Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZDB010000121.1194.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZDB010000121.1194.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZDB010000121.1194.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_VZDB010000121.1194.AOI_01 Sequence length = 21140 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 49 64 198 147 132 -12.92 0 0 - 99 - - 0 0001 +3 3 42 239 234 195 9.73 99 - - 99 - - 0 -3 710 470 330 378 138 -6.24 0 99 - - - - 0 -2 907 796 653 252 141 -6.40 0 99 - - 0 0 - +2 758 830 991 231 159 -8.91 0 99 0 - 0 - - -1 1023 726 394 627 330 0.59 0 99 - - 0 - - -3 1097 1079 900 195 177 -7.17 0 99 - - - - 0 -3 1238 1220 1098 138 120 0.56 0 99 - - 0 - 0 +2 1151 1286 1420 267 132 -12.49 0 99 0 - 0 - - 0002 +1 334 346 1548 1212 1200 14.45 99 99 - - - - - -3 1607 1412 1290 315 120 -16.30 0 99 0 - 0 - 0 -1 2064 2022 1762 300 258 -1.11 0 99 - - 0 - - -3 2126 2084 1959 165 123 -1.52 0 99 - - - - 0 -1 2559 2520 2173 384 345 5.19 0 99 - - 0 - - 0003 +1 1612 1624 2670 1056 1044 10.71 99 99 - - - - - 0004 -2 2800 2761 2630 168 129 4.68 99 - - - - 99 - +3 2691 2712 3275 582 561 1.40 0 - - 0 - - 99 -2 3424 3415 3272 150 141 -11.47 0 - - 0 - 0 99 0005 -3 3482 3470 2706 774 762 9.74 99 - - - - - 99 +3 3498 3501 3668 168 165 -7.61 0 99 - 0 - - - 0006 +1 3505 3508 3687 180 177 1.28 99 99 - - - - - -2 3742 3685 3536 204 147 -7.98 0 0 - - 99 0 - +2 3581 3611 3748 165 135 -9.61 0 - 0 - 99 - - 0007 -1 3870 3852 3532 336 318 8.95 99 - - - 99 - - +3 3981 4008 4202 219 192 3.62 0 - - 0 - - 99 +1 4108 4135 4296 186 159 1.38 0 0 - - 0 - 99 -1 4341 4254 4069 270 183 -0.89 0 - - - 0 - 99 +2 4229 4253 4390 159 135 -11.06 0 - 0 - - - 99 0008 -3 4655 4643 3954 699 687 11.67 99 - - - - - 99 +1 4303 4483 4659 354 174 -4.43 0 0 - - - - 99 -3 5003 4961 4833 168 126 -14.43 0 0 - - 99 0 0 -3 5246 5213 5007 237 204 -10.82 0 0 - - 99 - 0 +2 5105 5132 5260 153 126 -6.76 0 0 0 - 99 - - +1 4663 4840 5289 624 447 4.00 0 0 - - 99 - - +1 5398 5398 5637 237 237 -3.71 0 0 - 0 99 - - +3 5391 5391 5654 261 261 -7.13 0 - - 0 99 - - 0009 -1 5772 5754 4696 1074 1056 10.21 99 - - - 99 - - +2 5843 5855 5980 135 123 -7.84 0 0 0 - 99 - - +3 6213 6225 6365 150 138 -8.48 0 0 - 0 99 - - +1 5770 5977 6375 603 396 0.25 0 0 - - 99 - - 0010 -1 6417 6384 5818 597 564 7.54 99 - - - 99 - - 0011 -3 6728 6716 6582 144 132 -6.91 99 - - - - - 99 0012 +3 6597 6606 6761 162 153 4.49 99 - - 99 - - - 0013 -1 6897 6879 6676 219 201 -1.11 99 - - - 99 - - 0014 +3 6762 6810 7013 249 201 2.73 99 - - 99 - - - 0015 -3 7103 7088 6906 195 180 0.50 99 - - - - - 99 +2 7055 7082 7207 150 123 -9.98 0 93 0 - 6 - - -3 7298 7247 7113 183 132 -12.59 0 99 - - 0 - 0 +2 7298 7352 7483 183 129 -9.40 0 99 0 - 0 - - 0016 +1 6985 7051 7722 735 669 6.03 99 99 - - 0 - - 0017 -1 7779 7701 6997 780 702 1.69 0 99 - - 0 - - -3 8036 7754 7632 402 120 -5.99 1 - - - 87 11 1 +3 7848 7857 8063 213 204 -3.08 0 - 99 0 - 0 - -2 8272 8044 7775 495 267 5.43 0 - 99 - - 0 - -3 8372 8366 8193 177 171 -10.27 0 - 99 - - - 0 -1 8427 8412 8254 171 156 -5.94 0 - 99 - 0 - - +3 8277 8301 8459 180 156 -14.40 0 - 99 0 - 0 - -1 8565 8550 8428 135 120 -11.56 0 - 97 - 0 2 0 -2 8866 8809 8273 591 534 0.99 0 - 99 - - 0 - -1 8925 8901 8773 150 126 -7.18 0 - 99 - 0 - - 0018 +2 7739 7766 8929 1188 1161 6.90 99 - 99 - - - - -1 9552 9243 9007 543 234 3.27 0 99 - - 0 - - -3 9563 9512 9369 192 141 -4.06 0 99 - - 0 - 0 +2 9524 9638 9808 282 168 -10.30 0 99 0 - - - - 0019 +1 8863 8935 9930 1065 993 10.30 99 99 - - - - - 0020 -1 9996 9975 9721 273 252 3.16 99 - - - 99 - - 0021 +2 9842 9896 10021 177 123 -4.53 99 - 99 - - - - -1 10281 10254 10090 189 162 -3.72 0 - - 99 0 - 0 -3 10313 10295 10077 234 216 2.13 0 - - 99 - - 0 -2 10495 10483 10292 201 189 -8.39 0 - - 99 - 0 - +2 10385 10400 10558 171 156 -5.65 0 - 0 99 - - 0 -2 10651 10630 10496 153 132 -7.40 0 - - 99 - 0 0 -3 10976 10814 10314 660 498 2.00 0 - - 99 - - 0 +1 10897 10960 11088 189 126 -0.37 0 0 - 99 0 - - 0022 +3 9990 9999 11147 1155 1146 12.43 99 - - 99 - - - -3 11189 11144 10977 210 165 4.07 0 - - 99 0 - 0 -1 11205 11067 10921 282 144 -1.01 0 0 - 99 0 - - 0023 +1 11089 11110 11235 144 123 1.95 99 99 - - - - - 0024 +1 11503 11509 11646 141 135 -2.81 99 99 - - - - - +3 11616 11742 11864 246 120 -10.96 0 - 25 0 - 74 - 0025 +2 11660 11687 12028 366 339 2.70 99 - 99 - - 0 - 0026 -2 12046 11761 11612 432 147 2.60 99 - - 0 - 99 - 0027 +3 11997 11997 12152 153 153 -6.19 99 - - 99 - - - +2 12065 12143 12409 342 264 4.25 0 - 0 - - 99 - +3 12312 12351 12479 165 126 -7.96 0 - - 0 - 99 - +3 12654 12744 12926 270 180 -11.00 0 - 0 0 - 99 - +2 12410 12449 12946 534 495 2.18 0 - 0 - - 99 - 0028 -2 13363 13327 12047 1314 1278 6.72 99 - - - - 99 - +1 13300 13435 13560 258 123 -10.09 0 0 0 0 0 - 99 +3 13338 13431 13700 360 267 0.47 0 - - 0 - - 99 +1 13903 14005 14169 264 162 -1.62 0 0 - 0 - - 99 0029 -3 14279 14258 13296 981 960 8.17 99 - - - - - 99 0030 +3 13701 13776 14294 591 516 1.07 99 - - 99 - - - +2 14663 14681 14887 222 204 -11.97 0 - 0 - - - 99 -1 14979 14934 14791 186 141 -9.73 0 - - - 0 - 99 -2 15046 14983 14861 183 120 -13.25 0 - - 0 0 0 99 +3 14817 14826 15152 333 324 1.54 0 - - 0 - - 99 -2 15541 15472 15284 255 186 -6.49 0 - - - 0 0 99 +3 15348 15408 15545 195 135 -2.13 0 - - 0 - 0 99 0031 -3 15605 15602 14316 1287 1284 9.24 99 - - - - - 99 0032 +1 15424 15493 15630 204 135 -6.88 99 99 - - - - - 0033 +3 15546 15579 15725 177 144 0.81 99 - - 99 - - - 0034 +3 15771 15801 15977 204 174 -4.86 99 - - 99 - - - +2 15932 15935 16072 138 135 -7.12 0 0 0 - 99 0 - -2 16264 16012 15857 405 153 -4.13 0 - - - 99 0 - -3 16538 16406 16284 252 120 -3.66 0 - - - 99 - 0 +1 16453 16528 16695 240 165 -1.30 0 0 - - 99 - - +2 16727 16733 16888 159 153 -5.45 0 - 0 - 99 - - 0035 -1 17013 16992 15838 1173 1152 10.18 99 - - - 99 - - 0036 +1 16822 16852 17076 252 222 -2.18 99 99 - - - - - 0037 +2 16889 16976 17152 261 174 2.21 99 - 99 - - - - 0038 -1 17169 17169 17035 132 132 -2.31 99 - - - 99 - - 0039 -1 17625 17610 17443 180 165 9.16 99 - - - 99 - - 0040 -3 17765 17756 17616 147 138 -4.98 99 - - - - - 99 +1 17857 17914 18051 192 135 4.87 0 0 0 - 99 - - +2 17834 17921 18106 270 183 -3.34 0 - 0 - 99 - - +1 18187 18214 18381 192 165 1.16 0 0 - - 99 - - -3 18542 18458 18315 225 141 0.82 0 - - - 99 - 0 +2 18473 18554 18736 261 180 -1.95 0 - 0 - 99 - - +2 18740 18743 18874 132 129 -3.60 0 - 0 - 99 - - 0041 -1 18927 18921 17785 1140 1134 11.66 99 - - - 99 - - 0042 -2 19021 18991 18869 150 120 -4.81 99 - - - - 99 - +2 19268 19271 19480 210 207 0.25 0 - 0 - - 99 - +3 19491 19509 19694 201 183 -2.45 0 - - 0 - 99 - -3 19823 19784 19566 255 216 -7.79 0 - - - - 99 0 +1 19714 19807 20058 342 249 -8.83 0 0 - - - 99 - -3 20666 20642 20460 204 180 -1.64 0 - - - - 99 0 0043 -2 20707 20656 19040 1665 1614 11.64 99 - - - - 99 - -1 21138 21054 20926 210 126 -2.44 3 - 96 - 3 - -