Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZAU010000611.1837.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZAU010000611.1837.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZAU010000611.1837.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_VZAU010000611.1837.AOI_01 Sequence length = 21140 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 241 190 47 192 141 -10.30 0 - - 0 - 0 99 0001 +1 133 172 315 180 141 -3.04 99 99 - - - - - +2 458 464 589 129 123 -9.46 0 0 0 - 99 - - -2 682 658 527 153 129 -14.01 0 0 - - 99 0 - +1 316 529 822 504 291 -0.10 0 0 - - 99 - - -2 1198 1165 1007 189 156 -13.11 0 0 - - 99 0 - +2 1328 1337 1462 132 123 -3.67 0 0 0 0 99 0 - -2 1471 1420 1277 192 141 -2.06 0 - - - 99 0 - +1 1306 1378 1527 219 147 -12.58 0 0 - - 99 - - +3 1686 1761 1925 237 162 -9.68 0 - - 0 99 - - -3 2072 2033 1908 162 123 -10.15 0 0 - - 99 - 0 +1 1813 1870 2178 363 306 -4.99 0 0 - - 99 - - 0002 -1 2211 2184 328 1881 1854 10.29 99 - - - 99 - - 0003 -3 2321 2318 2181 138 135 -2.98 99 - - - - - 99 0004 -1 2415 2409 2281 132 126 -9.71 99 - - - 99 - - 0005 +2 2312 2333 2476 162 141 -9.82 99 - 99 - - - - -2 2683 2674 2546 135 126 -11.09 0 - - - - 0 99 0006 -3 2774 2771 2535 237 234 -0.04 99 - - - - - 99 0007 -2 2869 2860 2684 183 174 -7.13 99 - - - - 99 - 0008 -2 3064 3034 2897 165 135 -2.10 99 - - - - 99 - 0009 -3 3071 3056 2934 135 120 -5.48 96 - - - - 3 96 +3 3375 3486 3611 234 123 -12.75 0 - 0 0 - 99 - +1 3568 3571 3729 159 156 -12.20 0 0 0 - - 99 - -1 3786 3768 3643 141 123 -6.59 0 - 0 - 0 99 - +2 3458 3488 3790 330 300 -1.23 0 - 0 - - 99 - +3 3660 3687 3821 159 132 -11.70 0 - - 0 - 99 - +2 3791 4064 4246 453 180 -2.93 0 - 0 - - 99 - 0010 -2 4528 4528 3272 1254 1254 17.64 99 - - - - 99 - 0011 +2 4247 4337 4540 291 201 -4.93 99 - 99 - - - - -3 4826 4760 4617 207 141 -12.31 0 0 - - 99 - 0 +1 4549 4684 4842 291 156 -6.45 0 0 - - 99 - - +2 4847 4886 5044 195 156 -7.69 0 0 0 - 99 - - +3 5196 5226 5363 165 135 -12.36 0 0 - 0 99 - - -3 5450 5405 5232 216 171 -8.27 0 0 - - 99 - 0 -3 5591 5573 5451 138 120 -15.80 0 0 - - 99 - 0 0012 +1 4843 4960 5655 810 693 -5.45 0 0 - - 99 - - -3 5762 5753 5616 144 135 -3.07 0 - - - 99 - 0 +2 5660 5717 5866 204 147 -7.56 0 0 0 - 99 - - +1 5656 5707 5907 249 198 -6.09 0 0 - - 99 - - 0013 -1 6324 6306 4549 1773 1755 15.98 99 - - - 99 - - +2 6158 6188 6328 168 138 -0.06 0 - 0 - 99 - - -3 6812 6755 6618 192 135 -12.93 0 - - - 99 - 0 +2 6788 6809 6964 174 153 -13.00 0 0 0 - 99 - - +1 6727 7132 7383 654 249 -1.95 0 0 - - 99 - - +2 7166 7217 7444 276 225 -7.63 0 - 0 - 99 - - -3 7559 7535 7395 162 138 -8.89 0 - - - 99 - 0 -3 7727 7685 7560 165 123 -16.86 0 - - - 99 - 0 -3 8411 8408 8259 150 147 -14.36 0 0 - - 99 - 0 0014 +1 7609 7822 8457 846 633 -3.86 0 0 - - 99 - - -3 8576 8537 8415 159 120 -2.31 0 - - - 99 - 0 -3 9116 9101 8964 150 135 -10.77 0 0 - - 99 - 0 +1 8491 8584 9243 750 657 -0.13 0 0 - - 99 - - 0015 -1 9570 9510 6325 3243 3183 16.87 99 - - - 99 - - 0016 +2 9704 9710 9850 144 138 -5.85 99 - 99 - - - - 0017 -2 10051 10006 9884 165 120 -4.20 99 - - - - 99 - +3 9891 9996 10163 270 165 1.16 0 - 0 0 - - 99 +2 9971 10073 10219 246 144 -1.97 0 - 0 - - 0 99 -2 10243 10180 10052 189 126 -4.56 0 - 0 - - 0 99 +1 10489 10510 10644 153 132 -12.77 0 0 - 0 - - 99 -1 10755 10740 10582 171 156 -13.19 0 - - 0 0 - 99 +3 10164 10332 10826 660 492 1.27 0 - - 0 - - 99 +1 10645 10711 10848 201 135 -20.73 0 0 - - - 0 99 -2 10921 10843 10697 222 144 -22.55 0 0 - - - 0 99 +2 10859 10886 11050 189 162 -4.83 0 - 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