Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZBX010000671.1704.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZBX010000671.1704.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZBX010000671.1704.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_VZBX010000671.1704.AOI_01 Sequence length = 11483 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +3 27 69 194 165 123 -2.34 99 - - 99 - - - 0002 -3 395 350 228 165 120 -2.18 99 - - - - - 99 +3 315 417 563 246 144 -2.08 0 - - 0 99 - - -3 587 575 426 159 147 -6.11 0 - - - 99 - 0 +3 615 654 812 195 156 -4.28 0 0 - 0 99 - - +2 833 854 988 153 132 -12.94 0 0 0 - 99 - - -2 1099 1084 926 171 156 -9.18 0 0 - - 99 0 - +1 508 664 1170 660 504 2.97 0 0 - - 99 - - +2 989 1055 1192 201 135 -18.69 0 - 0 - 99 - - -3 1265 1247 1113 150 132 -16.39 0 - - - 99 - 0 +3 1200 1254 1394 192 138 -6.94 0 0 - 0 99 - - +1 1171 1276 1407 234 129 2.00 0 0 - - 99 - - 0003 -1 1497 1485 337 1158 1146 11.37 99 - - - 99 - - 0004 +1 1408 1471 1608 198 135 -8.56 99 99 - - - - - -1 1965 1941 1771 192 168 -10.90 0 - - - 0 99 - +3 2016 2067 2210 192 141 -7.11 0 - 0 0 - 99 - +2 2027 2336 2572 543 234 3.33 0 - 0 - - 99 - 0005 -2 2716 2560 1649 1065 909 10.86 99 - - - - 99 - +2 2654 2660 2806 150 144 -6.42 0 - 0 - 99 - - +2 3014 3029 3151 135 120 -14.76 0 0 0 0 99 - - -3 3302 3248 3120 180 126 -20.38 0 7 - - 92 - 0 +1 2713 2770 3306 591 534 1.10 0 0 - - 99 - - +2 3152 3167 3325 171 156 -4.64 0 - 0 - 99 - - +3 3207 3213 3386 177 171 -11.32 0 - - 0 99 - - -3 3767 3638 3516 249 120 -11.41 0 0 - - 99 - 0 +1 3307 3307 3804 495 495 2.87 0 0 - - 99 - - 0006 -1 3840 3813 2650 1188 1161 5.54 99 - - - 99 - - +3 3543 3825 3947 402 120 -8.58 0 0 99 0 - - - -1 4296 4278 4114 180 162 -9.33 0 - 0 - 0 99 - +3 4281 4332 4466 183 132 -13.16 0 - 0 0 - 99 - -1 4524 4497 4372 150 123 -11.31 0 - 21 - 0 78 - 0007 +2 3800 3878 4582 780 702 0.45 0 - 0 - - 99 - 0008 -2 4594 4528 3857 735 669 6.26 99 - 0 - - 99 - 0009 +3 4476 4491 4685 207 192 -1.32 99 - - 99 - - - 0010 -3 4718 4691 4566 150 123 -0.75 99 - - - - - 99 0011 +2 4643 4655 4783 138 126 -3.49 99 - 99 - - - - 0012 -2 4816 4795 4670 144 123 3.84 99 - - - - 99 - 0013 +1 4681 4771 4902 219 129 -1.81 99 99 - - - - - 0014 -2 4981 4972 4817 162 153 5.70 99 - - - - 99 - 0015 +2 4850 4862 4996 144 132 -7.08 99 - 99 - - - - -2 5365 5353 5213 150 138 -8.60 0 99 - - 0 0 - -3 5735 5723 5598 135 123 -11.07 0 99 - - 0 - 0 0016 +1 5161 5194 5760 597 564 8.26 99 99 - - - - - -1 5808 5601 5203 603 396 -0.75 0 99 - - 0 - - -1 6180 6180 5941 237 237 -3.86 0 99 - - 0 0 - -2 6187 6187 5924 261 261 -8.03 0 99 - - - 0 - -3 6473 6446 6318 153 126 -8.66 0 99 - - 0 - 0 +2 6332 6365 6571 237 204 -12.84 0 99 0 - 0 - - +2 6575 6617 6751 174 132 -17.13 0 99 0 - 0 - - 0017 +1 5806 5824 6882 1074 1056 9.60 99 99 - - - - - -1 6915 6738 6289 624 447 2.30 0 99 - - 0 - - +1 6883 6961 7164 279 201 -12.85 0 0 99 - 0 - - -1 7275 7095 6919 354 174 -4.17 0 0 99 - 0 - - -3 7349 7325 7188 159 135 -13.23 0 - 99 - - - 0 -1 7470 7410 7282 186 126 2.10 0 0 99 - 0 - - +1 7237 7324 7509 270 183 -7.84 0 0 99 - - - - -2 7597 7570 7376 219 192 5.97 0 - 99 0 - 0 - 0018 +2 6923 6935 7624 699 687 9.09 99 - 99 - - - - -3 7997 7967 7830 165 135 -9.37 0 99 - - - - 0 0019 +1 7708 7726 8046 336 318 8.76 99 99 - - - - - 0020 -1 8070 8070 7891 177 177 2.03 99 - - - 99 - - 0021 -2 8080 8077 7910 168 165 -9.34 99 - - - - 99 - +3 8154 8163 8306 150 141 -11.42 0 - 99 0 - 0 - 0022 +2 8096 8108 8872 774 762 9.66 99 - 99 - - - - -2 8887 8866 8303 582 561 1.88 0 - 99 - - 0 - 0023 +3 8778 8817 8948 168 129 2.72 99 - - 99 - - - +1 9019 9058 9513 492 453 3.22 0 0 - - 99 - - +2 9452 9494 9619 165 123 -3.96 0 - 0 - 99 - - +1 9514 9556 9816 300 258 -2.68 0 0 - - 99 - - 0024 -1 9966 9954 8908 1056 1044 9.95 99 - - - 99 - - +2 9971 10166 10288 315 120 -18.51 0 0 0 - 99 - 0 -3 10427 10292 10158 267 132 -15.67 0 0 - - 99 - 0 -3 10820 10748 10587 231 159 -10.72 0 0 - - 99 - 0 -2 10915 10885 10763 150 120 -16.02 0 0 - 0 99 0 - +3 10671 10686 10925 252 237 -3.88 0 0 - 0 99 - - +1 10555 10852 11184 627 330 1.37 0 0 - - 99 - - 0025 -1 11250 11232 10030 1218 1200 14.60 99 - - - 99 - - +2 10868 11108 11254 384 144 -8.83 0 - 0 - 99 - - 0026 -2 11482 11467 11270 210 195 10.77 99 - 0 - - 99 -