Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_AEXO010001131.67.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_AEXO010001131.67.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_AEXO010001131.67.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_AEXO010001131.67.AOI_01 Sequence length = 17763 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 267 162 34 231 126 -4.84 0 99 0 - 0 - 0 0001 -3 350 317 159 189 156 0.98 99 - - - - - 99 0002 -2 742 742 611 129 129 -0.95 99 - - - - 99 - +2 779 800 925 144 123 -2.86 0 0 0 - 99 - - +1 706 745 960 252 213 0.93 0 0 - - 99 - - +3 951 963 1112 159 147 -8.21 0 - - 0 99 - - -3 1256 1241 1104 150 135 -6.38 0 0 - - 99 - 0 +2 1193 1229 1429 234 198 -4.20 0 1 0 - 98 - - -3 1448 1397 1257 189 138 1.46 0 2 0 - 97 - 0 +1 973 1282 1473 498 189 1.47 10 10 - - 89 - - 0003 -1 1761 1755 616 1143 1137 4.98 99 - - - 99 - - 0004 -3 1793 1790 1668 123 120 7.03 99 - - - - - 99 -2 2038 2014 1742 294 270 4.93 2 - - 97 - 2 - +2 1889 1907 2044 153 135 -1.88 0 - 0 99 - - - +1 2272 2275 2418 144 141 -0.81 0 0 0 99 - - - +2 2255 2300 2446 189 144 -2.42 0 - 0 99 - - - -2 2716 2626 2357 357 267 3.48 0 - - 99 - 0 - 0005 +3 1698 1722 3128 1428 1404 5.52 99 - - 99 - - - 0006 -1 3408 3408 3277 129 129 -2.81 99 - - - 99 - - 0007 -3 3617 3584 3282 333 300 9.02 99 - - - - - 99 0008 +3 3372 3411 3626 252 213 4.48 99 - - 99 - - - 0009 -2 3757 3757 3581 174 174 4.60 99 - - - - 99 - +3 3813 3948 4133 318 183 -8.08 0 - 1 0 - 98 - 0010 +2 3725 3728 4336 609 606 -0.72 99 - 99 - - - - +3 4563 4611 4739 174 126 2.09 1 - 5 1 - 93 - +2 4337 4364 4774 435 408 0.82 0 - 0 - - 99 - 0011 -2 4789 4726 3818 969 906 3.34 99 - - - - 99 - 0012 +1 4681 4693 4872 189 177 8.37 99 99 - - - - - 0013 -1 4983 4977 4849 132 126 -0.62 99 - - - 99 - - 0014 -1 5220 5106 4984 234 120 -4.52 99 - - - 99 - - 0015 +3 5097 5112 5255 156 141 -2.67 28 - - 28 - - 71 0016 -3 5264 5249 5103 159 144 -1.80 64 - - 35 - - 64 +1 5269 5305 5439 168 132 -9.33 0 0 - - - 99 - 0017 -2 5455 5425 5213 240 210 2.68 99 - - - - 99 - -2 5905 5878 5744 159 132 -3.70 0 99 - - 0 0 - 0018 -1 6096 5958 5671 423 285 -0.17 99 - - - 99 - - 0019 -3 6599 6572 5790 807 780 -5.01 0 99 - - 0 - 0 0020 +1 5686 6358 6603 915 243 2.94 99 99 - - 0 - 0 0021 -1 6603 6585 6160 441 423 -1.67 13 86 - - 13 - 0 +2 6620 6692 6844 222 150 -7.07 0 50 0 - 49 - - 0022 -1 7047 6912 6628 417 282 -0.87 55 44 - - 55 - - +2 6872 7091 7216 342 123 -10.36 0 99 0 0 - - 0 -3 7292 7055 6909 381 144 -7.82 0 99 0 - - - 0 +3 6984 7152 7298 312 144 -9.99 0 98 - 0 1 - - +2 7286 7349 7474 186 123 -8.79 0 30 0 0 69 - - +3 7299 7458 7625 324 165 -9.15 0 93 - 0 6 - - -2 7777 7723 7562 213 159 -7.77 0 99 - - 0 0 - 0023 +1 6604 7570 7815 1209 243 3.42 99 99 - - 0 - - +2 7880 7901 8026 144 123 -5.49 0 99 0 - 0 0 - -3 8075 8072 7941 132 129 -6.41 0 99 - 0 0 0 0 -2 8134 8041 7889 243 150 -7.71 0 99 - - 0 0 - -3 8354 8285 8094 258 189 -5.10 0 99 - - 0 - 0 -2 8467 8419 8135 330 282 -7.64 0 99 - - 0 0 - 0024 +1 7816 7822 8511 693 687 2.59 99 99 - - 0 - - 0025 -1 8511 8373 7108 1401 1263 -2.75 0 99 - 0 0 - 0 +2 8264 8309 8548 282 237 -4.88 6 - 6 93 - - - 0026 -3 8807 8738 8592 213 144 -3.89 99 - - - - - 99 +3 8730 8763 8954 222 189 -10.43 0 99 - 0 0 - - -1 9150 8916 8752 396 162 -4.24 1 98 - 0 1 - - 0027 -3 9284 9257 9132 150 123 -6.34 16 83 0 - - - 16 +2 9035 9167 9340 303 171 -5.93 9 72 9 17 - - - 0028 -3 9488 9446 9315 171 129 -0.89 54 7 - 37 - - 54 0029 +3 9171 9405 9659 486 252 -3.72 78 21 - 78 - - - 0030 +1 8629 8635 9675 1044 1038 -2.34 0 0 - - 99 - - +2 9545 9560 9682 135 120 -4.71 0 - 0 - 99 - - 0031 -1 10041 9723 9433 606 288 2.86 99 - - - 99 - - -1 10236 10236 10042 192 192 -2.27 0 - 94 - 0 5 - -2 10384 10069 9818 564 249 -3.07 0 - 99 - - 0 - 0032 +2 9683 9851 10390 705 537 0.11 99 - 99 - - - - +1 10270 10303 10425 153 120 -6.98 0 0 - 99 - - - 0033 +3 10284 10344 10520 234 174 0.71 99 - - 99 - - - 0034 +2 10421 10451 10573 150 120 3.24 92 7 92 - - - - 0035 -3 10961 10916 10761 198 153 3.58 93 - - - 6 - 93 0036 +3 10776 10776 11000 222 222 5.85 99 - - 99 - - - -1 11178 11148 11020 156 126 -3.09 0 - 0 - 0 99 - 0037 -2 11191 11182 10913 276 267 4.28 99 - - - - 99 - 0038 +2 10928 11045 11266 336 219 -1.50 99 - 99 - - - - +3 11070 11142 11279 207 135 -4.89 0 99 - 0 - - - 0039 -1 11340 11328 11179 159 147 4.19 99 - - - 99 - - +3 11280 11298 11474 192 174 -0.97 0 - 99 0 - - - 0040 -3 11864 11741 11613 249 126 8.18 99 0 - 0 - - 99 0041 +1 11575 11596 11928 351 330 3.04 99 99 - - - - - 0042 +1 11929 11986 12186 255 198 7.54 99 99 0 - - - - 0043 +2 11990 11999 12211 219 210 2.14 99 - 99 - - - - +2 12239 12296 12445 204 147 -7.37 0 - 0 - 99 - - -3 12752 12692 12474 276 216 1.83 0 - - - 99 - 0 +1 12589 12601 12843 252 240 5.46 0 0 - - 99 - - +2 12986 13085 13234 246 147 3.54 0 - 0 - 99 - - 0044 -1 13464 13464 12007 1455 1455 11.20 99 - - - 99 - - +2 13562 13571 13708 144 135 0.29 0 - 0 - - - 99 0045 -3 14162 14162 13539 621 621 10.14 99 - - - - - 99 0046 +3 14001 14010 14171 168 159 1.64 99 - - 99 - - - -3 14363 14339 14202 159 135 0.18 0 0 - - 99 - 0 +2 14222 14225 14419 195 192 -1.07 0 0 0 - 99 - - +1 14206 14245 14424 216 177 6.79 0 0 - - 99 - - +2 14438 14474 14662 222 186 0.17 0 - 0 - 99 - - +2 14663 14726 14863 198 135 5.83 0 - 0 - 99 - - +1 14800 14959 15273 471 312 2.23 0 0 - - 99 - - +2 15143 15179 15307 162 126 0.39 0 - 0 - 99 - - 0047 -1 15471 15453 14155 1314 1296 10.70 99 - - - 99 - - +2 15710 15719 15898 186 177 -2.53 0 - 0 - - - 99 +1 15799 15832 15993 192 159 -3.44 0 0 - 73 - - 26 0048 -3 16034 16001 15591 441 408 3.13 99 - - - - - 99 0049 +3 15759 15864 16049 288 183 2.65 99 - - 99 - - - +3 16050 16092 16214 162 120 -5.81 0 - 0 0 - 99 - +2 16043 16109 16333 288 222 -2.42 0 - 0 - - 99 - 0050 -2 16360 16291 15968 390 321 3.12 99 - - - - 99 - +1 16249 16330 16527 276 195 -1.11 0 0 99 - - - - 0051 -2 16588 16540 16361 225 177 6.77 99 - 0 - - 99 - 0052 -3 17018 16997 16566 450 429 8.48 99 - - - - - 99 0053 -3 17249 17246 17079 168 165 -4.68 99 - - - - - 99 0054 +2 17090 17147 17290 198 141 -2.92 12 87 12 - - - - 0055 +1 17143 17152 17313 168 159 -0.32 99 99 - - - - - 0056 +3 17310 17310 17507 195 195 -0.31 99 - - 99 - - - +2 17528 17600 17740 210 138 -4.33 0 0 0 - - 99 - +1 17593 17608 17748 153 138 -0.76 0 0 - - - 99 - 0057 -2 17761 17701 17357 402 342 8.02 99 - - - - 99 -