Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZCS010001621.1363.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZCS010001621.1363.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZCS010001621.1363.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_VZCS010001621.1363.AOI_01 Sequence length = 21143 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 -2 487 475 197 288 276 6.52 99 - - - - 99 - +1 499 562 714 213 150 -4.99 0 0 - - 99 - 0 0002 -1 852 729 472 378 255 8.13 99 - - - 99 - - -2 1072 1072 881 189 189 -3.84 0 - - 0 - 0 99 +3 885 918 1097 210 177 -1.64 0 - - 0 - - 99 +2 935 995 1126 189 129 3.55 0 - 0 - - - 99 +3 1233 1254 1556 321 300 -0.80 0 - - 0 - - 99 -2 1942 1930 1760 180 168 -9.77 0 - - 0 - 0 99 0003 -3 2054 2054 858 1194 1194 8.65 99 - - - - - 99 0004 +3 1764 1977 2111 345 132 -0.20 97 - - 97 - 2 - 0005 -2 2167 2098 1952 213 144 -3.37 24 - - 75 - 24 - +2 2210 2348 2470 258 120 -3.73 0 - 0 0 - 99 - +1 2425 2431 2640 213 207 -1.58 0 0 - - - 99 - +2 2537 2552 2731 192 177 -4.34 0 - 0 0 - 99 - +3 2556 2601 2747 189 144 -2.94 0 - - 0 - 99 - 0006 -2 2899 2887 2204 693 681 8.33 99 - - - - 99 - -3 2906 2843 2670 234 171 -0.10 0 - - - - 99 0 +1 2722 2728 2910 186 180 2.35 1 1 - - - - 98 0007 +3 2748 2760 2966 216 204 3.20 99 - - 99 - - - -1 3462 3396 3244 216 150 -3.99 0 - 0 - 0 99 - +3 3390 3396 3545 153 147 -9.14 0 - 0 0 - 99 - +2 2972 3557 3682 708 123 2.58 3 - 3 - - 96 - +1 3655 3664 3792 135 126 2.39 0 0 - - - 99 - -1 4041 3927 3763 276 162 -4.93 0 - 0 - 0 99 - +2 3713 3866 4045 330 177 -6.19 0 - 0 - 0 99 - -1 4389 4326 4198 189 126 -1.39 0 - - - 0 99 - 0008 -2 4471 4444 2900 1569 1542 6.50 99 - - - - 99 - 0009 +3 4335 4335 4481 144 144 -1.10 99 - - 99 - - - 0010 -3 4781 4541 4410 369 129 2.70 99 - - - - - 99 -3 5171 5117 4989 180 126 -5.88 0 0 - - 99 - 0 0011 +1 4498 4630 5562 1062 930 -1.60 0 0 - - 99 - - +2 5474 5483 5605 129 120 -6.23 0 - 0 - 99 - - +3 5577 5589 5738 159 147 -6.78 0 0 - 0 99 - - -3 6008 5969 5826 180 141 -9.08 0 0 - - 99 - 0 +3 5955 5955 6176 219 219 -2.29 0 - - 0 99 - - 0012 -1 6312 6306 4498 1812 1806 10.86 99 - - - 99 - - -1 6546 6483 6340 204 141 -3.00 0 - - - 0 99 - -1 6816 6759 6622 192 135 -9.19 0 - 0 - 0 99 - +3 6792 6804 6926 132 120 -15.49 0 - 0 0 - 99 - +2 6410 6926 7111 699 183 -1.33 0 - 0 - - 99 - +3 7254 7302 7472 216 168 -9.14 0 - - 0 - 99 - -1 7560 7494 7348 210 144 -8.17 0 - 0 - 0 99 - -1 7728 7686 7561 165 123 -3.46 0 - - - 0 99 - +2 7760 7823 8017 255 192 1.08 0 - 0 - - 99 - +2 8081 8084 8455 372 369 0.62 0 - 0 - - 99 - -1 8571 8568 8443 126 123 -0.97 0 - - - 0 99 - +2 9068 9290 9526 456 234 -1.26 0 - 0 - - 99 - 0013 -2 9580 9520 6326 3252 3192 15.02 99 - - - - 99 - 0014 +1 9700 9739 10002 300 261 -2.19 99 99 - - - - - 0015 -2 10054 10033 9887 165 144 -1.17 99 - - - - 99 - +3 9894 9999 10166 270 165 2.76 0 - 0 0 - - 99 +2 9968 10076 10222 252 144 2.31 0 - 0 - - 0 99 -2 10246 10183 10055 189 126 0.57 0 - 0 - - 0 99 +2 10274 10313 10471 195 156 -2.41 0 - 0 - - - 99 +3 10374 10488 10691 315 201 1.06 0 - - 0 - - 99 -1 10758 10743 10585 171 156 -6.26 0 - - - 0 - 99 +1 10648 10660 10851 201 189 -11.00 0 0 - - - - 99 -2 10924 10846 10700 222 144 -19.47 0 0 - - - 0 99 +2 10862 10913 11053 189 138 -2.42 0 - 0 0 - - 99 +3 10830 10848 11066 234 216 4.20 0 - - 0 - - 99 0016 -3 11153 11144 9996 1155 1146 12.68 99 - - - - - 99 -2 11299 11269 11141 156 126 -8.76 0 - - 99 - 0 - 0017 +3 11067 11166 11420 351 252 4.07 99 - - 99 - - - +1 11578 11638 11772 192 132 -6.86 0 0 0 0 - - 99 +3 11589 11949 12134 543 183 4.43 0 - - 0 - - 99 0018 -3 12278 12206 11211 1065 993 10.30 99 - - - - - 99 +3 12216 12222 12368 150 144 -6.53 0 - - 0 - 99 - +3 12579 12591 12713 132 120 -10.21 0 0 0 0 - 99 - -1 12864 12810 12682 180 126 -16.01 0 - 0 - 0 99 - +2 12275 12356 12868 591 510 0.10 0 - 0 - - 99 - +3 12714 12729 12887 171 156 -9.39 0 - - 0 - 99 - +1 12769 12775 12948 177 171 -9.08 0 0 - - - 99 - -1 13329 13200 13078 249 120 -10.66 0 - 0 - 0 99 - +2 12869 13097 13366 495 267 2.63 0 - 0 - - 99 - 0019 -2 13402 13375 12212 1188 1161 7.02 99 - - - - 99 - -2 13858 13789 13658 198 129 -8.83 0 - - 0 - 0 99 -2 14086 14059 13934 150 123 -10.86 0 - - 0 - 0 99 0020 +3 13362 13440 14144 780 702 -0.72 0 - - 0 - - 99 0021 -3 14156 14153 13419 735 732 7.56 99 - - - - - 99 0022 +1 14038 14089 14247 207 156 -4.10 99 99 - - - - - 0023 -1 14280 14253 14128 150 123 1.92 99 - - - 99 - - 0024 +3 14205 14217 14345 138 126 -3.93 99 - - 99 - - - 0025 -3 14378 14357 14232 144 123 5.22 99 - - - - - 99 0026 +2 14243 14261 14464 219 201 1.08 99 - 99 - - - - 0027 -3 14543 14534 14379 162 153 5.23 99 - - - - - 99 0028 +3 14412 14424 14558 144 132 -8.36 99 - - 99 - - - -3 14927 14915 14775 150 138 -7.80 0 - 45 - - 54 0 -1 15297 15285 15160 135 123 -8.89 0 - 99 - 0 0 - 0029 +2 14723 14756 15322 597 564 9.11 99 - 99 - - - - 0030 -2 15370 15334 14765 603 567 4.54 99 - - - - 99 - -2 15742 15742 15503 237 237 -7.05 0 - 99 - - 0 0 -3 15749 15719 15486 261 231 -6.72 0 - 99 - - - 0 -1 16035 16008 15880 153 126 -7.00 0 - 99 - 0 0 - +3 16137 16179 16307 168 126 -14.23 0 0 98 0 - 1 - 0031 +2 15368 15386 16444 1074 1056 8.88 99 - 99 - - - - -2 16477 16300 15851 624 447 2.54 0 - 99 - - 0 - -2 16837 16657 16481 354 174 -3.40 0 - - 99 - 0 - -1 16911 16887 16750 159 135 -10.77 0 - - 99 0 - - -2 17032 16972 16844 186 126 1.64 0 - - 99 - 0 - +2 16880 16886 17071 189 183 -3.62 0 - 0 99 - - - -3 17159 17132 16938 219 192 4.55 0 0 - 99 - - 0 0032 +3 16485 16497 17186 699 687 8.93 99 - - 99 - - - -2 17560 17530 17393 165 135 -5.85 0 - 0 99 - 0 - +2 17342 17456 17605 261 147 -7.82 0 - 0 99 - - 0 0033 +3 17187 17289 17609 420 318 7.22 99 - - 99 - - - 0034 -3 17636 17633 17454 180 177 -1.09 99 - - - - - 99 -1 17643 17640 17473 168 165 -5.96 0 - - - 0 - 99 +2 17717 17726 17869 150 141 -8.32 0 99 0 - 0 - - 0035 +1 17659 17671 18435 774 762 8.14 99 99 - - - - - -1 18456 18123 17866 588 255 2.95 0 99 - - 0 - - +2 18671 18710 19057 384 345 0.91 0 - 0 - - 99 - +3 19104 19119 19271 165 150 -3.03 0 - - 0 - 99 - +2 19166 19208 19468 300 258 -6.70 0 - 0 - - 99 - 0036 -2 19618 19606 18560 1056 1044 12.07 99 - - - - 99 - +3 19623 19818 19940 315 120 -13.34 0 - 0 0 0 99 - -1 20079 19947 19810 267 135 -10.89 0 - 0 - 0 99 - +3 19992 20010 20132 138 120 -2.96 0 - 0 0 - 99 - +3 20133 20151 20330 195 177 -7.88 0 - - 0 - 99 - -1 20472 20412 20239 231 171 -9.78 0 - 0 - 0 99 - +1 20323 20338 20577 252 237 -2.71 0 0 0 - - 99 - +2 20207 20705 20836 627 129 -1.34 0 - 0 0 - 99 - 0037 -2 20902 20884 19682 1218 1200 10.15 99 - - - - 99 - +3 20520 20760 20906 384 144 -5.69 0 - - 0 - 99 - 0038 -3 21143 21119 20922 219 195 8.73 99 - - 0 - - 99