Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_AEXO010000811.26.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_AEXO010000811.26.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/NZ_AEXO010000811.26.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_denticola.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_AEXO010000811.26.AOI_01 Sequence length = 21101 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 49 79 207 156 126 -6.27 0 0 99 0 0 - - -1 213 183 61 150 120 -0.22 0 0 99 0 0 - - +3 3 72 230 225 156 -7.88 0 - 99 0 - - - 0001 +2 2 38 499 495 459 11.05 99 - 99 - - - - -2 583 457 101 480 354 0.13 0 - 99 - - 0 - -3 779 773 528 249 243 -4.52 0 99 - - - - 0 0002 +1 490 550 807 315 255 11.93 99 99 - - - - - +2 692 692 832 138 138 -10.67 0 - 0 99 - - - 0003 -3 962 902 780 180 120 4.17 99 - - 0 - - 99 -3 1091 1088 963 126 123 -0.21 0 99 - - 0 - 0 -1 1347 1266 808 537 456 3.13 0 99 - - 0 - - +3 1269 1341 1478 207 135 -12.13 0 99 - 0 - - - -1 1524 1482 1348 174 132 4.82 0 99 - - 0 - - +2 1685 1721 1873 186 150 -9.22 0 99 0 - 0 - - -3 1937 1889 1725 210 162 -6.92 0 99 - - 0 - 0 -1 1962 1791 1651 309 138 4.12 0 99 - - 0 - - +2 1874 2018 2206 330 186 -5.23 0 99 0 - 0 - 0 -3 2360 2285 1938 420 345 0.06 0 99 - - - - 0 -1 2490 2424 1963 525 459 0.97 0 99 - - 0 - - 0004 +1 808 829 2637 1827 1806 10.13 99 99 - - - - - +2 2612 2627 2776 162 147 -3.84 0 - 0 99 - 0 0 -2 2827 2758 2555 270 201 -4.73 0 - - - - 0 99 0005 +3 2577 2637 2978 399 339 4.48 99 - - 99 - - - +3 2988 2988 3128 138 138 -0.68 0 84 - 0 - - 15 0006 -3 3191 3119 2793 396 324 -0.30 99 - - - - - 99 +2 3113 3131 3256 141 123 -11.12 0 99 0 0 0 - - +2 3353 3425 3556 201 129 -8.18 0 99 0 0 0 - - 0007 +1 2968 3016 3618 648 600 12.31 99 99 - - - - - 0008 -1 3747 3711 3412 333 297 5.64 99 - - - 99 - - +3 3675 3732 3866 189 132 -8.33 0 - 99 0 - 0 - -1 3987 3975 3844 141 129 1.72 0 0 99 - 0 0 - -2 4006 3991 3611 393 378 3.03 0 - 99 - - 0 - 0009 +2 3581 3644 4072 489 426 12.23 99 - 99 - - - - +1 4135 4153 4281 144 126 -3.60 0 0 0 25 - - 74 0010 -3 4307 4163 3993 312 168 -5.06 99 - - - - - 99 -2 4336 4333 4202 132 129 4.44 0 - 0 99 - 0 - +2 4094 4193 4363 267 168 -6.57 0 - 0 99 - - - 0011 +3 4029 4035 4454 423 417 7.18 99 - - 99 - - - 0012 -1 4512 4506 4330 180 174 -9.32 99 - - - 99 - - -3 4814 4811 4638 174 171 -10.36 0 - 99 - - 0 0 0013 -2 4972 4966 4337 633 627 3.63 99 - - - - 99 - -3 4979 4976 4815 162 159 -14.59 0 0 99 0 - 0 0 +3 4815 4896 5093 276 195 -6.47 0 - 99 0 - - - -3 5126 5123 4980 144 141 -18.20 0 - 99 - - - 0 -2 5347 5344 4985 360 357 4.20 0 - 99 - - 0 - -1 5538 5532 5368 168 162 3.10 0 0 99 - 0 0 - +1 5083 5524 5721 636 195 -15.59 0 0 98 - - 1 - 0014 +2 4382 4451 5941 1557 1488 8.71 99 - 99 - - - - -2 5956 5938 5348 606 588 4.53 0 - 99 - - 0 - 0015 -3 6017 5963 5832 183 129 -7.83 99 - - - - - 99 +2 5942 6020 6184 240 162 -5.86 0 99 0 - 0 - 0 -3 6209 6155 6018 189 135 2.15 0 99 0 0 0 - 0 0016 -1 6357 6306 5896 459 408 1.32 99 - - - 99 - - +2 6482 6497 6646 162 147 -13.41 0 99 0 - 0 - - -3 6851 6818 6627 222 189 1.77 0 99 - - 0 - 0 +2 6791 6932 7054 261 120 -9.30 0 99 0 0 0 - - +2 7055 7136 7264 207 126 -8.36 0 99 0 - 0 - - -3 7409 7337 7215 192 120 2.10 0 99 - 0 0 - 0 0017 +1 5914 5938 7440 1524 1500 13.43 99 99 - - - - - 0018 -1 7452 7344 6358 1092 984 1.77 0 99 - - 0 - - 0019 -2 7633 7606 7376 255 228 -4.16 99 - - - - 99 - +1 7582 7810 7974 390 162 -3.33 0 0 0 37 - - 62 -2 7975 7966 7817 156 147 1.87 0 0 0 11 - 0 88 +1 7984 7993 8166 180 171 -6.32 0 0 0 99 - - 0 -2 8179 8176 8021 156 153 1.96 0 - 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- 99 - 0 - -1 12930 12900 12709 219 189 -11.71 0 - - 99 0 - 0 -2 13075 13069 12890 183 177 3.03 0 - - 99 - 0 0 -2 13294 13276 13097 195 177 7.68 0 - 0 99 - 0 0 -2 13630 13522 13361 267 159 3.95 0 - 0 99 - 0 0 +2 13028 13595 13762 732 165 -8.58 0 0 0 99 - - 0 +1 13588 13633 13770 180 135 -2.02 0 0 - 95 - 0 4 -2 13912 13903 13631 279 270 1.96 0 - - 99 - 0 0 0032 -3 13937 13814 12651 1284 1161 2.24 0 - - 99 - - 0 -3 14231 14210 13938 291 270 5.25 0 - - 99 - - 0 +1 14179 14236 14361 180 123 -10.42 0 0 - 99 - - 0 0033 +3 11055 11106 14636 3579 3528 10.28 99 - - 99 - - - -3 14852 14483 14232 618 249 2.65 0 - - 99 - - 0 0034 -1 14856 14856 14623 231 231 5.34 46 - 53 - 46 0 0 +1 14704 14713 14931 225 216 -0.24 0 0 99 - - 0 - 0035 +2 14582 14633 15112 528 477 6.83 99 - 99 - - 0 - 0036 -2 15139 14866 14540 597 324 0.41 99 - - - - 99 - -1 15270 15054 14857 411 195 -1.83 0 - 99 - 0 0 - +1 15241 15298 15459 216 159 -3.39 0 0 - 99 - - 0 -2 15469 15439 15305 162 132 -2.25 0 0 - 99 - 0 0 -2 15841 15769 15593 246 174 2.11 0 - 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99 - - - - 0047 -2 19072 19009 18824 246 183 -2.21 99 - - - - 99 - 0048 +3 18873 18993 19127 252 132 -9.91 99 - - 99 - - - 0049 +2 19217 19253 19378 159 123 -4.56 99 - 99 - - - - 0050 +1 19264 19273 19407 141 132 6.69 99 99 - - - - - -2 20329 19750 19589 738 159 -17.70 0 0 - - 99 0 0 -3 20345 20333 20184 159 147 -5.68 0 0 - - 99 0 0 0051 +1 19408 19468 20619 1209 1149 2.82 0 0 - - 99 - - +2 20582 20723 20878 294 153 1.78 0 1 0 0 98 0 - +3 20670 20754 20924 252 168 -12.10 0 6 - 0 93 0 - 0052 +2 20933 20957 21079 144 120 7.24 89 0 89 - 9 0 - +1 20620 20827 21090 468 261 3.17 0 0 - - 99 0 - -2 21100 21001 20633 465 366 -8.00 0 0 - - 99 0 - 0053 -1 21099 21075 19276 1821 1797 9.03 99 - - - 99 - -