Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZCC010000621.1549.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZCC010000621.1549.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZCC010000621.1549.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_VZCC010000621.1549.AOI_01 Sequence length = 17658 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 73 475 615 540 138 -8.49 0 0 0 0 - - 99 -2 646 610 482 162 126 -1.96 0 0 0 0 - 0 99 +3 360 459 770 408 309 -6.42 0 - - 0 - - 99 +2 671 725 856 183 129 -3.44 0 - 0 - - - 99 0001 -3 1001 980 132 867 846 12.19 99 - - - - - 99 0002 +1 802 982 1320 516 336 5.45 99 99 0 - - - - +2 890 1148 1324 432 174 -5.04 0 - 0 - 0 99 - -1 1359 1263 1066 291 195 -3.29 0 0 0 - 0 99 - -1 1908 1635 1501 405 132 -12.92 0 - 0 - 0 99 - +3 1803 1806 1949 144 141 -13.99 0 - 0 0 - 99 - +2 1325 1763 2023 696 258 0.46 0 - 0 - - 99 - +2 2024 2216 2362 336 144 -2.63 0 - 0 0 - 99 - +3 2169 2208 2375 204 165 -4.81 0 - - 0 - 99 - +1 2515 2608 2772 255 162 -0.69 0 0 - - - 99 - 0003 -2 2833 2815 1016 1815 1797 14.69 99 - - - - 99 - -1 3564 3537 3403 159 132 -2.63 0 - 0 - 0 99 - +2 3239 3644 3766 525 120 1.92 0 - 0 0 - 99 - +3 3618 3759 3917 297 156 -4.02 0 - - 0 - 99 - -1 4239 4197 4072 165 123 -8.33 0 - - - 0 99 - +2 4343 4439 4564 219 123 -5.09 0 - 0 - - 99 - +3 4467 4476 4604 135 126 -5.77 0 - - 0 - 99 - +1 4516 4516 4641 123 123 3.75 0 0 - - - 99 - -1 4935 4929 4783 150 144 -0.80 0 - - - 0 99 - +1 4828 4834 4956 126 120 3.97 0 0 - - - 99 - +2 4859 4874 5014 153 138 -1.03 0 - 0 - - 99 - 0004 -2 6094 6034 2834 3258 3198 15.45 99 - - - - 99 - 0005 +3 6228 6234 6368 138 132 -3.07 99 - - 99 - - - 0006 -3 6569 6548 6402 165 144 -1.20 99 - - - - - 99 +1 6409 6514 6681 270 165 1.02 0 0 - 0 99 - - +3 6483 6591 6737 252 144 0.54 0 - - 0 99 - 0 -3 6761 6698 6570 189 126 -2.96 0 - - 0 99 - 0 +3 6789 6828 6986 195 156 -2.07 0 0 - 0 99 - - +2 7007 7028 7162 153 132 -13.79 0 0 0 - 99 - - -2 7273 7258 7100 171 156 -9.67 0 0 - - 99 0 - +1 6682 6838 7344 660 504 1.30 0 0 - - 99 - - +2 7163 7229 7366 201 135 -17.63 0 - 0 - 99 - - -3 7439 7421 7287 150 132 -16.65 0 - - - 99 - 0 +3 7374 7404 7568 192 162 -1.10 0 0 - 0 99 - - 0007 -1 7668 7659 6511 1155 1146 12.00 99 - - - 99 - - 0008 +1 7345 7363 7731 384 366 0.02 99 99 - - - - - 0009 -2 7816 7762 7637 177 123 -6.76 99 - - - - 99 - 0010 +3 7662 7683 8105 441 420 1.73 99 - - 99 - - - -2 8134 8020 7850 282 168 -10.72 0 - - 0 - 0 99 +1 8095 8155 8289 192 132 -10.22 0 0 0 0 - - 99 +3 8106 8466 8651 543 183 2.76 0 - - 0 - - 99 0011 -3 8795 8723 7728 1065 993 10.90 99 - - - - - 99 +3 8733 8739 8885 150 144 -7.11 0 - - 0 - 99 - +3 9093 9108 9230 135 120 -12.34 0 0 0 0 - 99 - -1 9381 9366 9199 180 165 -14.01 0 - 0 - 0 99 - +2 8792 9092 9385 591 291 0.47 0 - 0 - - 99 - +3 9231 9246 9404 171 156 -10.50 0 - - 0 - 99 - +1 9286 9292 9465 177 171 -10.50 0 0 - - - 99 - -1 9846 9762 9595 249 165 -7.33 0 - 0 - 0 99 - +2 9386 9614 9883 495 267 -0.85 0 - 0 - - 99 - 0012 -2 9919 9892 8729 1188 1161 6.49 99 - - - - 99 - +3 9879 10074 10343 462 267 -0.28 0 - - 0 - - 99 -2 10375 10312 10175 198 135 -8.48 0 - - 0 - 0 99 +1 10360 10411 10545 183 132 -13.01 0 0 - 0 - - 99 -2 10603 10576 10451 150 123 -12.30 0 - - 0 - 0 99 +3 10344 10485 10661 315 174 2.04 0 - - 0 - - 99 0013 -3 10673 10670 9936 735 732 12.19 99 - - - - - 99 0014 +1 10555 10606 10752 195 144 -5.65 99 99 - - - - - 0015 -1 10896 10848 10645 249 201 1.18 99 - - - 99 - - 0016 +3 10761 10851 10982 219 129 -0.57 99 - - 99 - - - 0017 -1 11061 11052 10897 162 153 6.32 99 - - - 99 - - 0018 +1 10930 10942 11076 144 132 -14.16 99 99 - - - - - -1 11445 11433 11293 150 138 -11.49 0 - - 99 0 - 0 -2 11815 11803 11678 135 123 -9.24 0 - - 99 - 0 0 0019 +3 11241 11274 11840 597 564 11.31 99 - - 99 - - - -3 11888 11681 11283 603 396 -1.57 0 - - 99 - - 0 -3 12260 12260 12021 237 237 -9.01 0 - - 99 0 - 0 -1 12267 12237 12004 261 231 -6.50 0 - - 99 0 - - -2 12553 12526 12398 153 126 -9.87 0 - - 99 - 0 0 +1 12412 12445 12651 237 204 -12.27 0 0 - 99 - - 0 +1 12655 12697 12825 168 126 -16.15 0 0 0 78 - - 21 0020 +3 11886 11904 12962 1074 1056 8.44 99 - - 99 - - - -3 12995 12818 12369 624 447 2.55 0 - - 99 - - 0 -3 13355 13175 12999 354 174 -3.03 0 99 - - - - 0 -2 13429 13405 13268 159 135 -10.85 0 99 - - - 0 - -3 13550 13490 13362 186 126 1.50 0 99 - 0 - - 0 +3 13317 13404 13586 267 180 -7.57 0 18 - 0 81 - - -1 13677 13650 13387 288 261 6.96 0 99 - - 0 - - 0021 +1 13003 13015 13704 699 687 8.77 99 99 - - - - - -2 14077 14047 13910 165 135 -8.41 0 - - 99 - 0 - +2 13916 13973 14122 204 147 -10.43 0 - 0 99 - - - 0022 +3 13788 13806 14126 336 318 7.85 99 - - 99 - - - 0023 -1 14160 14157 13990 168 165 -10.51 99 - - - 99 - - +2 14234 14243 14386 150 141 -10.02 0 99 0 - 0 - - 0024 +1 14176 14188 14952 774 762 7.53 99 99 - - - - - -1 14967 14547 14383 582 162 1.16 0 99 - - 0 - - 0025 +2 14858 14897 15028 168 129 -2.55 99 - 99 0 - - - 0026 +3 14901 14970 15092 189 120 -6.34 99 - - 99 - - - +3 15099 15138 15593 492 453 0.37 0 - - 0 - - 99 +1 15532 15574 15699 165 123 -3.77 0 0 - - - - 99 +3 15594 15636 15896 300 258 -7.21 0 - - 0 - - 99 0027 -3 16046 16034 14988 1056 1044 11.63 99 - - - - - 99 +1 16051 16246 16368 315 120 -10.72 0 0 - 0 - - 99 -2 16507 16495 16316 189 177 -14.58 0 - - 0 - 0 99 +1 16420 16429 16560 138 129 -8.28 0 0 - 0 - - 99 +1 16561 16579 16758 195 177 -10.35 0 0 - - - - 99 -2 16900 16828 16667 231 159 -15.40 0 - - 0 - 0 99 +2 16751 16766 17005 252 237 -3.98 0 - 0 0 - - 99 +3 16635 17133 17264 627 129 -5.95 0 0 - 0 - - 99 0028 -3 17330 17312 16110 1218 1200 14.93 99 - - - - - 99 +1 16948 17188 17334 384 144 -7.29 0 0 - - - - 99 0029 -1 17658 17547 17350 306 195 12.44 99 0 - - 99 - -