Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZCE010000381.1506.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZCE010000381.1506.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZCE010000381.1506.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_VZCE010000381.1506.AOI_01 Sequence length = 21140 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +2 2 95 223 219 126 -1.83 14 - 14 - 85 - - +3 483 507 689 204 180 -1.98 0 99 - 0 - - - +2 1280 1289 1414 132 123 -10.29 0 99 0 - - 0 - -2 1435 1105 902 531 201 -6.98 0 99 - - - 0 - -1 1518 1455 1315 201 138 0.85 0 99 - - 0 - - +3 1326 1365 1583 255 216 -9.04 0 99 - 0 - - - -3 1658 1640 1455 201 183 -1.80 0 99 - - - - 0 -1 1881 1878 1669 210 207 2.08 0 99 - - 0 - - 0002 +1 442 517 2109 1665 1590 12.62 99 99 - - - - - 0003 +1 2128 2158 2280 150 120 -5.75 99 99 - - - - - -1 2409 2406 2275 132 129 -4.06 0 - 99 - 0 - - -1 2676 2595 2413 261 180 -4.20 0 - 99 - 0 - - +3 2685 2691 2834 147 141 0.98 0 - 99 0 - - - -2 2962 2935 2768 192 165 0.45 0 - 99 - - 0 - -2 3292 3235 3098 192 135 4.42 0 - 99 - 0 0 - -1 3315 3228 3043 270 183 -3.24 0 - 99 - 0 - - 0004 +2 2222 2228 3364 1140 1134 11.49 99 - 99 - - - - 0005 +3 3384 3393 3533 147 138 -4.40 99 - - 99 - - - -1 3687 3687 3559 126 126 -4.66 0 - 99 - 0 - - 0006 +2 3524 3539 3706 180 165 10.77 99 - 99 - - - - 0007 +3 3957 3957 4088 129 129 -3.61 99 - - 99 - - - 0008 +2 3980 3980 4114 132 132 -3.81 99 - 99 - - - - 0009 -1 4260 4173 3997 261 174 1.35 99 - - - 99 - - 0010 -2 4327 4297 4073 252 222 -3.05 99 - - - - 99 - -1 4422 4416 4261 159 153 -6.09 0 - 99 - 0 - - -2 4696 4621 4454 240 165 -1.46 0 - 99 - - 0 - +3 4611 4743 4865 252 120 -4.05 0 - 99 0 - - - -1 5217 5214 5077 138 135 -7.98 0 0 99 - 0 0 - +1 4885 5137 5292 405 153 -4.41 0 0 99 - - - - 0011 +2 4136 4157 5311 1173 1152 10.42 99 - 99 - - - - 0012 -3 5378 5348 5172 204 174 -4.80 99 - - - - - 99 0013 -1 5724 5655 5482 240 171 -6.82 99 - - - 99 - - -2 5800 5740 5603 195 135 -2.28 0 - 99 0 - 0 - +3 5607 5676 5864 255 186 -6.63 0 0 99 0 - - - -1 5892 5889 5725 165 162 -12.65 0 0 99 - 0 - - +3 6102 6165 6287 183 120 -13.29 0 0 99 0 - 0 - -2 6331 6322 5996 333 324 0.68 0 - 99 - - 0 - +1 6169 6214 6357 186 141 -10.31 0 0 99 - - - - -3 6518 6467 6261 255 204 -13.35 0 - 99 - - - 0 -1 6582 6576 6424 156 150 -3.14 0 - 99 - 0 - - -2 6772 6745 6440 330 303 5.60 0 - 99 - - 0 - 0014 +2 5543 5546 6832 1287 1284 9.41 99 - 99 - - - - -1 7251 7143 6979 270 162 -4.17 0 - 99 - 0 - - -2 7447 7165 6986 459 177 -0.39 0 - 99 - 0 0 - -2 7810 7717 7448 360 267 -0.26 0 - 99 - - 0 - -1 7848 7713 7588 258 123 -13.27 0 0 99 - 0 0 0 0015 +2 6869 6890 7852 981 960 12.19 99 - 99 - - - - 0016 +3 7785 7821 8069 282 246 -0.38 99 - - 99 - - - -3 8495 8405 8223 270 180 -11.95 0 99 - - 0 - 0 -1 8739 8700 8203 534 495 2.41 0 99 - - 0 - - -3 8837 8798 8670 165 126 -8.99 0 99 - - - - 0 -1 9084 8931 8740 342 189 5.54 0 99 - - 0 - - 0017 +1 7876 8008 9102 1224 1092 12.33 99 99 - - - - - 0018 -3 9152 9152 8997 153 153 -7.99 99 - - - - - 99 0019 -1 9489 9462 9121 366 339 2.74 99 0 - - 99 - - -3 9533 9407 9285 246 120 -13.08 0 36 - - 63 - 0 0020 +1 9103 9388 9537 432 147 3.69 99 99 - - - - 0 0021 -2 9646 9640 9503 141 135 -3.09 99 - - - - 99 - 0022 -2 9850 9844 9701 147 141 -2.55 99 - - - - 99 - 0023 +3 9786 9789 9932 144 141 -3.11 99 - - 99 - - - 0024 -1 10053 10032 9907 144 123 0.91 99 - - - 99 - - +2 9953 9998 10165 210 165 3.52 0 0 0 - - 99 - +1 9937 10075 10221 282 144 -0.51 0 0 - - 0 99 - -1 10245 10182 10054 189 126 0.13 0 0 - - 0 99 - +3 10491 10512 10646 153 132 -8.06 0 - 0 0 - 99 - -3 10757 10742 10584 171 156 -7.45 0 - 0 - - 99 0 +2 10166 10328 10828 660 498 1.76 0 - 0 - - 99 - +3 10647 10659 10850 201 189 -9.87 0 - - 0 - 99 - -1 10923 10845 10699 222 144 -20.95 0 - - 0 0 99 - +1 10861 10888 11052 189 162 -4.43 0 0 0 - - 99 - +2 10829 10847 11065 234 216 1.95 0 - 0 - - 99 - 0025 -2 11152 11143 9995 1155 1146 12.75 99 - - - - 99 - 0026 +1 11161 11170 11424 261 252 3.43 99 99 - - - - - -3 11621 11507 11337 282 168 -11.04 0 - - - 99 - 0 +2 11582 11633 11776 192 141 -5.80 0 0 0 - 99 - - +1 11593 11902 12138 543 234 3.42 0 0 - - 99 - - 0027 -1 12282 12210 11215 1065 993 10.26 99 - - - 99 - - +1 12220 12244 12372 150 126 -6.16 0 0 - - - - 99 +1 12580 12595 12717 135 120 -11.67 0 0 0 1 - - 98 -2 12868 12844 12686 180 156 -13.64 0 - - 0 - 0 99 +3 12279 12336 12872 591 534 0.62 0 - - 0 - - 99 +1 12718 12733 12891 171 156 -7.03 0 0 - - - - 99 +2 12773 12779 12952 177 171 -9.05 0 - 0 - - - 99 -2 13297 13288 13082 213 204 -3.73 0 - - 0 - 0 99 +3 12873 13101 13370 495 267 6.08 0 - - 0 - - 99 0028 -3 13406 13379 12216 1188 1161 6.54 99 - - - - - 99 +2 13109 13391 13513 402 120 -6.88 0 98 0 1 - - - -3 13847 13793 13662 183 129 -8.84 0 0 - - 99 - 0 +2 13847 13898 14032 183 132 -13.22 0 3 0 - 96 - - -3 14090 14063 13938 150 123 -10.93 0 3 - - 96 - 0 0029 +1 13366 13444 14148 780 702 2.23 0 0 - - 99 - - 0030 -1 14160 14157 13423 735 732 5.30 99 - - - 99 - - 0031 +2 14042 14057 14239 195 180 0.01 99 - 99 - - - - 0032 -2 14383 14335 14132 249 201 2.08 99 - - - - 99 - 0033 +1 14248 14266 14469 219 201 -1.53 99 99 - - - - - 0034 -2 14548 14539 14384 162 153 3.74 99 - - - - 99 - 0035 +2 14417 14429 14563 144 132 -7.59 99 - 99 - - - - -2 14932 14920 14780 150 138 -9.91 0 99 - - 0 0 - -3 15302 15290 15165 135 123 -8.75 0 99 - - 0 - 0 0036 +1 14728 14761 15327 597 564 7.25 99 99 - - - - - -1 15375 15168 14770 603 396 0.04 0 99 - - 0 - - -1 15747 15747 15508 237 237 -2.86 0 99 - - 0 0 - -2 15754 15754 15491 261 261 -9.03 0 99 - - - 0 - -3 16040 16013 15885 153 126 -7.46 0 99 - - 0 - 0 +2 15899 15932 16138 237 204 -11.27 0 99 0 - 0 - - +2 16142 16184 16312 168 126 -15.56 0 99 0 0 0 - - 0037 +1 15373 15391 16449 1074 1056 10.18 99 99 - - - - - -1 16482 16305 15856 624 447 3.64 0 99 - - 0 - - -1 16842 16662 16486 354 174 -4.67 0 - 99 - 0 - - -3 16916 16892 16755 159 135 -11.67 0 - 99 - - - 0 -1 17037 17010 16849 186 159 0.84 0 0 99 - 0 - - +1 16804 16891 17076 270 183 -1.15 0 0 99 - - - - -2 17164 17137 16943 219 192 4.14 0 - 99 - - 0 - 0038 +2 16490 16502 17191 699 687 12.02 99 - 99 - - - - -3 17564 17534 17397 165 135 -11.56 0 99 - - - - 0 +3 17403 17460 17609 204 147 -8.19 0 99 - 0 - - - 0039 +1 17275 17293 17613 336 318 9.35 99 99 - - - - - 0040 -2 17647 17644 17477 168 165 -7.53 99 - - - - 99 - +3 17721 17730 17873 150 141 -12.20 0 - 99 0 - 0 - 0041 +2 17663 17675 18439 774 762 9.94 99 - 99 - - - - -2 18454 18034 17870 582 162 4.83 0 - 99 - - 0 - 0042 +3 18345 18384 18515 168 129 3.78 99 - - 99 - - - +1 18586 18625 18972 384 345 4.43 0 0 - - 99 - - +2 19019 19061 19186 165 123 -0.46 0 - 0 - 99 - - +1 19081 19123 19383 300 258 -1.60 0 0 - - 99 - - 0043 -1 19533 19521 18475 1056 1044 10.96 99 - - - 99 - - +2 19538 19733 19855 315 120 -17.20 0 0 0 - 99 - 0 -3 19994 19859 19725 267 132 -11.47 0 0 - - 99 - 0 +2 19907 19925 20047 138 120 -0.30 0 0 0 - 99 - - +2 20048 20066 20245 195 177 -7.36 0 - 0 - 99 - - -3 20387 20315 20154 231 159 -10.38 0 0 - - 99 - 0 +3 20238 20349 20492 252 141 -8.19 0 0 - 0 99 - - +1 20122 20419 20751 627 330 0.52 0 0 - - 99 - - 0044 -1 20811 20799 19597 1212 1200 14.37 99 - - - 99 - - +2 20435 20639 20815 378 174 -5.89 0 - 0 - 99 - - -1 21096 21081 20947 147 132 -14.54 0 - 0 - 0 99 - 0045 -2 21139 21103 20906 231 195 10.65 99 - 0 - - 99 -