2749 2886 261 135 -5.99 0 0 0 0 99 - - +3 2718 2739 2900 180 159 -20.61 0 - 0 0 99 - - +2 2732 2831 2983 249 150 -16.77 0 - 0 - 99 - - +1 2887 2989 3159 270 168 -2.90 0 0 - - 99 - - 0005 -1 3294 3075 1597 1695 1476 3.87 99 - - - 99 - - 0006 -1 3483 3417 3295 186 120 -12.43 99 - - - 99 - - +3 3498 3549 3680 180 129 -7.58 0 - - 0 - 99 - 0007 -2 3832 3721 3404 426 315 -0.10 99 - - - - 99 - 0008 +3 3681 3714 3845 162 129 -7.81 99 - - 99 - - - +1 4051 4051 4203 150 150 -8.03 0 0 - - - - 99 +1 4327 4438 4581 252 141 -16.74 0 0 - 98 - - 1 0009 +3 4314 4497 4628 312 129 -5.95 33 - - 33 - - 66 0010 -3 4637 4367 3999 636 366 -1.16 99 - - - - - 99 +3 4734 4950 5078 342 126 -16.05 0 0 0 0 99 0 - +2 4832 4958 5098 264 138 1.48 0 0 0 - 99 0 - -3 5330 5249 5112 216 135 -15.03 0 0 - - 99 - 0 +2 5261 5333 5509 246 174 1.01 0 0 0 - 99 - - 0011 +1 4624 4879 5730 1104 849 1.83 0 0 - - 99 - - +2 5633 5657 5797 162 138 -3.09 0 - 0 - 99 - 0 -3 5861 5804 5643 216 159 -4.43 0 - - - 99 - 0 +1 5731 5764 5982 249 216 5.97 0 0 - - 99 - - 0012 -1 6018 6000 4675 1341 1323 13.44 99 - - - 99 - - +3 5832 6048 6245 411 195 -3.20 0 - 0 0 - 99 - 0013 -2 6361 6196 5990 369 204 10.30 99 - 0 0 - 99 - 0014 +3 6246 6318 6479 231 159 8.57 99 0 0 99 - - - 0015 +2 5963 6260 6562 597 300 2.13 92 7 92 - - - - 0016 +1 6250 6250 6870 618 618 0.97 99 99 - - - - - -3 6923 6866 6741 180 123 -11.62 0 0 - - 99 - 0 +1 6871 6892 7164 291 270 3.61 0 0 - - 99 - - +2 7190 7199 7471 279 270 1.43 0 0 0 - 99 - - -3 7514 7469 7332 180 135 -2.56 0 0 0 - 99 - 0 +2 7472 7580 7741 267 159 3.90 0 0 0 - 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0 - - 99 -2 10534 10396 10250 282 144 -12.58 0 0 - 0 - 0 99 +1 10441 10474 10620 177 144 3.62 0 0 - 0 0 - 99 +1 10648 10681 10842 192 159 2.29 0 0 - 0 - - 99 -2 10900 10867 10730 168 135 -18.03 0 - - 0 - 0 99 0019 -3 11123 11117 9993 1128 1122 15.62 99 - - 0 - - 99 0020 +3 9915 10197 11144 1227 945 2.18 99 - - 99 - - - 0021 +2 10919 11117 11302 381 183 -3.48 35 64 35 - - - - -2 11371 11272 11150 219 120 -5.13 0 8 28 0 62 0 - 0022 +1 11014 11242 11613 597 369 2.92 99 99 - - - - 0 -3 11636 11540 11229 405 309 -1.62 0 99 - - - - 0 +2 11411 11498 11656 243 156 4.97 0 - 0 - 99 0 - +3 11508 11610 11792 282 180 -17.41 0 0 - 0 99 0 - +1 11614 11620 11814 198 192 -0.48 0 0 - - 99 0 - -2 11827 11629 11471 354 156 -8.76 0 - 0 - 99 0 0 -3 12041 12014 11820 219 192 -6.26 0 0 - - 99 - 0 -2 12175 12142 11828 345 312 -5.74 0 0 - - 99 0 - 0023 -1 12180 12171 11299 879 870 13.23 99 - - - 99 - - 0024 +2 12038 12044 12187 147 141 4.56 99 0 99 0 - - - 0025 +1 11815 11971 12204 387 231 0.55 99 99 - - - - - 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99 - - - - 0031 +3 15087 15141 15272 183 129 -8.00 99 - - 99 - - - +2 15566 15590 15736 168 144 1.91 0 0 0 - 99 0 - +1 15148 15166 15756 606 588 4.91 0 0 - - 99 - - -2 16021 15580 15383 636 195 -18.46 0 0 - - 99 0 - +1 15757 15760 16119 360 357 4.68 0 0 - - 99 - - +3 15978 15981 16124 144 141 -18.66 0 - - 0 99 - - +3 16125 16128 16289 162 159 -16.45 0 0 - 0 99 0 0 -3 16289 16208 16011 276 195 -8.15 0 - - - 99 - 0 +3 16290 16293 16466 174 171 -12.15 0 0 - 0 99 - - 0032 -1 16722 16653 15163 1557 1488 13.64 99 - - - 99 - - 0033 +1 16132 16138 16767 633 627 3.92 99 99 - - - - - 0034 +2 16592 16598 16774 180 174 -7.15 99 - 99 - - - - +1 16768 16771 16902 132 129 3.69 0 0 - - 0 - 99 -2 16969 16951 16823 144 126 -2.27 0 - - 94 0 0 5 -1 17010 16911 16741 267 168 -7.19 0 - - - 0 - 99 0035 -3 17075 17069 16650 423 417 8.46 99 - - - - - 99 0036 +3 16797 16941 17111 312 168 -6.28 99 - - 99 - - - +2 17117 17129 17263 144 132 0.53 0 0 0 - 99 0 - -3 17450 17372 17238 210 132 -12.29 0 0 - - 99 - 0 +1 17098 17113 17493 393 378 2.61 0 0 - 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