Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZAS010001471.1893.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZAS010001471.1893.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZAS010001471.1893.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_VZAS010001471.1893.AOI_01 Sequence length = 21140 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 230 236 361 129 123 -4.26 0 0 0 - 99 - - -2 988 937 779 207 156 -9.93 0 0 - - 99 0 - 0001 +1 88 202 1077 987 873 -0.01 0 0 - - 99 - - +2 1100 1109 1234 132 123 -0.02 0 0 0 0 99 0 - -2 1243 1192 1049 192 141 -0.44 0 - - - 99 0 - +1 1078 1150 1299 219 147 -9.86 0 0 - - 99 - - +3 1458 1533 1697 237 162 -12.11 0 - - 0 99 - - -3 1844 1805 1680 162 123 -8.10 0 0 - - 99 - 0 +1 1585 1642 1950 363 306 -2.12 0 0 - - 99 - - 0002 -1 1983 1956 100 1881 1854 10.48 99 - - - 99 - - 0003 -3 2096 2090 1953 141 135 -1.14 99 - - - - - 99 0004 -2 2488 2377 2255 231 120 -4.02 95 - - 4 - 95 - 0005 -1 2511 2505 2374 135 129 -5.38 99 - - - 99 - - 0006 +1 2563 2575 2706 141 129 -4.46 92 92 - - - 7 - +3 2610 2703 2858 246 153 -3.49 0 - - 0 - - 99 0007 -3 3155 2975 2619 534 354 2.73 99 - - - - - 99 -1 3354 3342 3208 144 132 -6.14 0 - 0 - 0 99 - 0008 -2 3394 3373 3098 294 273 0.63 99 - - - - 99 - 0009 +2 3212 3329 3523 309 192 -0.46 99 - 99 - - - - 0010 -1 3588 3534 3364 222 168 -3.23 99 - - - 99 - - 0011 -3 3791 3749 3615 174 132 -7.37 99 - - - - - 99 -3 4133 4100 3924 207 174 -4.20 0 - - - 99 - 0 +1 4150 4246 4434 282 186 -0.41 0 0 - - 99 - - 0012 -1 4491 4470 3622 867 846 9.28 99 - - - 99 - - +3 4638 4689 4991 351 300 -0.83 0 0 - 0 99 - - +1 4444 4849 5064 618 213 -0.21 0 0 - - 99 - - -3 5414 5372 5223 189 147 -2.60 0 0 - - 99 - 0 +1 5065 5296 5418 351 120 -0.27 0 0 - - 99 - 0 -3 5540 5540 5415 123 123 -5.72 0 - - - 99 - 0 +2 6032 6032 6163 129 129 -3.85 0 - 0 - 99 - - 0013 -1 6378 6234 4507 1869 1725 9.06 99 - - - 99 - - -1 7125 7029 6895 228 132 -0.40 0 - 0 - 0 99 - 0014 +2 6164 6212 7414 1248 1200 0.17 99 - 99 - - - - +3 7254 7302 7430 174 126 -9.93 0 - - 0 - 99 - -1 7557 7500 7375 180 123 -5.93 0 - - - 0 99 - -1 7908 7830 7696 210 132 -1.50 0 - 0 - 0 99 - -1 8421 8406 8266 153 138 -4.91 0 - - - 0 99 - +2 8354 8843 9031 675 186 -1.44 0 - 0 - - 99 - 0015 -2 9577 9517 6326 3249 3189 9.25 99 - - - - 99 - 0016 +3 9711 9717 9851 138 132 -1.86 99 - - 99 - - - 0017 -3 10052 10031 9885 165 144 -2.39 99 - - - - - 99 +1 9892 9997 10164 270 165 3.78 0 0 - 0 99 - - +3 9966 10074 10220 252 144 -2.53 0 - - 0 99 - - -3 10244 10232 10083 159 147 -3.65 0 - - - 99 - 0 +3 10272 10311 10469 195 156 -1.98 0 0 - 0 99 - - +2 10490 10511 10645 153 132 -9.81 0 0 0 - 99 - - -2 10756 10741 10583 171 156 -9.29 0 0 - - 99 0 - +1 10165 10321 10827 660 504 3.28 0 0 - - 99 - - +2 10646 10712 10849 201 135 -17.90 0 - 0 - 99 - - -3 10922 10904 10770 150 132 -16.23 0 - - - 99 - 0 +3 10857 10887 11051 192 162 -4.88 0 0 - 0 99 - - +1 10828 10846 11064 234 216 3.41 0 0 - - 99 - - 0018 -1 11151 11142 9994 1155 1146 12.48 99 - - - 99 - - 0019 -2 11299 11245 11120 177 123 -8.86 99 - - - - 99 - -2 11527 11503 11333 192 168 -9.00 0 - - 0 - 0 99 0020 +3 11145 11166 11588 441 420 3.95 99 - - 99 - - - +1 11578 11638 11772 192 132 -6.16 0 0 0 0 - - 99 +3 11589 11949 12134 543 183 4.23 0 - - 0 - - 99 0021 -3 12278 12206 11211 1065 993 10.75 99 - - - - - 99 +3 12216 12222 12368 150 144 -5.46 0 - - 0 - 99 - +3 12576 12591 12713 135 120 -8.77 0 0 0 0 - 99 - -1 12864 12849 12682 180 165 -13.49 0 - 0 - 0 99 - +2 12275 12332 12868 591 534 1.83 0 - 0 - - 99 - +3 12714 12729 12887 171 156 -6.54 0 - - 0 - 99 - +1 12769 12775 12948 177 171 -10.12 0 0 - - - 99 - -1 13293 13284 13078 213 204 -1.58 0 - 0 - 0 99 - +2 12869 13097 13366 495 267 5.47 0 - 0 - - 99 - 0022 -2 13402 13375 12212 1188 1161 7.65 99 - - - - 99 - +1 13105 13387 13509 402 120 -6.98 0 0 32 66 - - - +3 13362 13557 13826 462 267 1.70 0 - - 0 - - 99 -2 13858 13789 13658 198 129 -8.57 0 - - 0 - 0 99 +1 13843 13894 14028 183 132 -12.47 0 0 - 0 - - 99 -2 14086 14059 13934 150 123 -8.91 0 - - 0 - 0 99 +3 13827 13968 14144 315 174 3.16 0 - - 0 - - 99 0023 -3 14156 14153 13419 735 732 11.78 99 - - - - - 99 0024 +1 14038 14089 14247 207 156 -4.80 99 99 - - - - - 0025 -1 14280 14253 14128 150 123 -1.26 99 - - - 99 - - 0026 +3 14205 14217 14345 138 126 -6.53 99 - - 99 - - - 0027 -3 14378 14357 14232 144 123 3.79 99 - - - - - 99 0028 +2 14243 14333 14464 219 129 0.21 99 - 99 - - - - 0029 -3 14543 14534 14379 162 153 4.43 99 - - - - - 99 0030 +3 14412 14424 14558 144 132 -8.79 99 - - 99 - - - -3 14927 14915 14775 150 138 -9.34 0 - 99 - - 0 0 0031 +2 14723 14756 15322 597 564 8.67 99 - 99 - - - - -2 15370 15163 14765 603 396 -0.08 0 - 99 - - 0 - -2 15742 15742 15503 237 237 -4.32 0 - 99 - - 0 0 -3 15749 15749 15486 261 261 -7.64 0 - 99 - - - 0 -1 16035 16008 15880 153 126 -7.29 0 - 99 - 0 0 - +3 15894 15927 16133 237 204 -9.71 0 - 99 0 - 0 - +3 16137 16179 16307 168 126 -14.76 0 0 98 0 - 1 - 0032 +2 15368 15386 16444 1074 1056 10.00 99 - 99 - - - - -2 16477 16300 15851 624 447 4.06 0 - 99 - - 0 - -2 16837 16657 16481 354 174 -3.24 0 - - 99 - 0 - -1 16911 16887 16750 159 135 -11.45 0 - - 99 0 - - -2 17032 17005 16844 186 159 5.44 0 - 0 99 - 0 - +2 16799 16886 17071 270 183 -7.30 0 - 0 99 - - - -3 17159 17132 16938 219 192 5.82 0 - - 99 - - 0 0033 +3 16485 16497 17186 699 687 9.82 99 - - 99 - - - -1 17559 17529 17392 165 135 -5.20 0 - 99 - 0 - - +1 17416 17455 17604 186 147 -9.37 0 0 99 - - 0 - 0034 +2 17270 17288 17608 336 318 8.28 99 - 99 - - - - 0035 -2 17635 17632 17453 180 177 1.52 99 - - - - 99 - -3 17642 17639 17472 168 165 -8.46 0 - - - - 99 0 +1 17716 17725 17868 150 141 -10.20 0 0 - 99 - - 0 0036 +3 17658 17670 18434 774 762 9.60 99 - - 99 - - - -3 18449 18122 17865 582 255 2.43 0 - - 99 - - 0 0037 +1 18340 18379 18510 168 129 2.96 99 99 - - - - - +2 18581 18620 18967 384 345 1.80 0 - 0 - - 99 - +3 19014 19056 19181 165 123 -0.34 0 - - 0 - 99 - +2 19076 19118 19378 300 258 -4.83 0 - 0 - - 99 - 0038 -2 19528 19516 18470 1056 1044 12.44 99 - - - - 99 - +3 19533 19728 19850 315 120 -11.89 0 - 0 0 - 99 - -1 19989 19977 19798 189 177 -12.98 0 - 0 - 0 99 - +3 19902 19920 20042 138 120 -1.41 0 - 0 0 - 99 - +3 20043 20061 20240 195 177 -8.71 0 - - 0 - 99 - -1 20382 20277 20149 231 126 -12.39 0 - 0 - 0 99 - +1 20233 20344 20487 252 141 -11.20 0 0 0 - - 99 - +2 20117 20414 20746 627 330 0.13 0 - 0 - - 99 - 0039 -2 20812 20794 19592 1218 1200 14.70 99 - - - - 99 - +3 20430 20670 20816 384 144 -6.37 0 - - 0 - 99 - 0040 -3 21140 21029 20832 306 195 9.82 99 - 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