Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZCO010000471.1424.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZCO010000471.1424.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZCO010000471.1424.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_VZCO010000471.1424.AOI_01 Sequence length = 21140 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +2 2 110 307 303 195 10.96 99 - 99 - - 0 - -2 709 469 323 384 144 -8.61 0 - - 99 - 0 - -3 749 725 393 354 330 2.31 0 - - 99 - - 0 -1 906 795 652 252 141 -7.96 0 - - 99 0 - - +1 757 829 990 231 159 -11.44 0 0 - 99 - - 0 -3 1022 884 750 270 132 -1.74 0 - - 99 0 - 0 -2 1096 1078 899 195 177 -9.61 0 - - 99 - 0 - -2 1237 1219 1097 138 120 -0.38 0 - - 99 - 0 0 +1 1150 1339 1473 321 132 -11.95 0 0 - 99 - 0 0 0002 +3 327 345 1547 1218 1200 14.15 99 - - 99 - - - -2 1606 1411 1289 315 120 -15.84 0 0 - 99 - 0 0 -3 2063 2021 1761 300 258 -1.73 0 - - 99 - - 0 -2 2125 2083 1958 165 123 0.90 0 - - 99 - 0 - -3 2558 2519 2172 384 345 4.32 0 - - 99 - - 0 0003 +3 1611 1623 2669 1056 1044 10.57 99 - - 99 - - - 0004 -1 2799 2760 2629 168 129 3.86 99 - - - 99 - - +2 2690 2711 3274 582 561 1.27 0 - 0 - - 99 - -1 3423 3414 3271 150 141 -12.29 0 - 0 - 0 99 - 0005 -2 3481 3469 2705 774 762 5.05 99 - - - - 99 - 0006 +2 3497 3500 3667 168 165 -7.93 99 - 99 - - - - -1 3741 3684 3535 204 147 -9.51 0 - - - 0 - 99 +1 3580 3610 3747 165 135 -8.80 0 0 - - - - 99 0007 -3 3953 3851 3531 420 318 10.14 99 - - - - - 99 +3 3981 4008 4202 219 192 4.18 0 - - 0 - 0 99 +1 4108 4168 4296 186 126 -0.63 0 0 - - 0 - 99 -1 4341 4254 4069 270 183 -5.71 0 - - - 0 - 99 +2 4229 4253 4390 159 135 -11.43 0 - 0 - - - 99 0008 -3 4655 4643 3954 699 687 12.16 99 - - - - - 99 +1 4303 4483 4659 354 174 -6.47 0 0 - - - - 99 -3 5003 4961 4833 168 126 -16.47 0 0 - - 99 0 0 -3 5246 5213 5007 237 204 -12.64 0 0 - - 99 - 0 +2 5105 5132 5260 153 126 -7.29 0 0 0 - 99 - - +1 4663 4840 5289 624 447 4.82 0 0 - - 99 - - +1 5398 5398 5637 237 237 -0.88 0 0 - 0 99 - - +3 5391 5391 5654 261 261 -7.59 0 - - 0 99 - - 0009 -1 5772 5754 4696 1074 1056 10.81 99 - - - 99 - - +2 5843 5855 5980 135 123 -8.94 0 10 0 - 89 - - +3 6213 6225 6365 150 138 -9.68 0 26 - 0 73 - - 0010 +1 5770 5806 6375 603 567 7.01 99 99 - - - - - 0011 -1 6417 6384 5818 597 564 7.78 99 - - - 99 - - 0012 -3 6728 6716 6582 144 132 -5.57 99 - - - - - 99 0013 +3 6597 6606 6761 162 153 2.26 99 - - 99 - - - 0014 -1 6897 6807 6676 219 129 -3.38 99 - - - 99 - - 0015 +3 6762 6783 6908 144 123 0.10 99 - - 99 - - - 0016 +2 6842 6887 7012 168 123 -3.75 99 - 99 - - - - 0017 -2 7102 7087 6893 207 192 -2.31 99 - - - - 99 - +1 7054 7081 7206 150 123 -9.32 0 0 - 98 - - 1 -2 7297 7246 7112 183 132 -11.50 0 - - 98 - 0 1 +1 7282 7351 7482 198 129 -10.86 0 0 - 99 - - 0 0018 +3 6984 7050 7721 735 669 6.59 99 - - 99 - - 0 0019 -3 7778 7700 6996 780 702 1.85 0 - - 99 - - 0 -2 7942 7753 7631 309 120 -6.93 0 - - - 2 0 97 +2 7811 7826 8062 249 234 -3.11 0 99 0 - 0 - - -1 8271 8043 7774 495 267 5.56 0 99 - - 0 - - -2 8371 8365 8192 177 171 -9.67 0 99 - - - 0 - -3 8426 8411 8253 171 156 -5.98 0 99 - - - - 0 -3 8564 8549 8427 135 120 -12.29 0 99 - - 0 0 0 -1 8865 8808 8389 474 417 2.95 0 99 - - 0 - - -3 8924 8918 8772 150 144 -6.18 0 99 - - - - 0 0020 +1 7738 7765 8928 1188 1161 6.33 99 99 - - - - - -3 9551 9242 9006 543 234 4.62 0 - - 99 - - 0 -2 9562 9511 9368 192 141 -6.37 0 - - 99 - 0 0 +1 9613 9637 9807 192 168 -10.09 0 0 - 99 - - 0 0021 +3 8862 8934 9929 1065 993 11.06 99 - - 99 - - - 0022 -3 9995 9974 9552 441 420 3.76 99 - - - - - 99 0023 +1 9841 9895 10020 177 123 -8.15 99 99 - - - - - -3 10280 10229 10089 189 138 -7.55 0 - 99 - - 0 0 0024 -2 10312 10294 9926 384 366 -0.25 99 - - - - 99 - +3 10218 10296 10442 222 144 -20.52 0 - 99 0 0 - - -1 10494 10482 10291 201 189 -11.29 0 - 99 - 0 - - -1 10650 10629 10495 153 132 -11.67 0 - 99 - 0 0 - -3 10868 10829 10671 195 156 -5.05 0 - 99 - - 0 0 -2 10975 10813 10313 660 498 3.03 0 - 99 - - 0 - +3 10896 10959 11087 189 126 -2.52 0 - 99 0 - - 0 0025 +2 9989 9998 11146 1155 1146 11.94 99 - 99 - - - - -2 11188 11143 10976 210 165 3.89 0 - 99 - - 0 0 -3 11204 11066 10920 282 144 -1.56 0 - 99 0 - - 0 0026 +3 11088 11109 11234 144 123 -0.04 99 - - 99 - - - +2 11291 11297 11428 135 129 -7.76 0 - 0 99 - - - +1 11314 11347 11526 210 177 -9.59 0 0 - 99 - - - 0027 +3 11298 11403 11540 240 135 -3.48 99 - - 99 - - - +3 11625 11667 11810 183 141 -4.04 0 - 99 0 - - - +1 11788 11827 11988 198 159 -7.74 0 0 0 - - 99 - +2 11648 11951 12196 546 243 2.16 0 - 0 - - 99 - -1 12495 12486 12358 135 126 -9.38 0 - 0 - 0 99 - +2 12491 12614 12826 333 210 0.51 0 - 0 - - 99 - -1 12897 12894 12772 123 120 -11.96 0 - - - 0 99 - +3 12837 12930 13055 216 123 -8.80 0 - 0 0 - 99 - +2 12827 12863 13117 288 252 5.04 0 - 0 - - 99 - 0028 -2 13180 13171 11696 1482 1473 10.56 99 - - - - 99 - +1 13033 13303 13581 546 276 1.79 0 0 - - 99 - - +2 13505 13616 13747 240 129 -4.80 0 - 0 0 99 - 0 +2 13748 13802 14005 255 201 -8.74 0 0 0 - 99 - - +3 13899 13929 14054 153 123 -9.51 0 0 - 0 99 - - +3 14058 14100 14258 198 156 -12.86 0 0 - 0 99 0 - -3 14417 14345 14217 198 126 -10.85 0 71 - - 28 0 0 +2 14297 14345 14518 219 171 -2.51 0 0 0 - 99 0 - 0029 +1 13669 13711 14547 876 834 0.97 0 0 - - 99 - - -2 14623 14272 14084 537 186 -9.58 0 0 - - 99 0 - +1 14548 14590 14763 213 171 0.26 0 0 - - 99 - - -2 14875 14761 14624 249 135 -11.33 0 0 - - 99 0 - 0030 -3 14900 14900 14748 150 150 0.58 90 - - - 9 - 90 0031 -1 14952 14850 13210 1740 1638 6.15 99 - - - 99 - - +3 14946 14958 15098 150 138 -5.86 0 99 - 0 - - - 0032 +1 14962 14989 15222 258 231 3.53 99 99 - - - - - +2 15173 15230 15385 210 153 -7.36 0 - 0 - 99 - - +3 15465 15489 15662 195 171 -16.40 0 0 - 0 99 - - +1 15343 15382 15684 339 300 4.69 0 0 - - 99 - - -3 15782 15770 15642 138 126 -8.09 0 - 0 - 99 - 0 +2 15602 15731 15859 255 126 -9.90 0 - 0 - 99 - - 0033 -1 16182 16047 15019 1161 1026 9.03 99 - - - 99 - - 0034 -2 16273 16201 15998 273 201 -5.27 99 - - - - 99 - +2 16232 16319 16492 258 171 -9.98 0 0 0 - 99 - - +1 16270 16363 16632 360 267 2.67 0 0 - - 99 - - +2 16829 16937 17101 270 162 -2.31 0 0 0 - 99 - - 0035 -1 17211 17190 16228 981 960 12.62 99 - - - 99 - - 0036 +1 16633 16708 17370 735 660 1.09 99 99 - - - - - 0037 -3 17549 17378 17193 354 183 -4.29 99 - - - - - 99 +2 17297 17429 17734 435 303 4.10 0 - 0 - - 99 - +3 17592 17592 17750 156 156 -3.49 0 - - 0 - 99 - -3 18005 17960 17817 186 141 -10.74 0 - - - - 99 0 -1 18072 18009 17887 183 120 -13.83 0 - 0 - 0 99 0 +2 17843 17852 18178 333 324 2.20 0 - 0 - - 99 - +2 18374 18389 18544 168 153 -1.42 0 - 0 - - 99 0 0038 -2 18631 18628 17342 1287 1284 10.41 99 - - - - 99 - 0039 +3 18450 18462 18692 240 228 -2.85 99 - - 99 - - - 0040 -2 19447 19435 19196 249 237 1.58 99 - - - - 99 - +3 19410 19503 19628 216 123 -8.99 0 - - 0 - 99 - +1 19603 19636 19782 177 144 -4.19 0 0 - - - 99 - 0041 -2 19801 19669 19448 351 219 -0.23 99 - - - - 99 - 0042 +3 20007 20025 20180 171 153 -12.46 99 - - 99 - - - 0043 -1 20250 20241 20098 150 141 -9.32 99 - - - 99 - - 0044 +2 20225 20276 20485 258 207 2.54 99 - 99 - - - - -1 20502 20463 20317 183 144 -8.03 0 - 99 - 0 - - 0045 -3 20699 20612 20466 231 144 -3.21 99 - - - - - 99 0046 +1 20596 20839 21000 402 159 6.17 99 99 - - 0 - -