Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZAP010001611.2035.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZAP010001611.2035.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/NZ_VZAP010001611.2035.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Prevotellaceae/Prevotella_copri.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_VZAP010001611.2035.AOI_01 Sequence length = 11551 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +3 102 117 251 147 132 -13.66 0 - 99 0 - 0 - 0001 +2 2 95 292 288 195 9.86 99 - 99 - - 0 - -2 694 454 308 384 144 -9.64 0 - - 99 - 0 - -1 891 780 637 252 141 -8.36 0 - - 99 0 - 0 +2 734 761 895 159 132 -17.34 0 0 0 99 0 - 0 +1 742 814 975 231 159 -12.51 0 0 - 99 - - 0 -3 1007 710 378 627 330 1.73 0 - - 99 - - 0 -2 1081 1063 884 195 177 -10.74 0 - - 99 - 0 - -2 1222 1204 1082 138 120 -0.60 0 - - 99 - 0 0 +1 1135 1267 1404 267 135 -15.52 0 0 - 99 - - 0 0002 +3 312 330 1532 1218 1200 14.73 99 - - 99 - - - -2 1591 1528 1334 255 192 -15.39 0 - - 99 - 0 0 -3 2048 2006 1746 300 258 -3.33 0 - - 99 - - 0 -2 2110 2068 1943 165 123 -4.25 0 - - 99 - 0 - -3 2543 2504 2049 492 453 2.41 0 - - 99 - - 0 0003 +3 1596 1608 2654 1056 1044 10.28 99 - - 99 - - - 0004 -1 2784 2745 2614 168 129 1.87 99 - - - 99 - - +2 2675 3095 3259 582 162 2.88 0 - 0 - - 99 - -1 3408 3399 3256 150 141 -14.00 0 - 0 - 0 99 - 0005 -2 3466 3454 2690 774 762 8.65 99 - - - - 99 - +2 3482 3485 3652 168 165 -6.52 0 - 0 99 - - - 0006 +3 3489 3492 3671 180 177 2.06 99 - - 99 - - - -1 3726 3669 3520 204 147 -11.43 0 - - 0 0 - 99 +1 3565 3595 3732 165 135 -8.52 0 0 - - - - 99 0007 -3 3854 3836 3516 336 318 8.63 99 - - - - - 99 +2 3965 3992 4186 219 192 5.79 0 - 0 - - 99 - +3 4092 4152 4280 186 126 2.92 0 - - 0 - 99 0 -3 4325 4238 4053 270 183 -6.72 0 - - - - 99 0 +1 4213 4237 4374 159 135 -12.59 0 0 - - - 99 - 0008 -2 4639 4627 3938 699 687 9.84 99 - - - - 99 - +3 4287 4467 4643 354 174 -4.84 0 - - 0 - 99 0 -3 4679 4601 4398 279 201 -11.96 0 - - 0 - 99 0 -2 4987 4945 4817 168 126 -16.64 0 - - 0 0 0 99 -2 5230 5197 4991 237 204 -13.42 0 - - 0 - 0 99 +1 5089 5116 5244 153 126 -9.31 0 0 - 0 - - 99 +3 4647 4824 5273 624 447 2.28 0 - - 0 - - 99 +3 5385 5385 5624 237 237 -3.29 0 - 0 0 - - 99 +2 5378 5378 5641 261 261 -6.58 0 - 0 - - - 99 0009 -3 5759 5741 4680 1077 1059 10.07 99 - - - - - 99 +1 5830 5842 5967 135 123 -9.37 0 0 - 0 - - 99 +2 6200 6212 6352 150 138 -9.26 0 - 0 0 - - 99 +3 5757 5964 6362 603 396 -0.64 0 - - 0 - - 99 0010 -3 6404 6371 5805 597 564 6.97 99 - - - - - 99 0011 -2 6715 6703 6569 144 132 -6.24 99 - - - - 99 - 0012 +2 6584 6593 6748 162 153 3.89 99 - 99 - - - - 0013 -3 6884 6794 6663 219 129 -0.50 99 - - - - - 99 0014 +1 6829 6874 6999 168 123 -1.59 99 99 - - - - - 0015 -1 7089 7038 6880 207 156 -5.29 99 - - - 99 - - +3 7041 7068 7193 150 123 -12.99 0 - 97 0 - 2 - -1 7284 7233 7099 183 132 -14.32 0 - 99 - 0 0 - +3 7269 7287 7451 180 162 -11.14 0 - 99 0 - 0 - 0016 +2 6971 7037 7708 735 669 6.87 99 - 99 - - 0 - 0017 -2 7765 7687 6983 780 702 -0.29 0 - 99 - - 0 - -1 7929 7740 7618 309 120 -6.31 0 - - - 0 98 0 +1 7798 7882 8049 249 165 -8.65 0 0 - 99 - - 0 -3 8258 8258 7761 495 495 2.76 0 - - 99 - - 0 -1 8358 8352 8179 177 171 -11.90 0 - - 99 0 - - -2 8413 8398 8240 171 156 -7.24 0 - - 99 - 0 - +1 8263 8278 8445 180 165 -18.81 0 0 - 99 - - 0 -2 8551 8536 8414 135 120 -13.43 0 - - 99 0 0 0 -3 8852 8795 8259 591 534 1.42 0 - - 99 - - 0 -2 8911 8905 8759 150 144 -5.87 0 - - 99 - 0 - 0018 +3 7725 7752 8915 1188 1161 5.94 99 - - 99 - - - -2 9538 9229 8993 543 234 2.89 0 - 99 - - 0 - -1 9549 9498 9355 192 141 -6.22 0 - 99 - 0 0 - +3 9600 9624 9794 192 168 -17.91 0 - 99 0 - 0 - 0019 +2 8849 8921 9916 1065 993 9.95 99 - 99 - - - - -2 9919 9730 9539 378 189 1.79 0 - 99 - - 0 - -2 10282 10231 10091 189 138 -11.09 0 99 - 0 0 0 - -1 10314 10296 10078 234 216 2.60 0 99 - - 0 - - -3 10496 10409 10275 219 132 -10.31 0 99 - - - - 0 +3 10386 10401 10559 171 156 -7.70 0 99 - 0 0 - - -1 10833 10815 10315 516 498 2.18 0 99 - - 0 - - +2 10838 10847 10993 153 144 -13.18 0 99 0 - 0 - - -1 11100 10989 10834 264 153 0.55 0 99 0 - 0 - - -2 11137 11020 10889 246 129 -5.55 0 99 - - 0 0 - 0020 +1 9973 10000 11148 1173 1146 12.23 99 99 - - - - - 0021 -2 11275 11272 11138 135 132 -2.38 99 - - - - 99 -